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Volumn 5, Issue 10, 2006, Pages 1780-1787

Global replication-independent histone H4 exchange in budding yeast

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; EPITOPE; HISTONE;

EID: 33750305242     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.00202-06     Document Type: Article
Times cited : (20)

References (45)
  • 1
    • 10644222646 scopus 로고    scopus 로고
    • The histone chaperone Asf1p mediates global chromatin disassembly in vivo
    • Adkins, M. W., and J. K. Tyler. 2004. The histone chaperone Asf1p mediates global chromatin disassembly in vivo. J. Biol. Chem. 279:52069-52074.
    • (2004) J. Biol. Chem. , vol.279 , pp. 52069-52074
    • Adkins, M.W.1    Tyler, J.K.2
  • 2
    • 31544446038 scopus 로고    scopus 로고
    • Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
    • Adkins, M. W., and J. K. Tyler. 2006. Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol. Cell 21:405-416.
    • (2006) Mol. Cell , vol.21 , pp. 405-416
    • Adkins, M.W.1    Tyler, J.K.2
  • 3
    • 0036299092 scopus 로고    scopus 로고
    • The histone variant H3.3 marks active chromatin by replication- independent nucleosome assembly
    • Ahmad, K., and S. Henikoff. 2002. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9:1191-1200.
    • (2002) Mol. Cell , vol.9 , pp. 1191-1200
    • Ahmad, K.1    Henikoff, S.2
  • 4
    • 1942502859 scopus 로고    scopus 로고
    • The nuclear Hat1p/Hat2p complex: A molecular link between type B histone acetyltransferases and chromatin assembly
    • Ai, X., and M. R. Parthun. 2004. The nuclear Hat1p/Hat2p complex: a molecular link between type B histone acetyltransferases and chromatin assembly. Mol. Cell 14:195-205.
    • (2004) Mol. Cell , vol.14 , pp. 195-205
    • Ai, X.1    Parthun, M.R.2
  • 5
    • 2942574467 scopus 로고    scopus 로고
    • Removal of promoter nucleosomes by disassembly rather than sliding in vivo
    • Boeger, H., J. Griesenbeck, J. S. Strattan, and R. D. Kornberg. 2004. Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Mol. Cell 14:667-673.
    • (2004) Mol. Cell , vol.14 , pp. 667-673
    • Boeger, H.1    Griesenbeck, J.2    Strattan, J.S.3    Kornberg, R.D.4
  • 6
    • 0029890667 scopus 로고    scopus 로고
    • Evidence that Spt6p controls chromatin structure by a direct interaction with histones
    • Bortvin, A., and F. Winston. 1996. Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science 272:1473-1476.
    • (1996) Science , vol.272 , pp. 1473-1476
    • Bortvin, A.1    Winston, F.2
  • 7
    • 31144445949 scopus 로고    scopus 로고
    • Dynamic regulation of replication independent deposition of histone H3 in fission yeast
    • Choi, E. S., J. A. Shin, H. S. Kim, and Y. K. Jang. 2005. Dynamic regulation of replication independent deposition of histone H3 in fission yeast. Nucleic Acids Res. 33:7102-7110.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 7102-7110
    • Choi, E.S.1    Shin, J.A.2    Kim, H.S.3    Jang, Y.K.4
  • 8
    • 0141530885 scopus 로고    scopus 로고
    • Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo
    • Green, C. M., and G. Almouzni. 2003. Local action of the chromatin assembly factor CAF-1 at sites of nucleotide excision repair in vivo. EMBO J. 22:5163-5174.
    • (2003) EMBO J. , vol.22 , pp. 5163-5174
    • Green, C.M.1    Almouzni, G.2
  • 10
    • 0033064318 scopus 로고    scopus 로고
    • Mapping chromatin structure in yeast
    • Gregory, P. D., and W. Horz. 1999. Mapping chromatin structure in yeast. Methods Enzymol. 304:365-376.
    • (1999) Methods Enzymol. , vol.304 , pp. 365-376
    • Gregory, P.D.1    Horz, W.2
  • 11
    • 0036200469 scopus 로고    scopus 로고
    • Identification and characterization of the genes encoding the core histones and histone variants of Neurospora crassa
    • Hays, S. M., J. Swanson, and E. U. Selker. 2002. Identification and characterization of the genes encoding the core histones and histone variants of Neurospora crassa. Genetics 160:961-973.
    • (2002) Genetics , vol.160 , pp. 961-973
    • Hays, S.M.1    Swanson, J.2    Selker, E.U.3
  • 12
    • 0142091385 scopus 로고    scopus 로고
    • Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo
    • Hoek, M., and B. Stillman. 2003. Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo. Proc. Natl. Acad. Sci. USA 100:12183-12188.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12183-12188
    • Hoek, M.1    Stillman, B.2
  • 14
    • 0025134076 scopus 로고
    • In vivo studies on the dynamics of histone-DNA interaction: Evidence for nucleosome dissolution during replication and transcription and a low level of dissolution independent of both
    • Jackson, V. 1990. In vivo studies on the dynamics of histone-DNA interaction: evidence for nucleosome dissolution during replication and transcription and a low level of dissolution independent of both. Biochemistry 29:719-731.
    • (1990) Biochemistry , vol.29 , pp. 719-731
    • Jackson, V.1
  • 15
    • 0019351449 scopus 로고
    • A new method for the isolation of replicative chromatin: Selective deposition of histone on both new and old DNA
    • Jackson, V., and R. Chalkley. 1981. A new method for the isolation of replicative chromatin: selective deposition of histone on both new and old DNA. Cell 23:121-134.
    • (1981) Cell , vol.23 , pp. 121-134
    • Jackson, V.1    Chalkley, R.2
  • 16
    • 0041828953 scopus 로고    scopus 로고
    • Transcription elongation factors repress transcription initiation from cryptic sites
    • Kaplan, C. D., L. Laprade, and F. Winston. 2003. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301:1096-1099.
    • (2003) Science , vol.301 , pp. 1096-1099
    • Kaplan, C.D.1    Laprade, L.2    Winston, F.3
  • 17
    • 0031043134 scopus 로고    scopus 로고
    • Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I
    • Kaufman, P. D., R. Kobayashi, and B. Stillman. 1997. Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev. 11:345-357.
    • (1997) Genes Dev. , vol.11 , pp. 345-357
    • Kaufman, P.D.1    Kobayashi, R.2    Stillman, B.3
  • 18
    • 0033388858 scopus 로고    scopus 로고
    • In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment
    • Kuo, M. H., and C. D. Allis. 1999. In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment. Methods 19:425-433.
    • (1999) Methods , vol.19 , pp. 425-433
    • Kuo, M.H.1    Allis, C.D.2
  • 19
    • 0030862060 scopus 로고    scopus 로고
    • Two new S-phase-specific genes from Saccharomyces cerevisiae
    • Le, S., C. Davis, J. B. Konopka, and R. Sternglanz. 1997. Two new S-phase-specific genes from Saccharomyces cerevisiae. Yeast 13:1029-1042.
    • (1997) Yeast , vol.13 , pp. 1029-1042
    • Le, S.1    Davis, C.2    Konopka, J.B.3    Sternglanz, R.4
  • 20
    • 0029878216 scopus 로고    scopus 로고
    • Yeast histone H3 and H4 amino termini are important for nucleosome assembly in vivo and in vitro: Redundant and position-independent functions in assembly but not in gene regulation
    • Ling, X., T. A. Harkness, M. C. Schultz, G. Fisher-Adams, and M. Grunstein. 1996. Yeast histone H3 and H4 amino termini are important for nucleosome assembly in vivo and in vitro: redundant and position-independent functions in assembly but not in gene regulation. Genes Dev. 10:686-699.
    • (1996) Genes Dev. , vol.10 , pp. 686-699
    • Ling, X.1    Harkness, T.A.2    Schultz, M.C.3    Fisher-Adams, G.4    Grunstein, M.5
  • 21
    • 33644870210 scopus 로고    scopus 로고
    • The yeast histone chaperone chromatin assembly factor I protects against double-strand DNA-damaging agents
    • Linger, J., and J. K. Tyler. 2005. The yeast histone chaperone chromatin assembly factor I protects against double-strand DNA-damaging agents. Genetics 171:1513-1522.
    • (2005) Genetics , vol.171 , pp. 1513-1522
    • Linger, J.1    Tyler, J.K.2
  • 22
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine, M. S., A. McKenzie III, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 23
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 a resolution
    • Luger, K., A. W. Mader, R. K. Richmond, D. F. Sargent, and T. J. Richmond. 1997. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 24
    • 0026697659 scopus 로고
    • Histone H3 N-terminal mutations allow hyperactivation of the yeast GAL1 gene in vivo
    • Mann, R. K., and M. Grunstein. 1992. Histone H3 N-terminal mutations allow hyperactivation of the yeast GAL1 gene in vivo. EMBO J. 11:3297-3306.
    • (1992) EMBO J. , vol.11 , pp. 3297-3306
    • Mann, R.K.1    Grunstein, M.2
  • 25
    • 0022482135 scopus 로고
    • Normal stoichiometry of histone dimer sets is necessary for high fidelity of mitotic chromosome transmission
    • Meeks-Wagner, D., and L. H. Hartwell. 1986. Normal stoichiometry of histone dimer sets is necessary for high fidelity of mitotic chromosome transmission. Cell 44:43-52.
    • (1986) Cell , vol.44 , pp. 43-52
    • Meeks-Wagner, D.1    Hartwell, L.H.2
  • 26
    • 0035313802 scopus 로고    scopus 로고
    • The ins and outs of nucleosome assembly
    • Mello, J. A., and G. Almouzni. 2001. The ins and outs of nucleosome assembly. Curr. Opin. Genet. Dev. 11:136-141.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 136-141
    • Mello, J.A.1    Almouzni, G.2
  • 27
    • 27144510368 scopus 로고    scopus 로고
    • Genome-scale profiling of histone H3.3 replacement patterns
    • Mito, Y., J. G. Henikoff, and S. Henikoff. 2005. Genome-scale profiling of histone H3.3 replacement patterns. Nat. Genet. 37:1090-1097.
    • (2005) Nat. Genet. , vol.37 , pp. 1090-1097
    • Mito, Y.1    Henikoff, J.G.2    Henikoff, S.3
  • 29
    • 1642312883 scopus 로고    scopus 로고
    • Silencing of chromatin assembly factor I in human cells leads to cell death and loss of chromatin assembly during DNA synthesis
    • Nabatiyan, A., and T. Krude. 2004. Silencing of chromatin assembly factor I in human cells leads to cell death and loss of chromatin assembly during DNA synthesis. Mol. Cell. Biol. 24:2853-2862.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 2853-2862
    • Nabatiyan, A.1    Krude, T.2
  • 30
    • 8644256711 scopus 로고    scopus 로고
    • Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1
    • Ramey, C. J., S. Howar, M. Adkins, J. Linger, J. Spicer, and J. K. Tyler. 2004. Activation of the DNA damage checkpoint in yeast lacking the histone chaperone anti-silencing function 1. Mol. Cell. Biol. 24:10313-10327.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 10313-10327
    • Ramey, C.J.1    Howar, S.2    Adkins, M.3    Linger, J.4    Spicer, J.5    Tyler, J.K.6
  • 31
    • 0038094502 scopus 로고    scopus 로고
    • Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter
    • Reinke, H., and W. Horz. 2003. Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol. Cell 11:1599-1607.
    • (2003) Mol. Cell , vol.11 , pp. 1599-1607
    • Reinke, H.1    Horz, W.2
  • 32
    • 0036124470 scopus 로고    scopus 로고
    • Targeted mutagenesis of the Hira gene results in gastrulation defects and patterning abnormalities of mesoendodermal derivatives prior to early embryonic lethality
    • Roberts, C., H. F. Sutherland, H. Farmer, W. Kimber, S. Halford, A. Carey, J. M. Brickman, A. Wynshaw-Boris, and P. J. Scambler. 2002. Targeted mutagenesis of the Hira gene results in gastrulation defects and patterning abnormalities of mesoendodermal derivatives prior to early embryonic lethality. Mol. Cell. Biol. 22:2318-2328.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 2318-2328
    • Roberts, C.1    Sutherland, H.F.2    Farmer, H.3    Kimber, W.4    Halford, S.5    Carey, A.6    Brickman, J.M.7    Wynshaw-Boris, A.8    Scambler, P.J.9
  • 33
    • 33744963245 scopus 로고    scopus 로고
    • Asf1 is required for viability and chromatin assembly during DNA replication in vertebrate cells
    • Sanematsu, F., Y. Takami, H. K. Barman, T. Fukagawa, T. Ono, K. Shibahara, and T. Nakayama. 2006. Asf1 is required for viability and chromatin assembly during DNA replication in vertebrate cells. J. Biol. Chem. 281:13817-13827.
    • (2006) J. Biol. Chem. , vol.281 , pp. 13817-13827
    • Sanematsu, F.1    Takami, Y.2    Barman, H.K.3    Fukagawa, T.4    Ono, T.5    Shibahara, K.6    Nakayama, T.7
  • 34
    • 8644287437 scopus 로고    scopus 로고
    • Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II
    • Schwabish, M. A., and K. Struhl. 2004. Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 24:10111-10117.
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 10111-10117
    • Schwabish, M.A.1    Struhl, K.2
  • 35
    • 33646141366 scopus 로고    scopus 로고
    • Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II
    • Schwabish, M. A., and K. Struhl. 2006. Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II. Mol. Cell 22:415-422.
    • (2006) Mol. Cell , vol.22 , pp. 415-422
    • Schwabish, M.A.1    Struhl, K.2
  • 36
    • 17044394787 scopus 로고    scopus 로고
    • Transcriptional activation triggers deposition and removal of the histone variant H3.3
    • Schwartz, B. E., and K. Ahmad. 2005. Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev. 19:804-814.
    • (2005) Genes Dev. , vol.19 , pp. 804-814
    • Schwartz, B.E.1    Ahmad, K.2
  • 37
    • 0027391029 scopus 로고
    • Characterization of HIR1 and HIR2, two genes required for regulation of histone gene transcription in Saccharomyces cerevisiae
    • Sherwood, P. W., S. V.-M. Tsang, and M. A. Osley. 1993. Characterization of HIR1 and HIR2, two genes required for regulation of histone gene transcription in Saccharomyces cerevisiae. Mol. Cell. Biol. 13:28-38.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 28-38
    • Sherwood, P.W.1    Tsang, S.V.-M.2    Osley, M.A.3
  • 38
    • 0029807521 scopus 로고    scopus 로고
    • Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcriptional silencing
    • Stone, E. M., and L. Pillus. 1996. Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcriptional silencing. J. Cell Biol. 135:571-583.
    • (1996) J. Cell Biol. , vol.135 , pp. 571-583
    • Stone, E.M.1    Pillus, L.2
  • 39
    • 0742304304 scopus 로고    scopus 로고
    • Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
    • Tagami, H., D. Ray-Gallet, G. Almouzni, and Y. Nakatani. 2004. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116:51-61.
    • (2004) Cell , vol.116 , pp. 51-61
    • Tagami, H.1    Ray-Gallet, D.2    Almouzni, G.3    Nakatani, Y.4
  • 40
    • 0024977417 scopus 로고
    • Elevated recombination rates in transcriptionally active DNA
    • Thomas, B. J., and R. Rothstein. 1989. Elevated recombination rates in transcriptionally active DNA. Cell 56:619-630.
    • (1989) Cell , vol.56 , pp. 619-630
    • Thomas, B.J.1    Rothstein, R.2
  • 41
    • 0036091117 scopus 로고    scopus 로고
    • Chromatin assembly
    • Tyler, J. K. 2002. Chromatin assembly. Eur. J. Biochem. 269:2268-2274.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 2268-2274
    • Tyler, J.K.1
  • 42
    • 0033518179 scopus 로고    scopus 로고
    • The RCAF complex mediates chromatin assembly during DNA replication and repair
    • Tyler, J. K., C. R. Adams, S. R. Chen, R. Kobayashi, R. T. Kamakaka, and J. T. Kadonaga. 1999. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature 402:555-560.
    • (1999) Nature , vol.402 , pp. 555-560
    • Tyler, J.K.1    Adams, C.R.2    Chen, S.R.3    Kobayashi, R.4    Kamakaka, R.T.5    Kadonaga, J.T.6
  • 43
    • 23744460663 scopus 로고    scopus 로고
    • Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias
    • Wirbelauer, C., O. Bell, and D. Schubeler. 2005. Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias. Genes Dev. 19:1761-1766.
    • (2005) Genes Dev. , vol.19 , pp. 1761-1766
    • Wirbelauer, C.1    Bell, O.2    Schubeler, D.3
  • 45
    • 26444545490 scopus 로고    scopus 로고
    • Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density
    • Zhao, J., J. Herrera-Diaz, and D. S. Gross. 2005. Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density. Mol. Cell. Biol. 25:8985-8999.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 8985-8999
    • Zhao, J.1    Herrera-Diaz, J.2    Gross, D.S.3


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