The nuclear Hat1p/Hat2p complex: A molecular link between type B histone acetyltransferases and chromatin assembly

Molecular Cell

Volumn 14, Issue 2, 2004, Pages 195-205

  Ai, Xi ^a   Parthun, Mark R ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE ACETYLTRANSFERASE;

ACETYLATION; ARTICLE; CHROMATIN STRUCTURE; DNA STRAND BREAKAGE; FUNGAL STRAIN; NONHUMAN; OPEN READING FRAME; PROTEIN ASSEMBLY; PROTEIN FUNCTION; PROTEIN ISOLATION; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; TELOMERE;

ACETYLTRANSFERASES; ALLELES; BLOTTING, WESTERN; CELL EXTRACTS; CELL NUCLEUS; CHROMATIN; CYTOPLASM; DNA DAMAGE; DNA REPAIR; DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; FLUORESCENT ANTIBODY TECHNIQUE, INDIRECT; GENE DELETION; GENE SILENCING; GENES, REPORTER; HISTONE ACETYLTRANSFERASES; HYPOXIA-INDUCIBLE FACTOR 1; MODELS, MOLECULAR; MOLECULAR CHAPERONES; MOLECULAR WEIGHT; NUCLEAR PROTEINS; OPEN READING FRAMES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SUBCELLULAR FRACTIONS; SUBSTRATE SPECIFICITY; TELOMERE; TRANSCRIPTION FACTORS;

EID: 1942502859     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(04)00184-4     Document Type: Article

References (52)

1. Adams A., Gottschling D.E., Kaiser C.A., Stearns T. Methods in Yeast Genetics. 1997;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
2. Annunziato A.T., Seale R.L. Histone deacetylation is required for the maturation of newly replicated chromatin. J. Biol. Chem. 258:1983;12675-12684.
3. Annunziato A.T., Hansen J.C. Role of histone acetylation in the assembly and modulation of chromatin structures. Gene Expr. 9:2000;37-61.
4. Annunziato A.T., Schindler R.K., Thomas C.A. Jr., Seale R.L. Dual nature of newly replicated chromatin. Evidence for nucleosomal and non-nucleosomal DNA at the site of native replication forks. J. Biol. Chem. 256:1981;11880-11886.
5. Brownell J.E., Allis C.D. Special HATs for special occasions. linking histone acetylation to chromatin assembly and gene activation Curr. Opin. Genet. Dev. 6:1996;176-184.
6. Chang L., Loranger S.S., Mizzen C., Ernst S.G., Allis C.D., Annunziato A.T. Histones in transit. cytosolic histone complexes and diacetylation of H4 during nucleosome assembly in human cells Biochemistry. 36:1997;469-480.
7. Chicoine L.G., Schulman I.G., Richman R., Cook R.G., Allis C.D. Nonrandom utilization of acetylation sites in histones isolated from Tetrahymena. Evidence for functionally distinct H4 acetylation sites. J. Biol. Chem. 261:1986;1071-1076.
8. Chuang R.Y., Weaver P.L., Liu Z., Chang T.H. Requirement of the DEAD-Box protein ded1p for messenger RNA translation. Science. 275:1997;1468-1471.
9. Dilworth S.M., Black S.J., Laskey R.A. Two complexes that contain histones are required for nucleosome assembly in vitro. role of nucleoplasmin and N1 in Xenopus egg extracts Cell. 51:1987;1009-1018.
10. Eberharter A., Lechner T., Goralik-Schramel M., Loidl P. Purification and characterization of the cytoplasmic histone acetyltransferase B of maize embryos. FEBS Lett. 386:1996;75-81.
11. Gottschling D.E., Aparicio O.M., Billington B.L., Zakian V.A. Position effect at S. cerevisiae telomeres. reversible repression of Pol II transcription Cell. 63:1990;751-762.
12. Herskowitz I., Jensen R.E. Putting the HO gene to work. practical uses for mating-type switching Methods Enzymol. 194:1991;132-146.
13. Imhof A., Wolffe A.P. Purification and properties of the xenopus hat1 acetyltransferase. association with the 14-3-3 proteins in the oocyte nucleus Biochemistry. 38:1999;13085-13093.
14. Jackson V., Shires A., Tanphaichitr N., Chalkley R. Modifications to histones immediately after synthesis. J. Mol. Biol. 104:1976;471-483.
15. Kelly T.J., Qin S., Gottschling D.E., Parthun M.R. Type B histone acetyltransferase Hat1p participates in telomeric silencing. Mol. Cell. Biol. 20:2000;7051-7058.
16. Kleff S., Andrulis E.D., Anderson C.W., Sternglanz R. Identification of a gene encoding a yeast histone H4 acetyltransferase. J. Biol. Chem. 270:1995;24674-24677.
17. Kleinschmidt J.A., Franke W.W. Soluble acidic complexes containing histones H3 and H4 in nuclei of Xenopus laevis oocytes. Cell. 29:1982;799-809.
18. Kleinschmidt J.A., Fortkamp E., Krohne G., Zentgraf H., Franke W.W. Co-existence of two different types of soluble histone complexes in nuclei of Xenopus laevis oocytes. J. Biol. Chem. 260:1985;1166-1176.
19. Kleinschmidt J.A., Dingwall C., Maier G., Franke W.W. Molecular characterization of a karyophilic, histone-binding protein. cDNA cloning, amino acid sequence and expression of nuclear protein N1/N2 of Xenopus laevis EMBO J. 5:1986;3547-3552.
20. Longtine M.S., McKenzie A. III, Demarini D.J., Shah N.G., Wach A., Brachat A., Philippsen P., Pringle J.R. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast. 14:1998;953-961.
21. Louie A.J., Candido E.P., Dixon G.H. Enzymatic modifications and their possible roles in regulating the binding of basic proteins to DNA and in controlling chromosomal structure. Cold Spring Harb. Symp. Quant. Biol. 38:1974;803-819.
22. Lusser A., Brosch G., Lopez-Rodas G., Loidl P. Histone acetyltransferases during the cell cycle and differentiation of Physarum polycephalum. Eur. J. Cell Biol. 74:1997;102-110.
23. Lusser A., Eberharter A., Loidl A., Goralik-Schramel M., Horngacher M., Haas H., Loidl P. Analysis of the histone acetyltransferase B complex of maize embryos. Nucleic Acids Res. 27:1999;4427-4435.
24. Ma X.J., Wu J., Altheim B.A., Schultz M.C., Grunstein M. Deposition-related sites K5/K12 in histone H4 are not required for nucleosome deposition in yeast. Proc. Natl. Acad. Sci. USA. 95:1998;6693-6698.
25. Megee P.C., Morgan B.A., Mittman B.A., Smith M.M. Genetic analysis of histone H4. essential role of lysines subject to reversible acetylation Science. 247:1990;841-845.
26. Mello J.A., Sillje H.H., Roche D.M., Kirschner D.B., Nigg E.A., Almouzni G. Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway. EMBO Rep. 3:2002;329-334.
27. Mingarro I., Sendra R., Salvador M.L., Franco L. Site specificity of pea histone acetyltransferase B in vitro. J. Biol. Chem. 268:1993;13248-13252.
28. Mosammaparast N., Guo Y., Shabanowitz J., Hunt D.F., Pemberton L.F. Pathways mediating the nuclear import of histones H3 and H4 in yeast. J. Biol. Chem. 277:2002;862-868.
29. Munakata T., Adachi N., Yokoyama N., Kuzuhara T., Horikoshi M. A human homologue of yeast anti-silencing factor has histone chaperone activity. Genes Cells. 5:2000;221-233.
30. O'Rand M.G., Richardson R.T., Zimmerman L.J., Widgren E.E. Sequence and localization of human NASP. conservation of a Xenopus histone-binding protein Dev. Biol. 154:1992;37-44.
31. Parthun M.R., Widom J., Gottschling D.E. The major cytoplasmic histone acetyltransferase in yeast. links to chromatin replication and histone metabolism Cell. 87:1996;85-94.
32. Philpott A., Krude T., Laskey R.A. Nuclear chaperones. Semin. Cell Dev. Biol. 11:2000;7-14.
33. Ponticelli A.S., Struhl K. Analysis of Saccharomyces cerevisiae his3 transcription in vitro. biochemical support for multiple mechanisms of transcription Mol. Cell. Biol. 10:1990;2832-2839.
34. Puig O., Caspary F., Rigaut G., Rutz B., Bouveret E., Bragado-Nilsson E., Wilm M., Seraphin B. The tandem affinity purification (TAP) method. a general procedure of protein complex purification Methods. 24:2001;218-229.
35. Qian Y.W., Lee E.Y. Dual retinoblastoma-binding proteins with properties related to a negative regulator of ras in yeast. J. Biol. Chem. 270:1995;25507-25513.
36. Qian Y.W., Wang Y.C., Hollingsworth R.E. Jr., Jones D., Ling N., Lee E.Y. A retinoblastoma-binding protein related to a negative regulator of Ras in yeast. Nature. 364:1993;648-652.
37. Qin S., Parthun M.R. Histone H3 and the histone acetyltransferase Hat1p contribute to DNA double-strand break repair. Mol. Cell. Biol. 22:2002;8353-8365.
38. Richardson R.T., Batova I.N., Widgren E.E., Zheng L.X., Whitfield M., Marzluff W.F., O'Rand M.G. Characterization of the histone H1-binding protein, NASP, as a cell cycle-regulated somatic protein. J. Biol. Chem. 275:2000;30378-30386.
39. Richman R., Chicoine L.G., Collini M.P., Cook R.G., Allis C.D. Micronuclei and the cytoplasm of growing Tetrahymena contain a histone acetylase activity which is highly specific for free histone H4. J. Cell Biol. 106:1988;1017-1026.
40. Ruiz-Carillo A., Wangh L.J., Allfry V. Processing of newly synthesized histone molecules. Science. 190:1975;117-128.
41. Ruiz-Garcia A.B., Sendra R., Galiana M., Pamblanco M., Perez-Ortin J.E., Tordera V. HAT1 and HAT2 proteins are components of a yeast nuclear histone acetyltransferase enzyme specific for free histone H4. J. Biol. Chem. 273:1998;12599-12605.
42. Schultz M.C., Choe S.Y., Reeder R.H. Specific initiation by RNA polymerase I in a whole-cell extract from yeast. Proc. Natl. Acad. Sci. USA. 88:1991;1004-1008.
43. Servant F., Bru C., Carrère S., Courcelle E., Gouzy J., Peyruc D., Kahn D. ProDom. automated clustering of homologous domains Brief. Bioinform. 3:2002;246-251.
44. Sharp J.A., Fouts E.T., Krawitz D.C., Kaufman P.D. Yeast histone deposition protein Asf1p requires Hir proteins and PCNA for heterochromatic silencing. Curr. Biol. 11:2001;463-473.
45. Sobel R.E., Cook R.G., Perry C.A., Annunziato A.T., Allis C.D. Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc. Natl. Acad. Sci. USA. 92:1995;1237-1241.
46. Tagami H., Ray-Gallet D., Almouzni G., Nakatani Y. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell. 116:2004;51-61.
47. Tyler J.K., Adams C.R., Chen S.R., Kobayashi R., Kamakaka R.T., Kadonaga J.T. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature. 402:1999;555-560.
48. Verreault A., Kaufman P.D., Kobayashi R., Stillman B. Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase. Curr. Biol. 8:1998;96-108.
49. Welch J.E., O'Rand M.G. Characterization of a sperm-specific nuclear autoantigenic protein. II. Expression and localization in the testis. Biol. Reprod. 43:1990;569-578.
50. Welch J.E., Zimmerman L.J., Joseph D.R., O'Rand M.G. Characterization of a sperm-specific nuclear autoantigenic protein. I. Complete sequence and homology with the Xenopus protein, N1/N2. Biol. Reprod. 43:1990;559-568.
51. Wiegand R.C., Brutlag D.L. Histone acetylase from Drosophila melanogaster specific for H4. J. Biol. Chem. 256:1981;4578-4583.
52. Worcel A., Han S., Wong M.L. Assembly of newly replicated chromatin. Cell. 15:1978;969-977.