메뉴 건너뛰기




Volumn 23, Issue 10, 2006, Pages 1902-1911

Natural selection on the influenza virus genome

Author keywords

Drug; Genome; Influenza virus; Negative selection; Positive selection; Vaccine

Indexed keywords

AMINO ACID; EPITOPE; HLA ANTIGEN; NUCLEOTIDE;

EID: 33748789595     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl050     Document Type: Article
Times cited : (103)

References (81)
  • 1
    • 0027994408 scopus 로고
    • T cell epitope analysis with peptides simultaneously synthesized on cellulose membranes: Fine mapping of two DQ dependent epitopes
    • Adler S, Frank R, Lanzavecchia A, Weiss S. 1994. T cell epitope analysis with peptides simultaneously synthesized on cellulose membranes: fine mapping of two DQ dependent epitopes. FEBS Lett 352:167-70.
    • (1994) FEBS Lett , vol.352 , pp. 167-170
    • Adler, S.1    Frank, R.2    Lanzavecchia, A.3    Weiss, S.4
  • 2
    • 0022257421 scopus 로고
    • Location of antigenic sites on the three-dimensional structure of the influenza N2 virus neuraminidase
    • Air GM, Els MC, Brown LE, Laver WG, Webster RG. 1985. Location of antigenic sites on the three-dimensional structure of the influenza N2 virus neuraminidase. Virology 145:237-48.
    • (1985) Virology , vol.145 , pp. 237-248
    • Air, G.M.1    Els, M.C.2    Brown, L.E.3    Laver, W.G.4    Webster, R.G.5
  • 5
    • 28744452463 scopus 로고    scopus 로고
    • Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test
    • Berlin S, Smith NGC. 2005. Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test. BMC Evol Biol 5:65.
    • (2005) BMC Evol Biol , vol.5 , pp. 65
    • Berlin, S.1    Smith, N.G.C.2
  • 6
    • 0036168233 scopus 로고    scopus 로고
    • Sequence variation in a newly identified HLA-B35-restricted epitope in the influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes
    • Boon ACM, de Mutsert G, Graus YMF, Fouchier RAM, Sintnicolaas K, Osterhaus ADME, Rimmelzwaan GF. 2002. Sequence variation in a newly identified HLA-B35-restricted epitope in the influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes. J Virol 76:2567-72.
    • (2002) J Virol , vol.76 , pp. 2567-2572
    • Boon, A.C.M.1    De Mutsert, G.2    Graus, Y.M.F.3    Fouchier, R.A.M.4    Sintnicolaas, K.5    Osterhaus, A.D.M.E.6    Rimmelzwaan, G.F.7
  • 8
    • 0032736987 scopus 로고    scopus 로고
    • Positive selection on the H3 hemagglutinin gene of human influenza virus A
    • Bush RM, Fitch WM, Bender CA, Cox NJ. 1999. Positive selection on the H3 hemagglutinin gene of human influenza virus A. Mol Biol Evol 16:1457-65.
    • (1999) Mol Biol Evol , vol.16 , pp. 1457-1465
    • Bush, R.M.1    Fitch, W.M.2    Bender, C.A.3    Cox, N.J.4
  • 9
    • 0034691053 scopus 로고    scopus 로고
    • Effects of passage history and sampling bias on phylogenetic reconstruction of human influenza A evolution
    • Bush RM, Smith CB, Cox NJ, Fitch WM. 2000. Effects of passage history and sampling bias on phylogenetic reconstruction of human influenza A evolution. Proc Natl Acad Sci USA 97:6974-80.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6974-6980
    • Bush, R.M.1    Smith, C.B.2    Cox, N.J.3    Fitch, W.M.4
  • 10
    • 33645534281 scopus 로고    scopus 로고
    • H5N1 influenza virus evolution: A comparison of different epidemics in birds and humans (1997-2004)
    • Campitelli L, Ciccozzi M, Salemi M, Taglia F, Boros S, Donatelli I, Rezza G. 2006. H5N1 influenza virus evolution: a comparison of different epidemics in birds and humans (1997-2004). J Gen Virol 87:955-60.
    • (2006) J Gen Virol , vol.87 , pp. 955-960
    • Campitelli, L.1    Ciccozzi, M.2    Salemi, M.3    Taglia, F.4    Boros, S.5    Donatelli, I.6    Rezza, G.7
  • 11
    • 0030610757 scopus 로고    scopus 로고
    • Allele-specific variation in the degeneracy of major histocompatibility complex (MHC) restriction
    • Carmichael P, Copier J, So A, Lechler R. 1997. Allele-specific variation in the degeneracy of major histocompatibility complex (MHC) restriction. Hum Immunol 54:21-9.
    • (1997) Hum Immunol , vol.54 , pp. 21-29
    • Carmichael, P.1    Copier, J.2    So, A.3    Lechler, R.4
  • 12
    • 0035658084 scopus 로고    scopus 로고
    • A novel influenza A virus mitochondrial protein that induces cell death
    • Chen W, Calvo PA, Malide D, et al. (13 co-authors). 2001. A novel influenza A virus mitochondrial protein that induces cell death. Nat Med 7:1306-12.
    • (2001) Nat Med , vol.7 , pp. 1306-1312
    • Chen, W.1    Calvo, P.A.2    Malide, D.3
  • 13
    • 0442323299 scopus 로고    scopus 로고
    • Influenza virus: Immunity and vaccination strategies. Comparison of the immune response to inactivated and live, attenuated influenza vaccines
    • Cox RJ, Brokstad KA, Ogra P. 2004. Influenza virus: immunity and vaccination strategies. Comparison of the immune response to inactivated and live, attenuated influenza vaccines. Scand J Immunol 59:1-15.
    • (2004) Scand J Immunol , vol.59 , pp. 1-15
    • Cox, R.J.1    Brokstad, K.A.2    Ogra, P.3
  • 14
    • 29244462802 scopus 로고    scopus 로고
    • Identification of protective and non-protective T cell epitopes in influenza
    • Crowe SR, Miller SC, Woodland DL. 2006. Identification of protective and non-protective T cell epitopes in influenza. Vaccine 24:452-6.
    • (2006) Vaccine , vol.24 , pp. 452-456
    • Crowe, S.R.1    Miller, S.C.2    Woodland, D.L.3
  • 16
    • 0029073532 scopus 로고
    • Identification of the peptide binding motif for HLA-B44, one of the most common HLA-B alleles in the Caucasian population
    • DiBrino M, Parker KC, Margulies DH, Shiloach J, Turner RV, Biddison WE, Coligan JE. 1995. Identification of the peptide binding motif for HLA-B44, one of the most common HLA-B alleles in the Caucasian population. Biochemistry 34:10130-8.
    • (1995) Biochemistry , vol.34 , pp. 10130-10138
    • DiBrino, M.1    Parker, K.C.2    Margulies, D.H.3    Shiloach, J.4    Turner, R.V.5    Biddison, W.E.6    Coligan, J.E.7
  • 17
    • 0027370597 scopus 로고
    • HLA-A1 and HLA-A3 T cell epitopes derived from influenza virus proteins predicted from peptide binding motifs
    • DiBrino M, Tsuchida T, Turner RV, Parker KC, Coligan JE, Biddison WE. 1993. HLA-A1 and HLA-A3 T cell epitopes derived from influenza virus proteins predicted from peptide binding motifs. J Immunol 151:5930-5.
    • (1993) J Immunol , vol.151 , pp. 5930-5935
    • DiBrino, M.1    Tsuchida, T.2    Turner, R.V.3    Parker, K.C.4    Coligan, J.E.5    Biddison, W.E.6
  • 19
    • 0037468827 scopus 로고    scopus 로고
    • Ecological and immunological determinants of influenza evolution
    • Ferguson NM, Galvani AP, Bush RM. 2003. Ecological and immunological determinants of influenza evolution. Nature 422:428-33.
    • (2003) Nature , vol.422 , pp. 428-433
    • Ferguson, N.M.1    Galvani, A.P.2    Bush, R.M.3
  • 20
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch WM. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-16.
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 21
    • 0042573997 scopus 로고    scopus 로고
    • A codon-based model of host-specific selection in parasites, with an application to the influenza A virus
    • Forsberg R, Christiansen FB. 2003. A codon-based model of host-specific selection in parasites, with an application to the influenza A virus. Mol Biol Evol 20:1252-9.
    • (2003) Mol Biol Evol , vol.20 , pp. 1252-1259
    • Forsberg, R.1    Christiansen, F.B.2
  • 22
    • 27144474904 scopus 로고    scopus 로고
    • Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution
    • Ghedin E, Sengamalay NA, Shumway M, et al. (19 co-authors). 2005. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature 437:1162-6.
    • (2005) Nature , vol.437 , pp. 1162-1166
    • Ghedin, E.1    Sengamalay, N.A.2    Shumway, M.3
  • 23
    • 0034087707 scopus 로고    scopus 로고
    • Human memory CTL response specific for influenza A virus is broad and multispecific
    • Gianfrani C, Oseroff C, Sidney J, Chesnut RW, Sette A. 2000. Human memory CTL response specific for influenza A virus is broad and multispecific. Hum Immunol 61:438-52.
    • (2000) Hum Immunol , vol.61 , pp. 438-452
    • Gianfrani, C.1    Oseroff, C.2    Sidney, J.3    Chesnut, R.W.4    Sette, A.5
  • 24
    • 0141702339 scopus 로고    scopus 로고
    • Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A
    • Gog JR, Rimmelzwaan GF, Osterhaus AD, Grenfell BT. 2003. Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A. Proc Natl Acad Sci USA 100:11143-7.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 11143-11147
    • Gog, J.R.1    Rimmelzwaan, G.F.2    Osterhaus, A.D.3    Grenfell, B.T.4
  • 25
    • 0024246812 scopus 로고
    • Recognition of influenza A matrix protein by HLA-A2-restricted cytotoxic T lymphocytes
    • Gotch F, McMichael A, Rothbard J. 1988. Recognition of influenza A matrix protein by HLA-A2-restricted cytotoxic T lymphocytes. J Exp Med 168:2045-57.
    • (1988) J Exp Med , vol.168 , pp. 2045-2057
    • Gotch, F.1    McMichael, A.2    Rothbard, J.3
  • 26
    • 0034603350 scopus 로고    scopus 로고
    • Influenza virus neuraminidase inhibitors
    • Gubareva LV, Kaiser L, Hayden FG. 2000. Influenza virus neuraminidase inhibitors. Lancet 355:827-35.
    • (2000) Lancet , vol.355 , pp. 827-835
    • Gubareva, L.V.1    Kaiser, L.2    Hayden, F.G.3
  • 27
    • 0026618817 scopus 로고
    • Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle
    • Guo HC, Jardetzky TS, Garrett TP, Lane WS, Strominger JL, Wiley DC. 1992. Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle. Nature 360:364-6.
    • (1992) Nature , vol.360 , pp. 364-366
    • Guo, H.C.1    Jardetzky, T.S.2    Garrett, T.P.3    Lane, W.S.4    Strominger, J.L.5    Wiley, D.C.6
  • 28
    • 0029134072 scopus 로고
    • Egg fluids and cells of the chorioallantoic membrane of embryonated chicken eggs can select different variants of influenza A (H3N2) viruses
    • Hardy CT, Young SA, Webster RG, Naeve CW, Owens RJ. 1995. Egg fluids and cells of the chorioallantoic membrane of embryonated chicken eggs can select different variants of influenza A (H3N2) viruses. Virology 211:302-6.
    • (1995) Virology , vol.211 , pp. 302-306
    • Hardy, C.T.1    Young, S.A.2    Webster, R.G.3    Naeve, C.W.4    Owens, R.J.5
  • 29
    • 0022157043 scopus 로고
    • The molecular basis of the specific anti-influenza action of amantadine
    • Hay AJ, Wolstenholme AJ, Skehel JJ, Smith MH. 1985. The molecular basis of the specific anti-influenza action of amantadine. EMBO J 4:3021-4.
    • (1985) EMBO J , vol.4 , pp. 3021-3024
    • Hay, A.J.1    Wolstenholme, A.J.2    Skehel, J.J.3    Smith, M.H.4
  • 31
    • 24944468625 scopus 로고    scopus 로고
    • Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
    • Holmes EC, Ghedin E, Miller N, et al. (11 co-authors). 2005. Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. PLoS Biol 3:e300.
    • (2005) PLoS Biol , vol.3
    • Holmes, E.C.1    Ghedin, E.2    Miller, N.3
  • 32
    • 0025305927 scopus 로고
    • Structural homologies between two HLA B27-restricted peptides suggest residues important for interaction with HLA B27
    • Huet S, Nixon DF, Rothbard JB, Townsend A, Ellis SA, McMichael AJ. 1990. Structural homologies between two HLA B27-restricted peptides suggest residues important for interaction with HLA B27. Int Immunol 2:311-6.
    • (1990) Int Immunol , vol.2 , pp. 311-316
    • Huet, S.1    Nixon, D.F.2    Rothbard, J.B.3    Townsend, A.4    Ellis, S.A.5    McMichael, A.J.6
  • 33
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals over-dominant selection
    • Hughes AL, Nei M. 1988. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals over-dominant selection. Nature 335:167-70.
    • (1988) Nature , vol.335 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 34
    • 0033564710 scopus 로고    scopus 로고
    • Human CD8+ and CD4+ T lymphocyte memory to influenza A viruses of swine and avian species
    • Jameson J, Cruz J, Terajima M, Ennis FA. 1999. Human CD8+ and CD4+ T lymphocyte memory to influenza A viruses of swine and avian species. J Immunol 162:7578-83.
    • (1999) J Immunol , vol.162 , pp. 7578-7583
    • Jameson, J.1    Cruz, J.2    Terajima, M.3    Ennis, F.A.4
  • 35
    • 18044395497 scopus 로고    scopus 로고
    • Two residues in the hemagglutinin of A/Fujian/411/02-like influenza viruses are responsible for antigenic drift from A/Panama/2007/99
    • Jin H, Zhou H, Liu H, Chan W, Adhikary L, Mahmood K, Lee MS, Kemble G. 2005. Two residues in the hemagglutinin of A/Fujian/411/02-like influenza viruses are responsible for antigenic drift from A/Panama/2007/99. Virology 336:113-9.
    • (2005) Virology , vol.336 , pp. 113-119
    • Jin, H.1    Zhou, H.2    Liu, H.3    Chan, W.4    Adhikary, L.5    Mahmood, K.6    Lee, M.S.7    Kemble, G.8
  • 36
    • 0028314427 scopus 로고
    • Degeneracy of T cell receptor recognition of an influenza virus hemagglutinin epitope restricted by HLA-DQ and -DR class II molecules
    • Jones CM, Lake RA, Lamb JR, Faith A. 1994. Degeneracy of T cell receptor recognition of an influenza virus hemagglutinin epitope restricted by HLA-DQ and -DR class II molecules. Eur J Immunol 24:1137-42.
    • (1994) Eur J Immunol , vol.24 , pp. 1137-1142
    • Jones, C.M.1    Lake, R.A.2    Lamb, J.R.3    Faith, A.4
  • 37
    • 0036678093 scopus 로고    scopus 로고
    • The total influenza vaccine failure of 1947 revisited: Major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemic
    • Kilbourne ED, Smith C, Brett I, Pokorny BA, Johansson B, Cox N. 2002. The total influenza vaccine failure of 1947 revisited: major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemic. Proc Natl Acad Sci USA 99:10748-52.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 10748-10752
    • Kilbourne, E.D.1    Smith, C.2    Brett, I.3    Pokorny, B.A.4    Johansson, B.5    Cox, N.6
  • 38
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-20.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 41
    • 34447622953 scopus 로고    scopus 로고
    • The value of a database in surveillance and vaccine selection
    • Osterhaus ADME, Cox N, Hampson AW, editors. Amsterdam: Elsevier Science
    • Macken C, Lu H, Goodman J, Boykin L. 2001. The value of a database in surveillance and vaccine selection. In: Osterhaus ADME, Cox N, Hampson AW, editors. Options for the control of influenza IV. Amsterdam: Elsevier Science. p 103-6.
    • (2001) Options for the Control of Influenza IV , pp. 103-106
    • Macken, C.1    Lu, H.2    Goodman, J.3    Boykin, L.4
  • 43
    • 0031824006 scopus 로고    scopus 로고
    • + cytotoxic T cells to virus clearance or pathologic manifestations of influenza virus infection in a T cell receptor transgenic mouse model
    • + cytotoxic T cells to virus clearance or pathologic manifestations of influenza virus infection in a T cell receptor transgenic mouse model. J Exp Med 188:223-32.
    • (1998) J Exp Med , vol.188 , pp. 223-232
    • Moskophidis, D.1    Kioussis, D.2
  • 44
    • 0014864334 scopus 로고
    • Studies on inactivated influenza vaccines. II. Effect of increasing dosage on antibody response and adverse reactions in man
    • Mostow SR, Schoenbaum SC, Dowdle WR, Coleman MT, Kaye HS, Hierholzer JC. 1970. Studies on inactivated influenza vaccines. II. Effect of increasing dosage on antibody response and adverse reactions in man. Am J Epidemiol 92:248-56.
    • (1970) Am J Epidemiol , vol.92 , pp. 248-256
    • Mostow, S.R.1    Schoenbaum, S.C.2    Dowdle, W.R.3    Coleman, M.T.4    Kaye, H.S.5    Hierholzer, J.C.6
  • 45
    • 0002322145 scopus 로고
    • Genetic polymorphism and the role of mutation in evolution
    • Nei M, Koehn RK, editors. Sunderland, MA: Sinauer
    • Nei M. 1983. Genetic polymorphism and the role of mutation in evolution. In: Nei M, Koehn RK, editors. Evolution of genes and proteins. Sunderland, MA: Sinauer. p 165-90.
    • (1983) Evolution of Genes and Proteins , pp. 165-190
    • Nei, M.1
  • 47
    • 0032874490 scopus 로고    scopus 로고
    • A universal influenza A vaccine based on the extracellular domain of the M2 protein
    • Neirynck S, Deroo T, Saelens X, Vanlandschoot P, Jou WM, Fiers W. 1999. A universal influenza A vaccine based on the extracellular domain of the M2 protein. Nat Med 5:1157-63.
    • (1999) Nat Med , vol.5 , pp. 1157-1163
    • Neirynck, S.1    Deroo, T.2    Saelens, X.3    Vanlandschoot, P.4    Jou, W.M.5    Fiers, W.6
  • 48
    • 31444441789 scopus 로고    scopus 로고
    • Architecture of ribonucleoprotein complexes in influenza A virus particles
    • Noda T, Sagara H, Yen A, Takada A, Kida H, Cheng RH, Kawaoka Y. 2006. Architecture of ribonucleoprotein complexes in influenza A virus particles. Nature 439:490-2.
    • (2006) Nature , vol.439 , pp. 490-492
    • Noda, T.1    Sagara, H.2    Yen, A.3    Takada, A.4    Kida, H.5    Cheng, R.H.6    Kawaoka, Y.7
  • 49
    • 33645067624 scopus 로고    scopus 로고
    • Large-scale sequence analysis of avian influenza isolates
    • Obenauer JC, Denson J, Mehta PK, et al. (17 co-authors). 2006. Large-scale sequence analysis of avian influenza isolates. Science 311:1576-80.
    • (2006) Science , vol.311 , pp. 1576-1580
    • Obenauer, J.C.1    Denson, J.2    Mehta, P.K.3
  • 51
    • 0037197919 scopus 로고    scopus 로고
    • Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus
    • Plotkin JB, Dushoff J, Levin SA. 2002. Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus. Proc Natl Acad Sci USA 99:6263-8.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6263-6268
    • Plotkin, J.B.1    Dushoff, J.2    Levin, S.A.3
  • 52
    • 0027402746 scopus 로고
    • Effect of age on cytotoxic T lymphocyte memory as well as serum and local antibody responses elicited by inactivated influenza virus vaccine
    • Powers DC, Belshe RB. 1993. Effect of age on cytotoxic T lymphocyte memory as well as serum and local antibody responses elicited by inactivated influenza virus vaccine. J Infect Dis 167:584-92.
    • (1993) J Infect Dis , vol.167 , pp. 584-592
    • Powers, D.C.1    Belshe, R.B.2
  • 53
    • 0038281510 scopus 로고    scopus 로고
    • HLA-B*0702 transgenic, H-2KbDb double-knockout mice: Phenotypical and functional characterization in the response to influenza
    • Rohrlich PS, Cardinaud S, Firat H, Lamari M, Briand P, Escrious N, Lemonier FA. 2002. HLA-B*0702 transgenic, H-2KbDb double-knockout mice: phenotypical and functional characterization in the response to influenza. Int Immunol 15: 765-72.
    • (2002) Int Immunol , vol.15 , pp. 765-772
    • Rohrlich, P.S.1    Cardinaud, S.2    Firat, H.3    Lamari, M.4    Briand, P.5    Escrious, N.6    Lemonier, F.A.7
  • 55
    • 84959816047 scopus 로고
    • A theoretical study of the underestimation of branch lengths by the maximum parsimony principle
    • Saitou N. 1989. A theoretical study of the underestimation of branch lengths by the maximum parsimony principle. Syst Zool 38:1-6.
    • (1989) Syst Zool , vol.38 , pp. 1-6
    • Saitou, N.1
  • 56
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-25.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 58
    • 49749210869 scopus 로고
    • A virus obtained from influenza patients
    • Smith W, Andrewes CH, Laidlaw PP. 1933. A virus obtained from influenza patients. Lancet 225:66-8.
    • (1933) Lancet , vol.225 , pp. 66-68
    • Smith, W.1    Andrewes, C.H.2    Laidlaw, P.P.3
  • 60
    • 0027473829 scopus 로고
    • A sequence pattern for peptides presented to cytotoxic T lymphocytes by HLA B8 revealed by analysis of epitopes and eluted peptides
    • Sutton J, Rowland-Jones S, Rosenberg W, et al. (12 co-authors). 1993. A sequence pattern for peptides presented to cytotoxic T lymphocytes by HLA B8 revealed by analysis of epitopes and eluted peptides. Eur J Immunol 23:447-53.
    • (1993) Eur J Immunol , vol.23 , pp. 447-453
    • Sutton, J.1    Rowland-Jones, S.2    Rosenberg, W.3
  • 61
    • 1542395680 scopus 로고    scopus 로고
    • Negative selection on neutralization epitopes of poliovirus surface proteins: Implications for prediction of candidate epitopes for immunization
    • Suzuki Y. 2004a. Negative selection on neutralization epitopes of poliovirus surface proteins: implications for prediction of candidate epitopes for immunization. Gene 328:127-33.
    • (2004) Gene , vol.328 , pp. 127-133
    • Suzuki, Y.1
  • 62
    • 3042725369 scopus 로고    scopus 로고
    • New methods for detecting positive selection at single amino acid sites
    • Suzuki Y. 2004b. New methods for detecting positive selection at single amino acid sites. J Mol Evol 59:11-9.
    • (2004) J Mol Evol , vol.59 , pp. 11-19
    • Suzuki, Y.1
  • 63
    • 8444220853 scopus 로고    scopus 로고
    • Three-dimensional window analysis for detecting positive selection at structural regions of proteins
    • Suzuki Y. 2004c. Three-dimensional window analysis for detecting positive selection at structural regions of proteins. Mol Biol Evol 21:2352-9.
    • (2004) Mol Biol Evol , vol.21 , pp. 2352-2359
    • Suzuki, Y.1
  • 64
    • 0032849322 scopus 로고    scopus 로고
    • A method for detecting positive selection at single amino acid sites
    • Suzuki Y, Gojobori T. 1999. A method for detecting positive selection at single amino acid sites. Mol Biol Evol 16:1315-28.
    • (1999) Mol Biol Evol , vol.16 , pp. 1315-1328
    • Suzuki, Y.1    Gojobori, T.2
  • 65
    • 0035802435 scopus 로고    scopus 로고
    • Positively selected amino acid sites in the entire coding region of hepatitis C virus subtype 1b
    • Suzuki Y, Gojobori T. 2001. Positively selected amino acid sites in the entire coding region of hepatitis C virus subtype 1b. Gene 276:83-7.
    • (2001) Gene , vol.276 , pp. 83-87
    • Suzuki, Y.1    Gojobori, T.2
  • 66
    • 0034904729 scopus 로고    scopus 로고
    • ADAPTSITE: Detecting natural selection at single amino acid sites
    • Suzuki Y, Gojobori T, Nei M. 2001. ADAPTSITE: detecting natural selection at single amino acid sites. Bioinformatics 17:660-1.
    • (2001) Bioinformatics , vol.17 , pp. 660-661
    • Suzuki, Y.1    Gojobori, T.2    Nei, M.3
  • 67
    • 0036213345 scopus 로고    scopus 로고
    • Origin and evolution of influenza virus hemagglutinin genes
    • Suzuki Y, Nei M. 2002. Origin and evolution of influenza virus hemagglutinin genes. Mol Biol Evol 19:501-9.
    • (2002) Mol Biol Evol , vol.19 , pp. 501-509
    • Suzuki, Y.1    Nei, M.2
  • 68
    • 1942533483 scopus 로고    scopus 로고
    • False-positive selection identified by ML-based methods: Examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus
    • Suzuki Y, Nei M. 2004. False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Mol Biol Evol 21:914-21.
    • (2004) Mol Biol Evol , vol.21 , pp. 914-921
    • Suzuki, Y.1    Nei, M.2
  • 70
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-80.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 71
    • 0022483534 scopus 로고
    • The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides
    • Townsend AR, Rothbard J, Gotch FM, Bahadur G, Wraith D, McMichael AJ. 1986. The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides. Cell 44:959-68.
    • (1986) Cell , vol.44 , pp. 959-968
    • Townsend, A.R.1    Rothbard, J.2    Gotch, F.M.3    Bahadur, G.4    Wraith, D.5    McMichael, A.J.6
  • 74
    • 31344475098 scopus 로고    scopus 로고
    • An epidemiologically significant epitope of a 1998 human influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex
    • Venkatramani L, Bochkareva E, Lee JT, Gulati U, Laver WG, Bochkarev A, Air GM. 2006. An epidemiologically significant epitope of a 1998 human influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex. J Mol Biol 356:651-63.
    • (2006) J Mol Biol , vol.356 , pp. 651-663
    • Venkatramani, L.1    Bochkareva, E.2    Lee, J.T.3    Gulati, U.4    Laver, W.G.5    Bochkarev, A.6    Air, G.M.7
  • 75
    • 0023039149 scopus 로고
    • Vaccination as a strategy to reduce the emergence of amantadine- and rimantadine-resistant strains of A/Chick/Pennsylvania/83 (H5N2) influenza virus
    • Webster RG, Kawaoka Y, Bean WJ. 1986. Vaccination as a strategy to reduce the emergence of amantadine- and rimantadine-resistant strains of A/Chick/Pennsylvania/83 (H5N2) influenza virus. J Antimicrob Chemother 18:157-64.
    • (1986) J Antimicrob Chemother , vol.18 , pp. 157-164
    • Webster, R.G.1    Kawaoka, Y.2    Bean, W.J.3
  • 76
    • 0035163814 scopus 로고    scopus 로고
    • Cross-reactivity between hepatitis C virus and influenza A virus determinant specific cytotoxic T cells
    • Wedermeyer H, Mizukoshi E, Davis AR, Bennink JR, Rehermann B. 2001. Cross-reactivity between hepatitis C virus and influenza A virus determinant specific cytotoxic T cells. J Virol 75:11392-400.
    • (2001) J Virol , vol.75 , pp. 11392-11400
    • Wedermeyer, H.1    Mizukoshi, E.2    Davis, A.R.3    Bennink, J.R.4    Rehermann, B.5
  • 77
    • 0019432165 scopus 로고
    • Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation
    • Wiley DC, Wilson IA, Skehel JJ. 1981. Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation. Nature 289:373-8.
    • (1981) Nature , vol.289 , pp. 373-378
    • Wiley, D.C.1    Wilson, I.A.2    Skehel, J.J.3
  • 78
    • 0019119577 scopus 로고
    • A revision of the system of nomenclature for influenza viruses: A WHO memorandum
    • World Health Organization. 1980. A revision of the system of nomenclature for influenza viruses: a WHO memorandum. Bull WHO 58:585-91.
    • (1980) Bull WHO , vol.58 , pp. 585-591
  • 80
    • 0023820458 scopus 로고
    • Influenza A virus M2 protein: Monoclonal antibody restriction of virus growth and detection of M2 in virions
    • Zebedee SL, Lamb RA. 1988. Influenza A virus M2 protein: monoclonal antibody restriction of virus growth and detection of M2 in virions. J Virol 62:2762-72.
    • (1988) J Virol , vol.62 , pp. 2762-2772
    • Zebedee, S.L.1    Lamb, R.A.2
  • 81
    • 18744377200 scopus 로고    scopus 로고
    • Influenza type A virus escape mutants emerge in vivo in the presence of antibodies to the ectodomain of matrix protein 2
    • Zharikova D, Mozdzanowska K, Feng J, Zhang M, Gerhard W. 2005. Influenza type A virus escape mutants emerge in vivo in the presence of antibodies to the ectodomain of matrix protein 2. J Virol 79:6644-54.
    • (2005) J Virol , vol.79 , pp. 6644-6654
    • Zharikova, D.1    Mozdzanowska, K.2    Feng, J.3    Zhang, M.4    Gerhard, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.