메뉴 건너뛰기




Volumn 7, Issue 10, 2006, Pages

Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE RECEPTOR; ARABIDOPSIS PROTEIN; CELL SURFACE RECEPTOR;

EID: 33845613615     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2006-7-10-r96     Document Type: Article
Times cited : (75)

References (71)
  • 2
    • 3042622976 scopus 로고    scopus 로고
    • GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination
    • Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM: GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiol 2004, 135:907-915.
    • (2004) Plant Physiol , vol.135 , pp. 907-915
    • Chen, J.G.1    Pandey, S.2    Huang, J.3    Alonso, J.M.4    Ecker, J.R.5    Assmann, S.M.6    Jones, A.M.7
  • 3
    • 0037567299 scopus 로고    scopus 로고
    • The signal to move: D. discoideum go orienteering
    • Kimmel AR, Parent CA: The signal to move: D. discoideum go orienteering. Science 2003, 300:1525-1527.
    • (2003) Science , vol.300 , pp. 1525-1527
    • Kimmel, A.R.1    Parent, C.A.2
  • 4
    • 17644402459 scopus 로고    scopus 로고
    • Transduction of receptor signals by beta-arrestins
    • Lefkowitz RJ, Shenoy SK: Transduction of receptor signals by beta-arrestins. Science 2005, 308:512-517.
    • (2005) Science , vol.308 , pp. 512-517
    • Lefkowitz, R.J.1    Shenoy, S.K.2
  • 5
    • 3042798261 scopus 로고    scopus 로고
    • Molecular mechanisms of ligand binding, signaling, and regulation within the superfamily of G-protein-coupled receptors: Molecular modeling and mutagenesis approaches to receptor structure and function
    • Kristiansen K: Molecular mechanisms of ligand binding, signaling, and regulation within the superfamily of G-protein-coupled receptors: molecular modeling and mutagenesis approaches to receptor structure and function. Pharmacol Ther 2004, 103:21-80.
    • (2004) Pharmacol Ther , vol.103 , pp. 21-80
    • Kristiansen, K.1
  • 7
    • 84873464003 scopus 로고    scopus 로고
    • GPCRDB: Information System for G Protein-coupled Receptors
    • GPCRDB: Information System for G Protein-coupled Receptors [http:// www.gpcr.org/7tm/]
  • 8
    • 0032509484 scopus 로고    scopus 로고
    • Neurobiology of the Caenorhabditis elegans genome
    • Bargmann CI: Neurobiology of the Caenorhabditis elegans genome. Science 1998, 282:2028-2033.
    • (1998) Science , vol.282 , pp. 2028-2033
    • Bargmann, C.I.1
  • 11
    • 0030701839 scopus 로고    scopus 로고
    • Cloning of a putative G-protein-coupled receptor from Arabidopsis thaliana
    • Josefsson LG, Rask L: Cloning of a putative G-protein-coupled receptor from Arabidopsis thaliana. Eur J Biochem 1997, 249:415-420.
    • (1997) Eur J Biochem , vol.249 , pp. 415-420
    • Josefsson, L.G.1    Rask, L.2
  • 12
    • 2942694447 scopus 로고    scopus 로고
    • The Arabidopsis putative G protein-coupled receptor GCR1 interacts with the G protein alpha subunit GPA1 and regulates abscisic acid signaling
    • Pandey S, Assmann SM: The Arabidopsis putative G protein-coupled receptor GCR1 interacts with the G protein alpha subunit GPA1 and regulates abscisic acid signaling. Plant Cell 2004, 16:1616-1632.
    • (2004) Plant Cell , vol.16 , pp. 1616-1632
    • Pandey, S.1    Assmann, S.M.2
  • 13
    • 28544432826 scopus 로고    scopus 로고
    • A novel gene family in Arabidopsis encoding putative heptahelical transmembrane proteins homologous to human adiponectin receptors and progestin receptors
    • Hsieh M-H, Goodman HM: A novel gene family in Arabidopsis encoding putative heptahelical transmembrane proteins homologous to human adiponectin receptors and progestin receptors. J Exp Bot 2005, 56:3137-3147.
    • (2005) J Exp Bot , vol.56 , pp. 3137-3147
    • Hsieh, M.-H.1    Goodman, H.M.2
  • 15
    • 0035983672 scopus 로고    scopus 로고
    • Role of a heterotrimeric G protein in regulation of Arabidopsis seed germination
    • Ullah H, Chen JG, Wang S, Jones AM: Role of a heterotrimeric G protein in regulation of Arabidopsis seed germination. Plant Physiol 2002, 129:897-907.
    • (2002) Plant Physiol , vol.129 , pp. 897-907
    • Ullah, H.1    Chen, J.G.2    Wang, S.3    Jones, A.M.4
  • 16
    • 0032712930 scopus 로고    scopus 로고
    • Evidence for kinship between diverse G-protein coupled receptors
    • Josefsson LG: Evidence for kinship between diverse G-protein coupled receptors. Gene 1999, 239:333-340.
    • (1999) Gene , vol.239 , pp. 333-340
    • Josefsson, L.G.1
  • 17
    • 2942681717 scopus 로고    scopus 로고
    • Plants: The latest model system for G-protein research
    • Jones AM, Assmann SM: Plants: the latest model system for G-protein research. Embo Rep 2004, 5:572-578.
    • (2004) Embo Rep , vol.5 , pp. 572-578
    • Jones, A.M.1    Assmann, S.M.2
  • 18
    • 0344801103 scopus 로고
    • Occurrence in Saccharomyces cerevisiae of a gene homologous to the cDNA coding for the alpha subunit of mammalian G proteins
    • Nakafuku M, Itoh H, Nakamura S, Kaziro Y: Occurrence in Saccharomyces cerevisiae of a gene homologous to the cDNA coding for the alpha subunit of mammalian G proteins. Proc Natl Acad Sci USA 1987, 84:2140-2144.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 2140-2144
    • Nakafuku, M.1    Itoh, H.2    Nakamura, S.3    Kaziro, Y.4
  • 19
    • 0023972484 scopus 로고
    • Isolation of a second yeast Saccharomyces cerevisiae gene (GPA2) coding for guanine nucleotide-binding regulatory protein: Studies on its structure and possible functions
    • Nakafuku M, Obara T, Kaibuchi K, Miyajima I, Miyajima A, Itoh H, Nakamura S, Arai K, Matsumoto K, Kaziro Y: Isolation of a second yeast Saccharomyces cerevisiae gene (GPA2) coding for guanine nucleotide-binding regulatory protein: studies on its structure and possible functions. Proc Natl Acad Sci USA 1988, 85:1374-1378.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 1374-1378
    • Nakafuku, M.1    Obara, T.2    Kaibuchi, K.3    Miyajima, I.4    Miyajima, A.5    Itoh, H.6    Nakamura, S.7    Arai, K.8    Matsumoto, K.9    Kaziro, Y.10
  • 20
    • 0024966029 scopus 로고
    • The STE4 and STE18 genes of yeast encode potential beta and gamma subunits of the mating factor receptor-coupled G protein
    • Whiteway M, Hougan L, Dignard D, Thomas DY, Bell L, Saari GC, Grant FJ, O'Hara P, MacKay VL: The STE4 and STE18 genes of yeast encode potential beta and gamma subunits of the mating factor receptor-coupled G protein. Cell 1989, 56:467-477.
    • (1989) Cell , vol.56 , pp. 467-477
    • Whiteway, M.1    Hougan, L.2    Dignard, D.3    Thomas, D.Y.4    Bell, L.5    Saari, G.C.6    Grant, F.J.7    O'Hara, P.8    MacKay, V.L.9
  • 21
    • 0030882819 scopus 로고    scopus 로고
    • Overlapping functions for two G protein alpha subunits in Neurospora crassa
    • Baasiri RA, Lu X, Rowley PS, Turner GE, Borkovich KA: Overlapping functions for two G protein alpha subunits in Neurospora crassa. Genetics 1997, 147:137-145.
    • (1997) Genetics , vol.147 , pp. 137-145
    • Baasiri, R.A.1    Lu, X.2    Rowley, P.S.3    Turner, G.E.4    Borkovich, K.A.5
  • 22
    • 0027313265 scopus 로고
    • Identification of a G protein alpha subunit from Neurospora crassa that is a member of the Gi family
    • Turner GE, Borkovich KA: Identification of a G protein alpha subunit from Neurospora crassa that is a member of the Gi family. J Biol Chem 1993, 268:1 4805-1 4811.
    • (1993) J Biol Chem , vol.268 , pp. 14805-14811
    • Turner, G.E.1    Borkovich, K.A.2
  • 26
    • 27944509040 scopus 로고    scopus 로고
    • Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea
    • Kulkarni R, Thon M, Pan H, Dean R: Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea. Genome Biol 2005, 6:R24.
    • (2005) Genome Biol , vol.6
    • Kulkarni, R.1    Thon, M.2    Pan, H.3    Dean, R.4
  • 31
    • 33845679762 scopus 로고    scopus 로고
    • SMART 4.0
    • SMART 4.0 [http://smart.embl.de/]
  • 32
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough J, Karplus K, Hughey R, Chothia C: Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 2001, 313:903-919.
    • (2001) J Mol Biol , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 36
    • 33845668957 scopus 로고    scopus 로고
    • PRINTS [http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/]
  • 37
    • 0033665668 scopus 로고    scopus 로고
    • Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties
    • Kim J, Moriyama EN, Warr CG, Clyne PJ, Carlson JR: Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties. Bioinformatics 2000, 16:767-775.
    • (2000) Bioinformatics , vol.16 , pp. 767-775
    • Kim, J.1    Moriyama, E.N.2    Warr, C.G.3    Clyne, P.J.4    Carlson, J.R.5
  • 38
    • 84892199408 scopus 로고    scopus 로고
    • Protein family classification with discriminant function analysis
    • In Edited by: Gustafson JP, Shoemaker R, Snape JW. New York: Springer
    • Moriyama EN, Kim J: Protein family classification with discriminant function analysis. In Genome Exploitation: Data Mining the Genome Edited by: Gustafson JP, Shoemaker R, Snape JW. New York: Springer; 2005:121-132.
    • (2005) Genome Exploitation: Data Mining the Genome , pp. 121-132
    • Moriyama, E.N.1    Kim, J.2
  • 39
    • 0036166451 scopus 로고    scopus 로고
    • Classifying G-protein coupled receptors with support vector machines
    • Karchin R, Karplus K, Haussler D: Classifying G-protein coupled receptors with support vector machines. Bioinformatics 2002, 18:147-159.
    • (2002) Bioinformatics , vol.18 , pp. 147-159
    • Karchin, R.1    Karplus, K.2    Haussler, D.3
  • 40
    • 3242892058 scopus 로고    scopus 로고
    • GPCRpred: An SVM-based method for prediction of families and subfamilies of G-protein coupled receptors
    • Bhasin M, Raghava GP: GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors. Nucleic Acids Res 2004, 32:W383-389.
    • (2004) Nucleic Acids Res , vol.32
    • Bhasin, M.1    Raghava, G.P.2
  • 41
    • 33845673582 scopus 로고    scopus 로고
    • GPCRpred [http://www.imtech.res.in/raghava/gpcrpred/]
  • 42
    • 0036130770 scopus 로고    scopus 로고
    • Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences
    • Lapinsh M, Gutcaits A, Prusis P, Post C, Lundstedt T, Wikberg JES: Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences. Protein Sci 2002, 11:795-805.
    • (2002) Protein Sci , vol.11 , pp. 795-805
    • Lapinsh, M.1    Gutcaits, A.2    Prusis, P.3    Post, C.4    Lundstedt, T.5    Wikberg, J.E.S.6
  • 43
    • 33847341188 scopus 로고    scopus 로고
    • Protein family classification with partial least squares
    • in press
    • Opiyo SO, Moriyama EN: Protein family classification with partial least squares. J Proteome Res in press.
    • J Proteome Res
    • Opiyo, S.O.1    Moriyama, E.N.2
  • 44
    • 0037249498 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR): A model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
    • Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, et al.: The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 2003, 31:224-228.
    • (2003) Nucleic Acids Res , vol.31 , pp. 224-228
    • Rhee, S.Y.1    Beavis, W.2    Berardini, T.Z.3    Chen, G.4    Dixon, D.5    Doyle, A.6    Garcia-Hernandez, M.7    Huala, E.8    Lander, G.9    Montoya, M.10
  • 45
    • 84871345497 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource
    • The Arabidopsis Information Resource [http://www.arabidopsis.org]
  • 46
    • 0034786532 scopus 로고    scopus 로고
    • The HMMTOP transmembrane topology prediction server
    • Tusnady GE, Simon I: The HMMTOP transmembrane topology prediction server. Bioinformatics 2001, 17:849-850.
    • (2001) Bioinformatics , vol.17 , pp. 849-850
    • Tusnady, G.E.1    Simon, I.2
  • 47
    • 33845625125 scopus 로고    scopus 로고
    • HMMTOP [http://www.enzim.hu/hmmtop]
  • 49
    • 33244480581 scopus 로고    scopus 로고
    • Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo
    • Benton R, Sachse S, Michnick SW, Vosshall LB: Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo. PLoS Biol 2006, 4:e20.
    • (2006) PLoS Biol , vol.4
    • Benton, R.1    Sachse, S.2    Michnick, S.W.3    Vosshall, L.B.4
  • 53
    • 84875795505 scopus 로고    scopus 로고
    • UniProt: The Universal Protein Resource
    • UniProt: The Universal Protein Resource [http:/www.uniprot.org]
  • 54
    • 0029887381 scopus 로고    scopus 로고
    • Hidden Markov models for sequence analysis: Extension and analysis of the basic method
    • Hughey R, Krogh A: Hidden Markov models for sequence analysis: Extension and analysis of the basic method. Comput Appl Biosci 1996, 12:95-107.
    • (1996) Comput Appl Biosci , vol.12 , pp. 95-107
    • Hughey, R.1    Krogh, A.2
  • 55
    • 68149179570 scopus 로고    scopus 로고
    • SAM: Sequence Alignment and Modeling System
    • SAM: Sequence Alignment and Modeling System [http://www.cse.ucsc.edu/ research/compbio/sam.html]
  • 56
  • 57
    • 33845655901 scopus 로고    scopus 로고
    • S-plus MASS module
    • S-plus MASS module [http://www.stats.ox.ac.uk/pub/MASS4/]
  • 59
    • 0034048878 scopus 로고    scopus 로고
    • A discriminative framework for detecting remote protein homologies
    • Jaakkola T, Diekhans M, Haussler D: A discriminative framework for detecting remote protein homologies. J Comput Biol 2000, 7:95-114.
    • (2000) J Comput Biol , vol.7 , pp. 95-114
    • Jaakkola, T.1    Diekhans, M.2    Haussler, D.3
  • 60
    • 0002714543 scopus 로고    scopus 로고
    • Making large-Scale SVM learning practical
    • In Edited by: Schölkopf B, Burges C, Smola A. Cambridge: MIT Press
    • Joachims T: Making large-Scale SVM learning practical. In Advances in Kernel Methods - Support Vector Learning Edited by: Schölkopf B, Burges C, Smola A. Cambridge: MIT Press; 1999:169-184.
    • (1999) Advances in Kernel Methods - Support Vector Learning , pp. 169-184
    • Joachims, T.1
  • 61
    • 11144325691 scopus 로고
    • Partial least squares regression: A tutorial
    • Geladi P, Kowalski BR: Partial least squares regression: A tutorial. Anal Chim Acta 1986, 185:1-17.
    • (1986) Anal Chim Acta , vol.185 , pp. 1-17
    • Geladi, P.1    Kowalski, B.R.2
  • 62
    • 28444445926 scopus 로고    scopus 로고
    • R Development Core Team: Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team: R: A Language and Environment for Statistical Computing Vienna, Austria: R Foundation for Statistical Computing; 2005.
    • (2005) R: A Language and Environment for Statistical Computing
  • 63
    • 33845652557 scopus 로고    scopus 로고
    • pls: Partial Least Squares Regression (PLSR) and Principal Component Regression (PCR): R package version 1.2-1
    • pls: Partial Least Squares Regression (PLSR) and Principal Component Regression (PCR): R package version 1.2-1. [http://mevik.net/work/ software/pls.html]
  • 64
    • 0027215340 scopus 로고
    • DNA and peptide sequences and chemical processes multivariately modeled by principal component analysis and partial least-squares projections to latent structures
    • Wold S, Jonsson J, Sjostrom M, Sandberg M, Rannar S: DNA and peptide sequences and chemical processes multivariately modeled by principal component analysis and partial least-squares projections to latent structures. Anal Chim Acta 1993, 277:239-253.
    • (1993) Anal Chim Acta , vol.277 , pp. 239-253
    • Wold, S.1    Jonsson, J.2    Sjostrom, M.3    Sandberg, M.4    Rannar, S.5
  • 65
  • 66
    • 3042579686 scopus 로고    scopus 로고
    • Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
    • Viklund H, Elofsson A: Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information. Protein Sci 2004, 13:1908-1917.
    • (2004) Protein Sci , vol.13 , pp. 1908-1917
    • Viklund, H.1    Elofsson, A.2
  • 68
    • 33845638645 scopus 로고    scopus 로고
    • BLAST [http://www.ncbi.nlm.nih.gov/BLAST/]
  • 69
    • 13444264729 scopus 로고    scopus 로고
    • GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox
    • Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W: GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 2004, 136:2621-2632.
    • (2004) Plant Physiol , vol.136 , pp. 2621-2632
    • Zimmermann, P.1    Hirsch-Hoffmann, M.2    Hennig, L.3    Gruissem, W.4
  • 71
    • 33845599852 scopus 로고    scopus 로고
    • Arabidopsis thaliana 7TMR Mining
    • Arabidopsis thaliana 7TMR Mining [http://bioinfolab.uni.edu/emlab/at7tmr/ index.html]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.