메뉴 건너뛰기




Volumn 44, Issue 2, 2007, Pages 105-122

How do obligate parasites evolve? A multi-gene phylogenetic analysis of downy mildews

Author keywords

Tubulin; Cytochrome oxidase; Downy mildews; LSU rDNA; NADH dehydrogenase; Obligate parasites; Oomycetes; Phylogenetic analysis; Phytophthora

Indexed keywords

ARTICLE; BASIDIOPHORA; BENUA; BRASSICACEAE; BREMIA; DOWNY MILDEW; ECOSYSTEM; FUNGAL PLANT DISEASE; FUNGUS; GENE LOCUS; GRAMINIVORA GRAMINICOLA; HYALOPERONOSPORA; NONHUMAN; NUCLEOTIDE SEQUENCE; OOMYCETES; PARAPERONOSPORA; PEROFASCIA; PERONOSPORA; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASE; PLANT FUNGUS INTERACTION; PLASMOPARA; PLASMOVERNA; PRIORITY JOURNAL; PROTOBREMIA; PYTHIUM; SCLEROSPORA GRAMINICOLA; STATISTICAL ANALYSIS; UNINDEXED SEQUENCE; VIENNOTIA OPLISMENI;

EID: 33845940105     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2006.07.005     Document Type: Article
Times cited : (126)

References (99)
  • 1
    • 0037329391 scopus 로고    scopus 로고
    • Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence
    • Alfaro M.E., Zoller S., and Lutzoni F. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol. Biol. Evol. 20 (2003) 255-266
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 255-266
    • Alfaro, M.E.1    Zoller, S.2    Lutzoni, F.3
  • 3
    • 0024093433 scopus 로고
    • Comparative studies on the DNA of Pythium species and some possibly related taxa
    • Belkhiri A., and Dick M.W. Comparative studies on the DNA of Pythium species and some possibly related taxa. J. Gen. Microbiol. 134 (1988) 2673-2683
    • (1988) J. Gen. Microbiol. , vol.134 , pp. 2673-2683
    • Belkhiri, A.1    Dick, M.W.2
  • 4
    • 20444491634 scopus 로고    scopus 로고
    • A review of long-branch attraction
    • Bergsten J. A review of long-branch attraction. Cladistics 21 (2005) 163-193
    • (2005) Cladistics , vol.21 , pp. 163-193
    • Bergsten, J.1
  • 5
    • 0001793266 scopus 로고    scopus 로고
    • The taxonomy of the powdery mildew fungi
    • Bélanger R.R., Bushnell W.R., Dik A.L., and Carver T.L.W. (Eds), APS Press, St. Paul
    • Braun U., Cook R.T.A., Inman A.J., and Shin H.-D. The taxonomy of the powdery mildew fungi. In: Bélanger R.R., Bushnell W.R., Dik A.L., and Carver T.L.W. (Eds). The Powdery Mildews. A Comprehensive Treatise (2002), APS Press, St. Paul 13-55
    • (2002) The Powdery Mildews. A Comprehensive Treatise , pp. 13-55
    • Braun, U.1    Cook, R.T.A.2    Inman, A.J.3    Shin, H.-D.4
  • 7
    • 0036213207 scopus 로고    scopus 로고
    • The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
    • Buckley T.R., and Cunningham C.W. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Mol. Biol. Evol. 19 (2002) 394-405
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 394-405
    • Buckley, T.R.1    Cunningham, C.W.2
  • 8
    • 0034520657 scopus 로고    scopus 로고
    • The life-cycle of Plasmopara viticola, cause of downy mildew of vine
    • Burruano S. The life-cycle of Plasmopara viticola, cause of downy mildew of vine. Mycologist 14 (2000) 179-182
    • (2000) Mycologist , vol.14 , pp. 179-182
    • Burruano, S.1
  • 9
    • 0013137666 scopus 로고
    • Studies on Phytophthora disease of litchi. I. Identification of causal agent
    • (in Chinese)
    • Chi P.-k., Pang X.-p., and Liu R. Studies on Phytophthora disease of litchi. I. Identification of causal agent. Proc. Annu. Meet. Chin. Phytopathol. Soc. 1981 (1982) 72-73 (in Chinese)
    • (1982) Proc. Annu. Meet. Chin. Phytopathol. Soc. , vol.1981 , pp. 72-73
    • Chi, P.-k.1    Pang, X.-p.2    Liu, R.3
  • 10
    • 1242322026 scopus 로고    scopus 로고
    • Diversity of the Hyaloperonospora parasitica complex from core brassicaceous hosts based on ITS rDNA sequences
    • Choi Y.-J., Hong S.-B., and Shin H.-D. Diversity of the Hyaloperonospora parasitica complex from core brassicaceous hosts based on ITS rDNA sequences. Mycol. Res. 107 (2003) 1314-1322
    • (2003) Mycol. Res. , vol.107 , pp. 1314-1322
    • Choi, Y.-J.1    Hong, S.-B.2    Shin, H.-D.3
  • 11
    • 23744441677 scopus 로고    scopus 로고
    • A reconsideration of Pseudoperonospora cubensis and P. humuli based on molecular and morphological data
    • Choi Y.-J., Hong S.-B., and Shin H.-D. A reconsideration of Pseudoperonospora cubensis and P. humuli based on molecular and morphological data. Mycol. Res. 109 (2005) 841-848
    • (2005) Mycol. Res. , vol.109 , pp. 841-848
    • Choi, Y.-J.1    Hong, S.-B.2    Shin, H.-D.3
  • 12
    • 0002148287 scopus 로고
    • Peronospora complex on Compositae
    • Constantinescu O. Peronospora complex on Compositae. Sydowia 41 (1989) 79-107
    • (1989) Sydowia , vol.41 , pp. 79-107
    • Constantinescu, O.1
  • 13
    • 0003184793 scopus 로고
    • An annotated list of Peronospora names
    • Constantinescu O. An annotated list of Peronospora names. Thunbergia 15 (1991) 1-110
    • (1991) Thunbergia , vol.15 , pp. 1-110
    • Constantinescu, O.1
  • 14
    • 0031953930 scopus 로고    scopus 로고
    • A revision of Basidiophora (Chromista, Peronosporales)
    • Constantinescu O. A revision of Basidiophora (Chromista, Peronosporales). Nova Hedwigia 66 (1998) 251-265
    • (1998) Nova Hedwigia , vol.66 , pp. 251-265
    • Constantinescu, O.1
  • 15
    • 0033919315 scopus 로고    scopus 로고
    • The fine structure of the sporangium in Pseudoperonospora humuli (Chromista, Oomycota, Peronosporales)
    • Constantinescu O. The fine structure of the sporangium in Pseudoperonospora humuli (Chromista, Oomycota, Peronosporales). Cryptogamie Mycol. 21 (2000) 93-101
    • (2000) Cryptogamie Mycol. , vol.21 , pp. 93-101
    • Constantinescu, O.1
  • 16
    • 0036329760 scopus 로고    scopus 로고
    • Peronospora-like fungi (Chromista, Peronosporales) parasitic on Brassicaceae and related hosts
    • Constantinescu O., and Fatehi J. Peronospora-like fungi (Chromista, Peronosporales) parasitic on Brassicaceae and related hosts. Nova Hedwigia 74 (2002) 291-338
    • (2002) Nova Hedwigia , vol.74 , pp. 291-338
    • Constantinescu, O.1    Fatehi, J.2
  • 17
    • 27144505239 scopus 로고    scopus 로고
    • Plasmoverna gen. nov., and the taxonomy and nomenclature of Plasmopara (Chromista, Peronosporales)
    • Constantinescu O., Voglmayr H., Fatehi J., and Thines M. Plasmoverna gen. nov., and the taxonomy and nomenclature of Plasmopara (Chromista, Peronosporales). Taxon (2005) 813-821
    • (2005) Taxon , pp. 813-821
    • Constantinescu, O.1    Voglmayr, H.2    Fatehi, J.3    Thines, M.4
  • 19
    • 0242556092 scopus 로고    scopus 로고
    • An ITS-based phylogenetic analysis of the relationships between Peronospora and Phytophthora
    • Spencer-Phillips P.T.N., Gisi U., and Lebeda A. (Eds), Kluwer Academic Publishers, Dordrecht
    • Cooke D.E.L., Williams N.A., Williamson B., and Duncan J.M. An ITS-based phylogenetic analysis of the relationships between Peronospora and Phytophthora. In: Spencer-Phillips P.T.N., Gisi U., and Lebeda A. (Eds). Advances in Downy Mildew Research (2002), Kluwer Academic Publishers, Dordrecht 161-165
    • (2002) Advances in Downy Mildew Research , pp. 161-165
    • Cooke, D.E.L.1    Williams, N.A.2    Williamson, B.3    Duncan, J.M.4
  • 20
    • 0000201050 scopus 로고
    • Researches into the nature of the potato fungus, Phytophthora infestans
    • De Bary A. Researches into the nature of the potato fungus, Phytophthora infestans. J. R. Agric. Soc. 12 (1876) 239-269
    • (1876) J. R. Agric. Soc. , vol.12 , pp. 239-269
    • De Bary, A.1
  • 22
    • 4043144336 scopus 로고    scopus 로고
    • Towards an understanding of the evolution of the downy mildews
    • Spencer-Phillips P.T.N., Gisi U., and Lebeda A. (Eds), Kluwer Academic Publishers, Dordrecht/Boston/London
    • Dick M.W. Towards an understanding of the evolution of the downy mildews. In: Spencer-Phillips P.T.N., Gisi U., and Lebeda A. (Eds). Advances in Downy Mildew Research Vol. 2 (2002), Kluwer Academic Publishers, Dordrecht/Boston/London 1-57
    • (2002) Advances in Downy Mildew Research , vol.2 , pp. 1-57
    • Dick, M.W.1
  • 23
    • 0037329108 scopus 로고    scopus 로고
    • Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
    • Douady C.J., Delsuc F., Boucher Y., Doolittle W.F., and Douzery E.J.P. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 20 (2003) 248-254
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 248-254
    • Douady, C.J.1    Delsuc, F.2    Boucher, Y.3    Doolittle, W.F.4    Douzery, E.J.P.5
  • 24
    • 0011156612 scopus 로고
    • Die Entfaltungsregel und andere Gesetzmäßigkeiten in den parasitologischen Beziehungen der Mallophagen und anderer ständiger Parasiten zu ihren Wirten
    • Eichler W. Die Entfaltungsregel und andere Gesetzmäßigkeiten in den parasitologischen Beziehungen der Mallophagen und anderer ständiger Parasiten zu ihren Wirten. Zool. Anz. 137 (1942) 77-83
    • (1942) Zool. Anz. , vol.137 , pp. 77-83
    • Eichler, W.1
  • 25
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • Erixon P., Svennblad B., Britton T., and Oxelman B. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 52 (2003) 664-673
    • (2003) Syst. Biol. , vol.52 , pp. 664-673
    • Erixon, P.1    Svennblad, B.2    Britton, T.3    Oxelman, B.4
  • 27
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • Farris J.S. The retention index and the rescaled consistency index. Cladistics 5 (1989) 417-419
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 28
    • 84959798530 scopus 로고
    • Cases in which parsimony and compatibility methods will be positively misleading
    • Felsenstein J. Cases in which parsimony and compatibility methods will be positively misleading. Syst. Zool. 27 (1978) 401-410
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 29
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (1981) 368-376
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 30
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 32
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: minimal change for a specified tree topology
    • Fitch W.M. Towards defining the course of evolution: minimal change for a specified tree topology. Syst. Zool. 20 (1971) 406-416
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 33
    • 0002763328 scopus 로고
    • Haustoria of the Peronosporales
    • Fraymouth J. Haustoria of the Peronosporales. Trans. Br. Mycol. Soc. 39 (1956) 79-107
    • (1956) Trans. Br. Mycol. Soc. , vol.39 , pp. 79-107
    • Fraymouth, J.1
  • 34
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ, an improved version of the NJ algorithm based on a simple model of sequence data
    • Gascuel O. BIONJ, an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14 (1997) 685-695
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 35
    • 0001059578 scopus 로고
    • Über die Formen der Peronospora parasitica (Pers.) Fries
    • Gäumann E. Über die Formen der Peronospora parasitica (Pers.) Fries. Beih. Bot. Zentralblatt 35 (1918) 395-533
    • (1918) Beih. Bot. Zentralblatt , vol.35 , pp. 395-533
    • Gäumann, E.1
  • 36
    • 0002688637 scopus 로고
    • Beiträge zu einer Monographie der Gattung Peronospora Corda
    • Gäumann E. Beiträge zu einer Monographie der Gattung Peronospora Corda. Beitr. Kryptogamenfl. Schweiz 5 (1923) 1-360
    • (1923) Beitr. Kryptogamenfl. Schweiz , vol.5 , pp. 1-360
    • Gäumann, E.1
  • 38
    • 5344279619 scopus 로고    scopus 로고
    • Taxonomic aspects of Peronosporaceae inferred from Bayesian molecular phylogenetics
    • Göker M., Voglmayr H., Riethmüller A., Weiß M., and Oberwinkler F. Taxonomic aspects of Peronosporaceae inferred from Bayesian molecular phylogenetics. Can. J. Bot. 81 (2003) 672-683
    • (2003) Can. J. Bot. , vol.81 , pp. 672-683
    • Göker, M.1    Voglmayr, H.2    Riethmüller, A.3    Weiß, M.4    Oberwinkler, F.5
  • 39
    • 4644337958 scopus 로고    scopus 로고
    • Phylogeny of Hyaloperonospora based on nuclear ribosomal internal transcribed spacer sequences
    • Göker M., Riethmüller A., Voglmayr H., Weiß M., and Oberwinkler F. Phylogeny of Hyaloperonospora based on nuclear ribosomal internal transcribed spacer sequences. Mycol. Prog. 3 (2004) 83-94
    • (2004) Mycol. Prog. , vol.3 , pp. 83-94
    • Göker, M.1    Riethmüller, A.2    Voglmayr, H.3    Weiß, M.4    Oberwinkler, F.5
  • 40
    • 33845919165 scopus 로고    scopus 로고
    • Greuter, W., McNeill, J., Barrie, F.R., Burdet, H.M., Demoulin, V., Filgueiras, T.S., Nicolson, D.H., Silva, P.C., Skog, J.E., Trehane, P., Turland, N.J., Hawksworth, D.L. (Eds.), 2000. International Code of Botanical Nomenclature (Saint Louis Code) adopted by the XVI International Botanical Congress, St. Louis, Missouri, July-August 1999. Regnum Vegetabile 138. Koeltz Scientific Books, Königstein, Germany.
  • 41
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 42
    • 0002920785 scopus 로고
    • Studies on Nordic Peronosporas. I. Taxonomic revision
    • Gustavsson A. Studies on Nordic Peronosporas. I. Taxonomic revision. Opera Bot. 3 (1959) 1-271
    • (1959) Opera Bot. , vol.3 , pp. 1-271
    • Gustavsson, A.1
  • 43
    • 0002920785 scopus 로고
    • Studies on Nordic Peronosporas. II. General account
    • Gustavsson A. Studies on Nordic Peronosporas. II. General account. Opera Bot. 3 (1959) 1-61
    • (1959) Opera Bot. , vol.3 , pp. 1-61
    • Gustavsson, A.1
  • 44
    • 0030301268 scopus 로고    scopus 로고
    • Modern approaches to species concepts in downy mildews
    • Hall G.S. Modern approaches to species concepts in downy mildews. Plant Pathol. 45 (1996) 1009-1026
    • (1996) Plant Pathol. , vol.45 , pp. 1009-1026
    • Hall, G.S.1
  • 46
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis D.M., and Bull J.J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 47
    • 0242669921 scopus 로고    scopus 로고
    • Is sparse taxon sampling a problem for phylogenetic inference?
    • Hillis D.M., Pollock D.D., McGuire J.A., and Zwickl D.J. Is sparse taxon sampling a problem for phylogenetic inference?. Syst. Biol. 52 (2003) 124-126
    • (2003) Syst. Biol. , vol.52 , pp. 124-126
    • Hillis, D.M.1    Pollock, D.D.2    McGuire, J.A.3    Zwickl, D.J.4
  • 48
    • 0008375355 scopus 로고
    • Halophytophthora, gen. nov., a new member of the family Pythiaceae
    • Ho H.H., and Jong S.C. Halophytophthora, gen. nov., a new member of the family Pythiaceae. Mycotaxon 36 (1990) 377-382
    • (1990) Mycotaxon , vol.36 , pp. 377-382
    • Ho, H.H.1    Jong, S.C.2
  • 49
    • 0036897646 scopus 로고    scopus 로고
    • Delta plots, a tool for analysing phylogenetic distance data
    • Holland B., Huber K.T., Dress A., and Moulton V. Delta plots, a tool for analysing phylogenetic distance data. Mol. Biol. Evol. 19 (2002) 2051-2059
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2051-2059
    • Holland, B.1    Huber, K.T.2    Dress, A.3    Moulton, V.4
  • 50
    • 0033210889 scopus 로고    scopus 로고
    • Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly
    • Hopple J.S., and Vilgalys R. Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal subunit RNA: divergent domains, outgroups, and monophyly. Mol. Phylogenet. Evol. 13 (1999) 1-19
    • (1999) Mol. Phylogenet. Evol. , vol.13 , pp. 1-19
    • Hopple, J.S.1    Vilgalys, R.2
  • 51
    • 0001215062 scopus 로고
    • The isolation and culture of Gymnosporangium juniperi-virginianae Schw. upon artificial media
    • Hottson H.H., and Cutter V.M. The isolation and culture of Gymnosporangium juniperi-virginianae Schw. upon artificial media. Proc. Natl. Acad. Sci. USA 37 (1951) 400-403
    • (1951) Proc. Natl. Acad. Sci. USA , vol.37 , pp. 400-403
    • Hottson, H.H.1    Cutter, V.M.2
  • 52
    • 0000767768 scopus 로고    scopus 로고
    • A cox2 phylogeny of the Peronosporomycetes (Oomycetes)
    • Hudspeth D.S.S., Nadler S.A., and Hudspeth M.E.S. A cox2 phylogeny of the Peronosporomycetes (Oomycetes). Mycologia 92 (2000) 674-684
    • (2000) Mycologia , vol.92 , pp. 674-684
    • Hudspeth, D.S.S.1    Nadler, S.A.2    Hudspeth, M.E.S.3
  • 53
    • 4143098263 scopus 로고    scopus 로고
    • A cox2 phylogenetic hypothesis for the downy mildews and white rusts
    • Hudspeth D.S.S., Stenger D., and Hudspeth M.E.S. A cox2 phylogenetic hypothesis for the downy mildews and white rusts. Fungal Divers. 13 (2003) 47-57
    • (2003) Fungal Divers. , vol.13 , pp. 47-57
    • Hudspeth, D.S.S.1    Stenger, D.2    Hudspeth, M.E.S.3
  • 54
    • 11144277878 scopus 로고    scopus 로고
    • Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
    • Huelsenbeck J.P., and Rannala B. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 53 (2004) 904-913
    • (2004) Syst. Biol. , vol.53 , pp. 904-913
    • Huelsenbeck, J.P.1    Rannala, B.2
  • 55
    • 4644299089 scopus 로고    scopus 로고
    • The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated
    • Jermiin L.S., Ho S.Y.W., Ababneh F., Robinson J., and Larkum A.W.D. The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated. Syst. Biol. 53 (2004) 638-643
    • (2004) Syst. Biol. , vol.53 , pp. 638-643
    • Jermiin, L.S.1    Ho, S.Y.W.2    Ababneh, F.3    Robinson, J.4    Larkum, A.W.D.5
  • 56
    • 33845928651 scopus 로고    scopus 로고
    • Jobb, G., 2005. TREEFINDER version of October 2005. Munich, Germany. Distributed by the author at www.treefinder.de.
  • 57
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER, a powerful graphical analysis environment for molecular phylogenetics
    • Jobb G., von Haeseler A., and Strimmer K. TREEFINDER, a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 4 (2004) 18
    • (2004) BMC Evol. Biol. , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 58
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K., Misawa K., Kuma K., and Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30 (2002) 3059-3066
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 59
    • 84959806898 scopus 로고
    • A concern for evidence and the phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    • Kluge A.G. A concern for evidence and the phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38 (1989) 7-25
    • (1989) Syst. Zool. , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 61
    • 0000129603 scopus 로고
    • Evolutionary analysis of length-variable sequences: divergent domains of ribosomal RNA
    • Miyamoto M.M., and Cracraft J. (Eds), Oxford University Press, New York
    • Larson A. Evolutionary analysis of length-variable sequences: divergent domains of ribosomal RNA. In: Miyamoto M.M., and Cracraft J. (Eds). Phylogenetic Analysis of DNA Sequences (1991), Oxford University Press, New York 221-248
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 221-248
    • Larson, A.1
  • 62
    • 13444305471 scopus 로고    scopus 로고
    • Molecular phylogeny and taxonomy of the genus Pythium
    • Lévesque C.A., and De Cock A.W.A.M. Molecular phylogeny and taxonomy of the genus Pythium. Mycol. Res. 108 (2004) 1363-1383
    • (2004) Mycol. Res. , vol.108 , pp. 1363-1383
    • Lévesque, C.A.1    De Cock, A.W.A.M.2
  • 63
    • 0032922985 scopus 로고    scopus 로고
    • Soilborne plant diseases caused by Pythium spp.: ecology, epidemiology, and prospects for biological control
    • Martin F.N., and Loper J.E. Soilborne plant diseases caused by Pythium spp.: ecology, epidemiology, and prospects for biological control. Crit. Rev. Plant Sci. 18 (1999) 111-181
    • (1999) Crit. Rev. Plant Sci. , vol.18 , pp. 111-181
    • Martin, F.N.1    Loper, J.E.2
  • 64
    • 0037260815 scopus 로고    scopus 로고
    • Phytophthora cinnamomi causing disease in subalpine vegetation in New South Wales
    • McDougall K.L., Summerell B.A., Coburn D., and Newton M. Phytophthora cinnamomi causing disease in subalpine vegetation in New South Wales. Aust. Plant Pathol. 32 (2003) 113-115
    • (2003) Aust. Plant Pathol. , vol.32 , pp. 113-115
    • McDougall, K.L.1    Summerell, B.A.2    Coburn, D.3    Newton, M.4
  • 65
    • 33845926730 scopus 로고
    • The distribution of downy mildews on higher plant taxa
    • Spencer D.M. (Ed), Academic Press, London
    • Palti J., and Kenneth R. The distribution of downy mildews on higher plant taxa. In: Spencer D.M. (Ed). The Downy Mildews (1981), Academic Press, London 45-56
    • (1981) The Downy Mildews , pp. 45-56
    • Palti, J.1    Kenneth, R.2
  • 66
    • 0019977927 scopus 로고
    • Towards a basis for classification: the incompleteness of distance measures, incompatibility analysis and phenetic classification
    • Penny D. Towards a basis for classification: the incompleteness of distance measures, incompatibility analysis and phenetic classification. J. Theor. Biol. 96 (1982) 129-142
    • (1982) J. Theor. Biol. , vol.96 , pp. 129-142
    • Penny, D.1
  • 67
    • 3042550872 scopus 로고    scopus 로고
    • Genome-scale phylogeny and the detection of systematic biases
    • Phillips M.J., Delsuc F., and Penny D. Genome-scale phylogeny and the detection of systematic biases. Mol. Biol. Evol. 21 (2004) 1455-1458
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1455-1458
    • Phillips, M.J.1    Delsuc, F.2    Penny, D.3
  • 68
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests
    • Posada D., and Buckley T.R. Model selection and model averaging in phylogenetics: advantages of the AIC and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53 (2004) 793-808
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 69
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 70
    • 33845953577 scopus 로고    scopus 로고
    • Rambaut, A., 1996. Se-Al, Sequence Alignment Editor. Available at http://evolve.zoo.ox.ac.uk/.
  • 71
    • 0033501910 scopus 로고    scopus 로고
    • Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit DNA sequences
    • Riethmüller A., Weiß M., and Oberwinkler F. Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit DNA sequences. Can. J. Bot. 77 (1999) 1790-1800
    • (1999) Can. J. Bot. , vol.77 , pp. 1790-1800
    • Riethmüller, A.1    Weiß, M.2    Oberwinkler, F.3
  • 72
    • 0036769336 scopus 로고    scopus 로고
    • Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences
    • Riethmüller A., Voglmayr H., Göker M., Weiß M., and Oberwinkler F. Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia 94 (2002) 834-849
    • (2002) Mycologia , vol.94 , pp. 834-849
    • Riethmüller, A.1    Voglmayr, H.2    Göker, M.3    Weiß, M.4    Oberwinkler, F.5
  • 73
    • 0031875195 scopus 로고    scopus 로고
    • Sensitivity of the relative-rate test to taxonomic sampling
    • Robinson M., Gouy M., Gautier C., and Mouchiroud D. Sensitivity of the relative-rate test to taxonomic sampling. Mol. Biol. Evol. 15 (1998) 1091-1098
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1091-1098
    • Robinson, M.1    Gouy, M.2    Gautier, C.3    Mouchiroud, D.4
  • 74
    • 0034129663 scopus 로고    scopus 로고
    • RRTree: relative-rate tests between groups of sequences on a phylogenetic tree
    • Robinson-Rechavi M., and Huchon D. RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16 (2000) 296-297
    • (2000) Bioinformatics , vol.16 , pp. 296-297
    • Robinson-Rechavi, M.1    Huchon, D.2
  • 75
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A., and Carroll S.B. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 22 (2005) 1337-1344
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 76
    • 0035845536 scopus 로고    scopus 로고
    • Incomplete taxon sampling is not a problem for phylogenetic inference
    • Rosenberg M.S., and Kumar S. Incomplete taxon sampling is not a problem for phylogenetic inference. Proc. Natl. Acad. Sci. USA 98 (2001) 10751-10756
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 10751-10756
    • Rosenberg, M.S.1    Kumar, S.2
  • 77
    • 0000284135 scopus 로고
    • Evolution of the rust fungi (Uredinales) as reflected by their ecological problems
    • Savile D.B.O. Evolution of the rust fungi (Uredinales) as reflected by their ecological problems. Evol. Biol. 9 (1976) 137-205
    • (1976) Evol. Biol. , vol.9 , pp. 137-205
    • Savile, D.B.O.1
  • 79
    • 0001360105 scopus 로고
    • Taxonomie der Gattungen der Familie Peronosporaceae
    • Skalický V. Taxonomie der Gattungen der Familie Peronosporaceae. Preslia 38 (1966) 117-129
    • (1966) Preslia , vol.38 , pp. 117-129
    • Skalický, V.1
  • 80
    • 0003046474 scopus 로고    scopus 로고
    • The AIDS pandemic is new, but is HIV not new?
    • Siddall M.E. The AIDS pandemic is new, but is HIV not new?. Cladistics 13 (1997) 267-273
    • (1997) Cladistics , vol.13 , pp. 267-273
    • Siddall, M.E.1
  • 81
  • 82
    • 1242352069 scopus 로고    scopus 로고
    • How meaningful are Bayesian support values?
    • Simmons M.P., Pickett K.M., and Miya M. How meaningful are Bayesian support values?. Mol. Biol. Evol. 21 (2004) 188-199
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 188-199
    • Simmons, M.P.1    Pickett, K.M.2    Miya, M.3
  • 83
    • 33645223441 scopus 로고    scopus 로고
    • The composition and taxonomic significance of fatty acid patterns in three white rust species: Albugo amaranthi, A. candida and A. tragopogonis (Peronosporales, Albuginaceae)
    • Spring O., Haas K., Lamla I., Thurnhofer, Saskia, and Vetter W. The composition and taxonomic significance of fatty acid patterns in three white rust species: Albugo amaranthi, A. candida and A. tragopogonis (Peronosporales, Albuginaceae). Mycol. Prog. 4 (2005) 179-184
    • (2005) Mycol. Prog. , vol.4 , pp. 179-184
    • Spring, O.1    Haas, K.2    Lamla, I.3    Thurnhofer4    Saskia5    Vetter, W.6
  • 84
    • 0346852136 scopus 로고
    • Gedanken zu den parasitologischen Regeln und zur Evolution der Parasiten
    • Stammer H.J. Gedanken zu den parasitologischen Regeln und zur Evolution der Parasiten. Zool. Anzeiger 159 (1957) 255-267
    • (1957) Zool. Anzeiger , vol.159 , pp. 255-267
    • Stammer, H.J.1
  • 85
    • 0034350429 scopus 로고    scopus 로고
    • Invariable sites models and their use in phylogeny reconstruction
    • Steel M., Huson D., and Lockhart P.J. Invariable sites models and their use in phylogeny reconstruction. Syst. Biol. 49 (2000) 225-232
    • (2000) Syst. Biol. , vol.49 , pp. 225-232
    • Steel, M.1    Huson, D.2    Lockhart, P.J.3
  • 86
    • 0037058983 scopus 로고    scopus 로고
    • Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
    • Suzuki Y., Glazko G.V., and Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc. Natl. Acad. Sci. USA 99 (2002) 16138-16143
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 16138-16143
    • Suzuki, Y.1    Glazko, G.V.2    Nei, M.3
  • 87
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis D.M., Moritz C., and Mable B.K. (Eds), Sinauer Associates, Sunderland, Massachusetts
    • Swofford D.L., Olsen G.J., Waddell P.J., and Hillis D.M. Phylogenetic inference. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular Systematics (1996), Sinauer Associates, Sunderland, Massachusetts 407-514
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 88
    • 33845929135 scopus 로고    scopus 로고
    • Swofford, D.L., 2002. PAUP*, Phylogenetic analysis using parsimony (*and other methods), Version 4b10. Sinauer Associates, Sunderland, Massachusetts.
  • 89
    • 3242795999 scopus 로고    scopus 로고
    • An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data
    • Taylor D.J., and Piel W.H. An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data. Mol. Biol. Evol. 21 (2004) 1534-1537
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1534-1537
    • Taylor, D.J.1    Piel, W.H.2
  • 90
    • 23744453212 scopus 로고    scopus 로고
    • A revision of Albugo (Chromista, Peronosporomycetes)
    • Thines M., and Spring O. A revision of Albugo (Chromista, Peronosporomycetes). Mycotaxon 92 (2005) 443-458
    • (2005) Mycotaxon , vol.92 , pp. 443-458
    • Thines, M.1    Spring, O.2
  • 91
    • 33745953141 scopus 로고    scopus 로고
    • Thines, M., Göker, M., Spring, O., Oberwinkler, F., 2006. A revision of Bremia graminicola. Mycol. Res., in press.
  • 92
    • 0242495270 scopus 로고    scopus 로고
    • Phylogenetic relationships of Peronospora and related genera based on nuclear ribosomal ITS sequences
    • Voglmayr H. Phylogenetic relationships of Peronospora and related genera based on nuclear ribosomal ITS sequences. Mycol. Res. 107 (2003) 1132-1142
    • (2003) Mycol. Res. , vol.107 , pp. 1132-1142
    • Voglmayr, H.1
  • 93
    • 33745393454 scopus 로고    scopus 로고
    • Voglmayr, H., Riethmüller, A., 2006. Phylogenetic relationships of Albugo species (white blister rusts) based on LSU rDNA sequence and oospore data. Mycol. Res. 110 (in press).
  • 94
    • 5344260493 scopus 로고    scopus 로고
    • Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildews with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data
    • Voglmayr H., Riethmüller A., Göker M., Weiß M., and Oberwinkler F. Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildews with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data. Mycol. Res. 108 (2004) 1011-1024
    • (2004) Mycol. Res. , vol.108 , pp. 1011-1024
    • Voglmayr, H.1    Riethmüller, A.2    Göker, M.3    Weiß, M.4    Oberwinkler, F.5
  • 95
    • 0000802302 scopus 로고
    • Peronosporales
    • Ainsworth G.C., Sparrow F.K., and Sussman A.S. (Eds), Academic Press, New York
    • Waterhouse G.M. Peronosporales. In: Ainsworth G.C., Sparrow F.K., and Sussman A.S. (Eds). The Fungi-An Advanced Treatise (1973), Academic Press, New York 165-183
    • (1973) The Fungi-An Advanced Treatise , pp. 165-183
    • Waterhouse, G.M.1
  • 96
    • 0013092213 scopus 로고
    • The taxonomy of Pseudoperonospora
    • Waterhouse G.M., and Brothers M.P. The taxonomy of Pseudoperonospora. Mycol. Pap. 148 (1981) 1-28
    • (1981) Mycol. Pap. , vol.148 , pp. 1-28
    • Waterhouse, G.M.1    Brothers, M.P.2
  • 97
    • 0001867808 scopus 로고
    • Extinction, sampling, and molecular phylogenetics
    • Novacek M.J., and Wheeler Q.D. (Eds), Columbia University Press, New York
    • Wheeler W.C. Extinction, sampling, and molecular phylogenetics. In: Novacek M.J., and Wheeler Q.D. (Eds). Extinction and Phylogeny (1992), Columbia University Press, New York 205-215
    • (1992) Extinction and Phylogeny , pp. 205-215
    • Wheeler, W.C.1
  • 98
    • 0035339920 scopus 로고    scopus 로고
    • Molecular phylogenetics: state-of-the-art methods for looking into the past
    • Whelan S., Lio P., and Goldman N. Molecular phylogenetics: state-of-the-art methods for looking into the past. Trends Genet. 17 (2001) 262-272
    • (2001) Trends Genet. , vol.17 , pp. 262-272
    • Whelan, S.1    Lio, P.2    Goldman, N.3
  • 99
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl D.H., and Hillis D.M. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51 (2002) 588-598
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.H.1    Hillis, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.