Protein family classification with discriminant function analysis

Genome Exploitation: Data Mining the Genome

Volumn , Issue , 2005, Pages 121-132

  Moriyama, Etsuko N ^a   Kim, Junhyong ^b  

^a UNIVERSITY OF NEBRASKA   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84892199408     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/0-387-24187-6_9     Document Type: Chapter

References (9)

1. Altschul, S. F., Gish,W., Miller,W., Myers, E. W., and Lipman, D. J., 1990, Basic local alignment search tool, J Mol Biol. 215:403; http://www. ncbi. nlm. nih. gov/BLAST/.
2. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller,W., and Lipman, D. J., 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res. 25:3389; http://www. ncbi. nlm. nih. gov/BLAST/.
3. Attwood, T. K., Blythe, M., Flower, D. R., Gaulton, A., Mabey, J. E., Maudling, N., McGregor, L., Mitchell, A., Moulton, G., Paine, K., and Scordis, P., 2002, PRINTS and PRINTS-S shed light on protein ancestry, Nucleic Acids Res. 30:239; http://www. bioinf. man. ac. uk/dbbrowser/PRINTS/.
4. Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R., Griffiths-Jones, S., Howe, K. L., Marshall, M., and Sonnhammer, E. L. L., 2002, The Pfam protein families database, Nucleic Acids Res. 30:276; http://pfam. wustl. edu/index. html.
5. Falquet, L., Pagni, M., Bucher, P., Hulo, N., Sigrist, C. J., Hofmann, K., and Bairoch, A., 2002, The PROSITE database, its status in 2002. Nucleic Acids Res. 30:235; http://www. expasy. ch/prosite.
6. Kim, J., Moriyama, E. N., Warr, C. G., Clyne, P. J., and Carlson, J. R., 2000, Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties., Bioinformatics. 16:767.
7. Letunic, I., Goodstadt, L., Dickens, N. J., Doerks, T., Schultz, J., Mott, R., Ciccarelli, F., Copley, R. R., Ponting, C. P., and Bork, P., 2002, Recent improvements to the SMART domain-based sequence annotation resource, Nucleic Acids Res. 30:242; http://smart. embl-heidelberg. de/.
8. Engelman, D. M., Steitz, T. A., and Goldman, A., 1986, Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins, Annu. Rev. Biophys. Biophys. Chem. 15:321.
9. Venables, W. N., and Ripley, B. D., 2002, Modern Applied Statistics with S. Fourth Edition, Springer, New York.