Arginyltransferase, its specificity, putative substrates, bidirectional promoter, and splicing-derived isoforms

Journal of Biological Chemistry

Volumn 281, Issue 43, 2006, Pages 32559-32573

  Hu, Rong Gui ^a   Brower, Christopher S ^a   Wang, Haiqing ^a   Davydov, Ilia V ^b   Sheng, Jun ^a   Zhou, Jianmin ^a   Yong, Tae Kwon ^c   Varshavsky, Alexander ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b Meso Scale Discovery   (United States)

^c UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOVASCULAR SYSTEM; CELL MEMBRANES; CHROMOSOMES; CYTOLOGY; SUBSTRATES;

ARGINYLTRANSFERASE; CHROMOSOME SEGREGATION; ENDOPLASMIC RETICULUM; UBIQUITIN LIGASES;

ENZYMES;

ARGINYLTRANSFERASE; GLUCOSE REGULATED PROTEIN 78; MESSENGER RNA; PROTEIN DISULFIDE ISOMERASE;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CELL NUCLEUS; CONTROLLED STUDY; EMBRYO; ENDOPLASMIC RETICULUM; ENZYME SPECIFICITY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PROCESSING;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; AMINOACYLTRANSFERASES; ANIMALS; BETA-GALACTOSIDASE; GENES, REPORTER; ISOENZYMES; LUCIFERASES; MICE; MICE, KNOCKOUT; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; MUTATION; PLASMIDS; PROMOTER REGIONS (GENETICS); RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY; TISSUE DISTRIBUTION; TRANSFECTION;

EID: 33845953070     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M604355200     Document Type: Article

References (87)

1. Varshavsky, A. (2006) Protein Sci. 15, 647-654
2. Hershko, A., Ciechanover, A., and Varshavsky, A. (2000) Nat. Med. 10, 1073-1081
3. Pickart, C. (2004) Cell 116, 181-190
4. Elsasser, S., and Finley, D. (2005) Nat. Cell Biol. 7, 16-23
5. Petroski, M. D., and Deshaies, R. J. (2005) Nat. Rev. Mol. Cell Biol. 6, 9-20
6. Fang, S., and Weissman, A. M. (2004) Cell. Mol. Life Sci. 61, 1546-1561
7. Hochstrasser, M. (2006) Cell 124, 27-34
8. Bachmair, A., and Varshavsky, A. (1989) Cell 56, 1019-1032
9. Glotzer, M., Murray, A. W., and Kirschner, M. (1991) Nature 349, 132-138
10. Johnson, E. S., Bartel, B., W., and Varshavsky, A. (1992) EMBO J. 11, 497-505
11. Sheng, J., Kumagai, A., Dunphy, W. G., and Varshavsky, A. (2002) EMBO J. 21, 6061-6071
12. Ardley, H. C., and Robinson, P. A. (2005) Essays Biochem. 41, 15-30
13. Cardozo, T., and Pagano, M. (2004) Nat. Rev. Mol. Cell Biol. 5, 739-751
14. Peters, J.-M. (2002) Mol. Cell 9, 931-943
15. Baumeister, W., Walz, J., Zühl, F., and Seemüller, E. (1998) Cell 92, 367-380
16. Rape, M., and Jentsch, S. (2002) Nat. Cell Biol. 4, E113-E116
17. Wolf, D. H., and Hilt, W. (2004) Biochim. Biophys. Acta 1695, 19-31
18. Rechsteiner, M., and Hill, C. P. (2005) Trends Cell Biol. 15, 27-33
19. Collins, G. A., and Tansey, W. P. (2006) Curr. Opin. Genet. Dev. 16, 197-202
20. Finley, D., Bartel, B., and Varshavsky, A. (1989) Nature 338, 394-401
21. Schnell, J. D., and Hicke, L. (2003) J. Biol. Chem. 278, 35857-35860
22. Bachmair, A., Finley, D., and Varshavsky, A. (1986) Science 234, 179-186
23. Varshavsky, A. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 12142-12149
24. Kwon, Y. T., Xia, Z. X., An, J. Y., Tasaki, T., Davydov, I. V., Seo, J. W., Xie, Y., and Varshavsky, A. (2003) Mol. Cell. Biol. 23, 8255-8271
25. Tasaki, T., Mulder, L. C. F., Iwamatsu, A., Lee, M. J., Davydov, I. V., Varshavsky, A., Muesing, M., and Kwon, Y. T. (2005) Mol. Cell. Biol. 25, 7120-7136
26. Hu, R.-G., Sheng, J., Xin, Q., Xu, Z., Takahashi, T. T., and Varshavsky, A. (2005) Nature 437, 981-986
27. Johnson, E. S., Gonda, D. K., and Varshavsky, A. (1990) Nature 346, 287-291
28. Suzuki, T., and Varshavsky, A. (1999) EMBO J. 18, 6017-6026
29. Prakash, S., Tian, L., Ratliff, K. S., Lehotzky, R. E., and Matouschek, A. (2004) Nat. Struct. Mol. Biol. 11, 830-837
30. Baker, R. T., and Varshavsky, A. (1995) J. Biol. Chem. 270, 12065-12074
31. Kwon, Y. T., Balogh, S. A., Davydov, I. V., Kashina, A. S., Yoon, J. K., Xie, Y., Gaur, A., Hyde, L., Denenberg, V. H., and Varshavsky, A. (2000) Mol. Cell. Biol. 20, 4135-4148
32. Balzi, E., Choder, M., Chen, W., Varshavsky, A., and Goffeau, A. (1990) J. Biol. Chem. 265, 7464-7471
33. Li, J., and Pickart, C. M. (1995) Biochemistry 34, 15829-15837
34. Kwon, Y. T., Kashina, A. S., and Varshavsky, A. (1999) Mol. Cell. Biol. 19, 182-193
35. Davydov, I. V., and Varshavsky, A. (2000) J. Biol. Chem. 275, 22931-22941
36. Kwon, Y. T., Kashina, A. S., Davydov, I. V., Hu, R.-G., An, J. Y., Seo, J. W., Du, F., and Varshavsky, A. (2002) Science 297, 96-99
37. Lee, M. J., Tasaki, T., Moroi, K., An, J. Y., Kimura, S., Davydov, I. V., and Kwon, Y. T. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 15030-15035
38. Kwon, Y. T., Xia, Z., Davydov, I. V., Lecker, S. H., and Varshavsky, A. (2001) Mol. Cell. Biol. 21, 8007-8021
39. An, J. Y., Seo, J. W., Tasaki, T., Lee, M. J., Varshavsky, A., and Kwon, Y. T. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 6212-6217
40. Xie, Y., and Varshavsky, A. (1999) EMBO J. 18, 6832-6844
41. Du, F., Navarro-Garcia, F., Xia, Z., Tasaki, T., and Varshavsky, A. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 14110-14115
42. Siepmann, T. J., Bohnsack, R. N., Tokgoz, Z., Baboshina, O. V., and Haas, A. L. (2003) J. Biol. Chem. 278, 9448-9457
43. Gonda, D. K., Bachmair, A., Wünning, I., Tobias, J. W., Lane, W. S., and Varshavsky, A. (1989) J. Biol. Chem. 264, 16700-16712
44. Tobias, J. W., Shrader, T. E., Rocap, G., and Varshavsky, A. (1991) Science 254, 1374-1377
45. Shrader, T. E., Tobias, J. W., and Varshavsky, A. (1993) J. Bacteriol. 175, 4364-4374
46. Erbse, A., Schmidt, R., Bornemann, T., Schneider-Mergener, J., Mogk, A., Zahn, R., Dougan, D. A., and Bukau, B. (2005) Nature 439, 753-756
47. Graciet, E., Hu, R. G., Piatkov, K., Rhee, J. H., Schwarz, E. M., and Varshavsky, A. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 3078-3083
48. Varshavsky, A. (2004) Curr. Biol. 14, R181-R183
49. Turner, G. C., Du, F., and Varshavsky, A. (2000) Nature 405, 579-583
50. Rao, H., Uhlmann, F., Nasmyth, K., and Varshavsky, A. (2001) Nature 410, 955-960
51. Ditzel, M., Wilson, R., Tenev, T., Zachariou, A., Paul, A., Deas, E., and Meier, P. (2003) Nat. Cell Biol. 5, 467-473
52. Varshavsky, A. (2003) Nat. Cell Biol. 5, 373-376
53. Yoshida, S., Ito, M., Gallis, J., Nishida, I., and Watanabe, A. (2002) Plant J. 32, 129-137
54. Zenker, M., Mayerle, J., Lerch, M. M., Tagariello, A., Zerres, K., Durie, P. R., Beier, M., Hülskamp, G., Guzman, C., Rehder, H., Beemer, F. A., Hamel, B., Vanlieferinghen, P., Gershoni-Baruch, R., Vieira, M. W., Dumic, M., Auslender, R., Gil-da-Silva-Lopes, V. L., Steinlicht, S., Rauh, R., Shalev, S. A., Thiel, C., Winterpacht, A., Kwon, Y. T., Varshavsky, A., and Reis, A. (2005) Nat. Genet. 37, 1345-1350
55. Uhlmann, F., Lottspeich, F., and Nasmyth, K. (1999) Nature 400, 37-42
56. Hauf, S., Waizenegger, I. C., and Peters, J.-M. (2001) Science 293, 1320-1323
57. Stockton, J. D., Merkert, M. C., and Kellaris, K. V. (2003) Biochemistry 42, 12821-12834
58. Turano, C., Coppari, S., Altieri, F., and Ferraro, A. (2002) J. Cell. Physiol. 193, 154-163
59. Sun, F. C., Wei, S., Li, C. W., Chang, Y. S., Chao, C. C., and Lai, Y. K. (2006) Biochem. J. 396, 31-39
60. Grune, T., Reinheckel, T., Li, R., North, J. A., and Davies, K. J. A. (2002) Arch. Biochem. Biophys. 397, 407-413
61. Rai, R., and Kashina, A. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 10123-10128
62. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Smith, J. A., Seidman, J. G., and Struhl, K. (2002) Current Protocols in Molecular Biology, Wiley-Interscience, New York
63. Ghislain, M., Dohmen, R. J., Levy, F., and Varshavsky, A. (1996) EMBO J. 15, 4884-4899
64. Mumberg, D., Muller, R., and Funk, M. (1994) Nucleic Acids Res. 22, 5767-5768
65. Varshavsky, A. (2005) Methods Enzymol. 399, 777-799
66. Baker, R. T., and Varshavsky, A. (1991) Proc. Natl. Acad. Sci. U. S. A. 87, 2374-2378
67. Lev-Maor, G., Sorek, R., Shomron, N., and Ast, G. (2003) Science 300, 1288-1291
68. Lynch, M., Koskella, B., and Schaack, S. (2006) Science 311, 1727-1730
69. Patton, J., Block, S., Coombs, C., and Martin, M. E. (2006) Gene (Amst.) 369, 35-44
70. Emoto, M., Miki, M., Sarker, A. H., Nakamura, T., Seki, Y., Seki, S., and Ikeda, S. (2005) Gene (Amst.) 357, 47-54
71. Travers, M. T., Cambot, M., Kennedy, H. T., Lenoir, G. M., Barber, M. C., and Joulin, V. (2005) Genomics 85, 71-84
72. Saleh, A., Davies, G. E., Pascal, V., Wright, P. W., Hodge, D. L., Cho, E. H., Lockett, S. J., Abshari, M., and Anderson, S. K. (2004) Immunity 21, 55-66
73. Meier-Noorden, M., Flindt, S., Kalinke, U., and Hinz, T. (2004) Gene (Amst.) 338, 197-207
74. Whitehouse, C., Chambers, J., Catteau, A., and Solomon, E. (2004) Gene (Amst.) 326, 87-96
75. Trinklein, N. D., Aldred, S. F., Hartman, S. J., Schroeder, D. I., Otillar, R. P., and Myers, R. M. (2004) Genome Res. 14, 62-66
76. Takai, D., and Jones, P. A. (2004) Mol. Biol. Evol. 21, 463-467
77. Adachi, N., and Lieber, M. R. (2002) Cell 109, 807-809
78. Stetefeld, J., and Ruegg, M. (2005) Trends Biochem. Sci. 30, 515-521
79. Maniatis, T., and Tasic, B. (2002) Nature 418, 236-243
80. Lareau, L. F., Green, R. E., Bhatnagar, R. S., and Brenner, S. E. (2004) Curr. Opin. Struct. Biol. 14, 273-282
81. Preger, E., Ziv, I., Shabtay, A., Sher, I., Tsang, M., Dawid, I. B., Altuvia, Y., and Ron, D. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 1229-1234
82. Trotter, K. W., Fraser, I. D. C., Scott, G. K., Stutts, M. J., Scott, J. D., and Milgram, S. L. (1999) J. Cell Biol. 147, 1481-1492
83. Vendel, A. C., Terry, M. D., Striegel, A. R., Iverson, N. M., Leuranguer, V., Rithner, C. D., Lyons, B. A., Pickard, G. E., Tobet, S. A., and Horne, W. A. (2006) J. Neurosci. 26, 2635-2644
84. Schroder, M., and Kaufman, R. J. (2005) Annu. Rev. Biochem. 74, 739-789
85. Wilkinson, B., and Gilbert, H. F. (2004) Biochim. Biophys. Acta 1699, 35-44
86. Fire, A. (2006) Q. Rev. Biophys. 6, 1-7
87. Bradshaw, R. A., Brickey, W. W., and Walker, K. W. (1998) Trends Biochem. Sci. 23, 263-267