29 Combining gnotobiotic mouse models with functional genomics to define the impact of the microflora on host physiology

Methods in Microbiology

Volumn 31, Issue , 2002, Pages 559-589

  Hooper, Lora V ^a   Mills, Jason C ^a   Roth, Kevin A ^a   Stappenbeck, Thaddeus S ^b   Wong, Melissa H ^b   Gordon, Jeffrey I ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b Washington University School of Medicine ^*

Author keywords

[No Author keywords available]

Indexed keywords

EID: 35448950558     PISSN: 05809517     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0580-9517(02)31030-4     Document Type: Review

References (35)

1. M.N. Bobrow T.D. Harris K.J. Shaughnessy G.J. Litt Catalyzed reporter deposition, a novel method of signal amplification. Application to immunoassays J. Immunol. Methods 125 1989 279 285
2. R.E. Bonner M. Emmert-Buck K. Cole T. Pohida R. Chuaqui S. Goldstein L.A. Liotta Laser capture microdissection: molecular analysis of tissue Science 278 1997 1481 1483
3. L. Bry P.G. Falk T. Midtvedt J.I Gordon A model of host-microbial interactions in an open mammalian ecosystem Science 273 1996 1380 1383
4. R.W. Burry Specificity controls for immunocytochemical methods J. Histochem. Cytochem. 48 2000 163 166
5. P. Carthew M.J. Wood C. Kirby Elimination of Sendai (parainfluenza type 1) virus infection in mice by embryo transfer J. Reprod. Fertil. 69 1983 253 257
6. J.M. Claverie Computational methods for the identification of differential and coordinated gene expression Hum. Mol. Genet. 8 1999 1821 1832
7. M.B. Eisen P.T. Spellman P.O. Brown D. Botstein Cluster analysis and display of genome-wide expression patterns Proc. Natl Acad. Sci. USA 95 1998 14863 14868
8. M.R. Emmert-Buck R.F. Bonner P.D. Smith R.F. Chuaqui Z. Zhuang S.R. Goldstein R.A. Weiss L.A. Liotta Laser capture microdissection Science 274 1996 998 1001
9. E. Fend M.R. Emmert-Buck R. Chuaqui K. Cole J. Lee L.A. Liotta M. Raffeld Immuno-LCM: laser capture microdissection of immunostained frozen sections for mRNA analysis Am. J. Pathol. 154 1999 61 66
10. T.L. Ferea P.O. Brown Observing the living genome Curr. Opin. Genet. Dev. 9 1999 715 722
11. S.M. Goldsworthy P.S. Stockton C.S. Trempus J.F. Foley R.R. Maronpot Effects of fixation on RNA extraction and amplification from laser capture microdissected tissue Mol. Carcinog. 25 1999 86 91
12. J.L. Guruge P.G. Falk R.G. Lorenz M. Dans H.P. Wirth M.J. Blaser D.E. Berg J.I. Gordon Epithelial attachment alters the outcome of Helicobacter pylori infection Proc. Natl Acad. Sci. USA 95 1998 3925 3930
13. B.E. Gustafsson Lightweight stainless steel systems for rearing germfree animals Ann. NY Acad. Sci. 78 1959 17 28
14. D.P. Harkin J.M. Bean D. Miklos Y.H. Song V.B. Truong C. Englert F.C. Christians L.W. Ellisen S. Maheswaran J.D. Oliner D.A. Haber Induction of GADD45 and JNK/SAPK-dependent apoptosis following inducible expression of BRCA1 Cell 97 1999 575 586
15. L.H. Hartwell J.J. Hopfield S. Leibler A.W. Murray From molecular to modular cell biology Nature 402 1999 C47 C52
16. C.A. Heid J. Stevens K.J. Livak P.M. Williams Real time quantitative PCR Genome Res. 6 1996 986 994
17. L.V. Hooper J. Xu P.G. Falk T. Midtvedt J.I. Gordon A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem Proc. Natl Acad. Sci. USA 96 1999 9833 9838
18. L.V. Hooper M.H. Wong A. Thelin L. Hansson P.G. Falk J.I. Gordon Molecular analysis of commensal host-microbial relationships in the intestine Science 291 2001 881 884
19. L. Jin C.A. Thompson X. Qiun S.J. Kuecker E. Kulig R.V. Lloyd Analysis of anterior pituitary hormone mRNA expression in immunophenotypically characterized single cells after laser capture microdissection Lab. Invest. 79 1999 511 512
20. P. Komminoth M. Werner Target and signal amplification: approaches to increase the sensitivity of in situ hybridization Histochem. Cell Biol. 108 1997 325 333
21. C.K. Lee R. Weindruch T.A. Prolla Gene-expression profile of the ageing brain in mice Nat. Genet. 25 2000 294 297
22. R.J. Lipshutz S.P. Fodor T.R. Gingeras D.J. Lockhart High density synthetic oligonucleotide arrays Nat. Genet. 21 1999 20 24
23. D.J. Lockhart E.A. Winzeler Genomics, gene expression and DNA arrays Nature 405 2000 827 836
24. L. Luo R.C. Salunga H. Guo A. Bittner K.C. Joy J.E. Galindo H. Xiao K.E. Rogers J.S. Wan M.R. Jackson M.G. Erlandert Gene expresion profiles of laser-captured adjacent neuronal subtypes Nat. Med. 5 1999 117 122
25. J.C. Mills J.I. Gordon A new approach for filtering noise from highdensity oligonucleotide microarray datasets Nucleic Acids Res. 29 2001 e72
26. H. Murakami L.A. Liotta R.A. Star IF-LCM: laser capture microdissection of immunofluorescently defined cells for mRNA analysis Kidney Int. 58 2000 1346 1353
27. K. Shindler K.A. Roth Double immunofluorescent staining using two unconjugated primary antisera raised in the same species J. Histochem. Cytochem. 44 1996 1331 1335
28. E.J.M. Speel A.A. Hopman P. Komminoth Amplification methods to increase the sensitivity of in situ hybridization: play CARD(S) J. Histochem. Cytochem. 47 1999 281 288
29. P. Tamayo D. Slonim J. Mesirov Q. Zhu S. Kitareewan E. Dmitrovsky E.S. Lander T.R. Golub Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation Proc. Natl Acad. Sci. USA 96 1999 2907 2912
30. P.C. Trexler L.I. Reynolds Flexible film apparatus for the rearing and use of germfree animals Appl. Microbiol. 5 1957 406 412
31. E. Wang L.D. Miller G.A. Ohnmacht E.T. Liu F.M. Marincola High-fidelity mRNA amplification for gene profiling Nat. Biotechnol. 18 2000 457 459
32. M.C. Willingham Conditional epitopes: is your antibody always specific? J. Histochem. Cytochem. 47 1999 1233 1235
33. M.H. Wong J.R. Saam T.S. Stappenbeck C.H. Rexer J.I. Gordon Genetic mosaic analysis based on cre recombinase and navigated laser capture microdissection Proc. Natl Acad. Sci. USA 97 2000 12601 12606
34. A.U. Zaidi H. Enomoto J. Milbrandt K.A. Roth Dual fluorescent in situ hybridization and immunohistochemical detection with tyramide signal amplification J. Histochem. Cytochem. 48 2000 1369 1376
35. H. Zhu J.P. Cong G. Mamtora T. Gingeras T. Shenk Cellular gene expression altered by human cytomegalovirus: global monitoring with oligonucleotide arrays Proc. Natl Acad. Sci. USA 95 1998 14470 14475