Activity-based probes for proteomic profiling of histone deacetylase complexes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 4, 2007, Pages 1171-1176

  Salisbury, Cleo M ^a   Cravatt, Benjamin F ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Cancer

Indexed keywords

ALKYNE; BENZOPHENONE; HISTONE DEACETYLASE; PROTEOME; VORINOSTAT;

ARTICLE; CONTROLLED STUDY; DENATURATION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME SUBSTRATE; GENE EXPRESSION PROFILING; HUMAN; HUMAN CELL; MOLECULAR PROBE; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEOMICS;

CELL LINE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HISTONE DEACETYLASES; HUMANS; MOLECULAR PROBES; PROTEOMICS;

EID: 33846649707     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0608659104     Document Type: Article

References (30)

1. Kuo MH, Allis CD (1998) BioEssays 20:615-626.
2. Minucci S, Pelicci PG (2006) Nat Rev Cancer 6:38-51.
3. de Ruijter AJ, van Gennip AH, Caron HN, Kemp S, van Kuilenburg AB (2003) Biochem J 370:737-749.
4. Blander G, Guarente L (2004) Annu Rev Biochem 73:417-435.
5. Marks P, Rifkind RA, Richon VM, Breslow R, Miller T, Kelly WK (2001) Nat Rev Cancer 1:194-202.
6. Richon VM, Webb Y, Merger R, Sheppard T, Jursic B, Ngo L, Civoli F, Breslow R, Rifkind RA, Marks PA (1996) Proc Natl Acad Sci USA 93:5705-5708.
7. Kelly WK, Marks PA (2005) Nat Clin Pract Oncol 2:150-157.
8. Pflum MK, Tong JK, Lane WS, Schreiber SL (2001) J Biol Chem 276:47733-47741.
9. You A, Tong JK, Grozinger CM, Schreiber SL (2001) Proc Natl Acad Sci USA 98:1454-1458.
10. Zhang Y, Ng HH, Erdjument-Bromage H, Tempst P, Bird A, Reinberg D (1999) Genes Dev 13:1924-1935.
11. Verdin E, Dequiedt F, Fischle W, Frye R, Marshall B, North B (2004) Methods Enzymol 377:180-196.
12. Brackertz M, Gong Z, Leers J, Renkawitz R (2006) Nucleic Acids Res 34:397-406.
13. Yao YL, Yang WM (2003) J Biol Chem 278:42560-42568.
14. Curtin M, Glaser K (2003) Curr Med Chem 10:2373-2392.
15. Finnin MS, Donigian JR, Cohen A, Richon VM, Rifkind RA, Marks PA, Breslow R, Pavletich NP (1999) Nature 401:188-193.
16. Vannini A, Volpari C, Filocamo G, Casavola EC, Brunetti M, Renzoni D, Chakravarty P, Paolini C, De Francesco R, Gallinari P, et al. (2004) Proc Natl Acad Sci USA 101:15064-15069.
17. Liu Y, Patricelli MP, Cravatt BF (1999) Proc Natl Acad Sci USA 96:14694-14699.
18. Speers AE, Cravatt BF (2004) Chembiochem 5:41-47.
19. Webb Y, Zhou X, Ngo L, Cornish V, Stahl J, Erdjument-Bromage H, Tempst P, Rifkind RA, Marks PA, Breslow R, Richon VM (1999) J Biol Chem 274:14280-14287.
20. Speers AE, Adam GC, Cravatt BF (2003) J Am Chem Soc 125:4686-4687.
21. Speers AE, Cravatt BF (2004) Chem Biol 11:535-546.
22. Jessani N, Niessen S, Wei BQ, Nicolau M, Humphrey M, Ji Y, Han W, Noh DY, Yates JR, III, Jeffrey SS, Cravatt BF (2005) Nat Methods 2:691-697.
23. Sieber SA, Niessen S, Hoover HS, Cravatt BF (2006) Nat Chem Biol 2:274-281.
24. Gu H, Liang Y, Mandel G, Roizman B (2005) Proc Natl Acad Sci USA 102:7571-7576.
25. Liu H, Sadygov RG, Yates JR, III (2004) Anal Chem 76:4193-4201.
26. Pang JX, Ginanni N, Dongre AR, Hefta SA, Opitek GJ (2002) J Proteome Res 1:161-169.
27. Everley PA, Krijgsveld J, Zetter BR, Gygi SP (2004) Mol Cell Proteomics 3:729-735.
28. Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R (1999) Nat Biotechnol 17:994-999.
29. Coussens LM, Fingleton B, Matrisian LM (2002) Science 295:2387-2392.
30. Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Crucial CM, et al. (2002) Nature 415:141-147.