-
1
-
-
0026317416
-
The minimum peptide epitope from the influenza virus matrix protein. Extra and intracellular loading of HLA-A2
-
Bednarek, M. A., S. Y. Sauma, M. C. Gammon, G. Porter, S. Tamhankar, A. R. Williamson, and H. J. Zweerink. 1991. The minimum peptide epitope from the influenza virus matrix protein. Extra and intracellular loading of HLA-A2. J. Immunol. 147:4047-4053.
-
(1991)
J. Immunol.
, vol.147
, pp. 4047-4053
-
-
Bednarek, M.A.1
Sauma, S.Y.2
Gammon, M.C.3
Porter, G.4
Tamhankar, S.5
Williamson, A.R.6
Zweerink, H.J.7
-
3
-
-
0036138764
-
The magnitude and specificity of influenza A virus-specific cytotoxic T-lymphocyte responses in humans is related to HLA-A and -B phenotype
-
Boon, A. C., G. de Mutsert, Y. M. Graus, R. A. Fouchier, K. Sintnicolaas, A. D. M. E. Osterhaus, and G. F. Rimmelzwaan. 2002. The magnitude and specificity of influenza A virus-specific cytotoxic T-lymphocyte responses in humans is related to HLA-A and -B phenotype. J. Virol. 76:582-590.
-
(2002)
J. Virol.
, vol.76
, pp. 582-590
-
-
Boon, A.C.1
De Mutsert, G.2
Graus, Y.M.3
Fouchier, R.A.4
Sintnicolaas, K.5
Osterhaus, A.D.M.E.6
Rimmelzwaan, G.F.7
-
4
-
-
0036168233
-
Sequence variation in a newly identified HLA-B35-restricted epitope in the influenza a virus nucleoprotein associated with escape from cytotoxic T lymphocytes
-
Boon, A. C. M., G. de Mutsert, Y. M. F. Graus, R. A. M. Fouchier, K. Sintnicolaas, A. D. M. E. Osterhaus, and G. F. Rimmelzwaan. 2002. Sequence variation in a newly identified HLA-B35-restricted epitope in the influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes. J. Virol. 76:2567-2572.
-
(2002)
J. Virol.
, vol.76
, pp. 2567-2572
-
-
Boon, A.C.M.1
De Mutsert, G.2
Graus, Y.M.F.3
Fouchier, R.A.M.4
Sintnicolaas, K.5
Osterhaus, A.D.M.E.6
Rimmelzwaan, G.F.7
-
5
-
-
0842300355
-
Recognition of homo- and heterosubtypic variants of influenza a viruses by human CD8+ T lymphocytes
-
Boon, A. C. M., G. de Mutsert, D. van Baarle, D. J. Smith, A. S. Lapedes, R. A. Fouchier, K. Sintnicolaas, A. D. Osterhaus, and G. F. Rimmelzwaan. 2004. Recognition of homo- and heterosubtypic variants of influenza A viruses by human CD8+ T lymphocytes. J. Immunol. 172:2453-2460.
-
(2004)
J. Immunol.
, vol.172
, pp. 2453-2460
-
-
Boon, A.C.M.1
De Mutsert, G.2
Van Baarle, D.3
Smith, D.J.4
Lapedes, A.S.5
Fouchier, R.A.6
Sintnicolaas, K.7
Osterhaus, A.D.8
Rimmelzwaan, G.F.9
-
6
-
-
0036037611
-
Influenza a virus specific T cell immunity in humans during aging
-
Boon, A. C. M., E. Fringuelli, Y. M. Graus, R. A. Fouchier, K. Sintnicolaas, A. M. Iorio, G. F. Rimmelzwaan, and A. D. Osterhaus. 2002. Influenza A virus specific T cell immunity in humans during aging. Virology 299:100-108.
-
(2002)
Virology
, vol.299
, pp. 100-108
-
-
Boon, A.C.M.1
Fringuelli, E.2
Graus, Y.M.3
Fouchier, R.A.4
Sintnicolaas, K.5
Iorio, A.M.6
Rimmelzwaan, G.F.7
Osterhaus, A.D.8
-
7
-
-
16944365445
-
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
-
Borrow, P., H. Lewicki, X. Wei, M. S. Horwitz, N. Peffer, H. Meyers, J. A. Nelson, J. E. Gairin, B. H. Hahn, M. B. Oldstone, and G. M. Shaw. 1997. Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat. Med. 3:205-211.
-
(1997)
Nat. Med.
, vol.3
, pp. 205-211
-
-
Borrow, P.1
Lewicki, H.2
Wei, X.3
Horwitz, M.S.4
Peffer, N.5
Meyers, H.6
Nelson, J.A.7
Gairin, J.E.8
Hahn, B.H.9
Oldstone, M.B.10
Shaw, G.M.11
-
8
-
-
11144244386
-
Influenza A viruses with mutations in the m1 helix six domain display a wide variety of morphological phenotypes
-
Burleigh, L. M., L. J. Calder, J. J. Skehel, and D. A. Steinhauer. 2005. Influenza A viruses with mutations in the m1 helix six domain display a wide variety of morphological phenotypes. J. Virol. 79:1262-1270.
-
(2005)
J. Virol.
, vol.79
, pp. 1262-1270
-
-
Burleigh, L.M.1
Calder, L.J.2
Skehel, J.J.3
Steinhauer, D.A.4
-
9
-
-
0030671121
-
Immunological significance of cytotoxic T lymphocyte epitope variants in patients chronically infected by the hepatitis C virus
-
Chang, K. M., B. Rehermann, J. G. McHutchison, C. Pasquinelli, S. Southwood, A. Sette, and F. V. Chisari. 1997. Immunological significance of cytotoxic T lymphocyte epitope variants in patients chronically infected by the hepatitis C virus. J. Clin. Investig. 100:2376-2385.
-
(1997)
J. Clin. Investig.
, vol.100
, pp. 2376-2385
-
-
Chang, K.M.1
Rehermann, B.2
McHutchison, J.G.3
Pasquinelli, C.4
Southwood, S.5
Sette, A.6
Chisari, F.V.7
-
10
-
-
0034644009
-
The immune system. Second of two parts
-
Delves, P. J., and I. M. Roitt. 2000. The immune system. Second of two parts. N. Engl. J. Med. 343:108-117.
-
(2000)
N. Engl. J. Med.
, vol.343
, pp. 108-117
-
-
Delves, P.J.1
Roitt, I.M.2
-
11
-
-
2442528187
-
Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments
-
de Wit, E., M. I. Spronken, T. M. Bestebroer, G. F. Rimmelzwaan, A. D. Osterhaus, and R. A. Fouchier. 2004. Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments. Virus Res. 103:155-161.
-
(2004)
Virus Res.
, vol.103
, pp. 155-161
-
-
De Wit, E.1
Spronken, M.I.2
Bestebroer, T.M.3
Rimmelzwaan, G.F.4
Osterhaus, A.D.5
Fouchier, R.A.6
-
12
-
-
0028558969
-
The HLA-B14 peptide binding site can accommodate peptides with different combinations of anchor residues
-
DiBrino, M., K. C. Parker, D. H. Margulies, J. Shiloach, R. V. Turner, W. E. Biddison, and J. E. Coligan. 1994. The HLA-B14 peptide binding site can accommodate peptides with different combinations of anchor residues. J. Biol. Chem. 269:32426-32434.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 32426-32434
-
-
Dibrino, M.1
Parker, K.C.2
Margulies, D.H.3
Shiloach, J.4
Turner, R.V.5
Biddison, W.E.6
Coligan, J.E.7
-
13
-
-
0029073532
-
Identification of the peptide binding motif for HLA-B44, one of the most common HLA-B alleles in the Caucasian population
-
DiBrino, M., K. C. Parker, D. H. Margulies, J. Shiloach, R. V. Turner, W. E. Biddison, and J. E. Coligan. 1995. Identification of the peptide binding motif for HLA-B44, one of the most common HLA-B alleles in the Caucasian population. Biochemistry 34:10130-10138.
-
(1995)
Biochemistry
, vol.34
, pp. 10130-10138
-
-
DiBrino, M.1
Parker, K.C.2
Margulies, D.H.3
Shiloach, J.4
Turner, R.V.5
Biddison, W.E.6
Coligan, J.E.7
-
14
-
-
0027370597
-
HLA-A1 and HLA-A3 T cell epitopes derived from influenza virus proteins predicted from peptide binding motifs
-
DiBrino, M., T. Tsuchida, R. V. Turner, K. C. Parker, J. E. Coligan, and W. E. Biddison. 1993. HLA-A1 and HLA-A3 T cell epitopes derived from influenza virus proteins predicted from peptide binding motifs. J. Immunol. 151:5930-5935.
-
(1993)
J. Immunol.
, vol.151
, pp. 5930-5935
-
-
Dibrino, M.1
Tsuchida, T.2
Turner, R.V.3
Parker, K.C.4
Coligan, J.E.5
Biddison, W.E.6
-
15
-
-
0030027584
-
An HLA-B35-restricted epitope modified at an anchor residue results in an antagonist peptide
-
Dong, T., D. Boyd, W. Rosenberg, N. Alp, M. Takiguchi, A. McMichael, and S. Rowland-Jones. 1996. An HLA-B35-restricted epitope modified at an anchor residue results in an antagonist peptide. Eur. J. Immunol. 26:335-339.
-
(1996)
Eur. J. Immunol.
, vol.26
, pp. 335-339
-
-
Dong, T.1
Boyd, D.2
Rosenberg, W.3
Alp, N.4
Takiguchi, M.5
McMichael, A.6
Rowland-Jones, S.7
-
16
-
-
0027222841
-
Peptide motifs of HLA-B35 and -B37 molecules
-
Falk, K., O. Rotzschke, B. Grahovac, D. Schendel, S. Stevanovic, G. Jung, and H. G. Rammensee. 1993. Peptide motifs of HLA-B35 and -B37 molecules. Immunogenetics 38:161-162.
-
(1993)
Immunogenetics
, vol.38
, pp. 161-162
-
-
Falk, K.1
Rotzschke, O.2
Grahovac, B.3
Schendel, D.4
Stevanovic, S.5
Jung, G.6
Rammensee, H.G.7
-
17
-
-
10744221493
-
Extraepitopic compensatory substitutions partially restore fitness to simian immunodeficiency virus variants that escape from an immunodominant cytotoxic-T-lymphocyte response
-
Friedrich, T. C., C. A. Frye, L. J. Yant, D. H. O'Connor, N. A. Kriewaldt, M. Benson, L. Vojnov, E. J. Dodds, C. Cullen, R. Rudersdorf, A. L. Hughes, N. Wilson, and D. I. Watkins. 2004. Extraepitopic compensatory substitutions partially restore fitness to simian immunodeficiency virus variants that escape from an immunodominant cytotoxic-T-lymphocyte response. J. Virol. 78:2581-2585.
-
(2004)
J. Virol.
, vol.78
, pp. 2581-2585
-
-
Friedrich, T.C.1
Frye, C.A.2
Yant, L.J.3
O'Connor, D.H.4
Kriewaldt, N.A.5
Benson, M.6
Vojnov, L.7
Dodds, E.J.8
Cullen, C.9
Rudersdorf, R.10
Hughes, A.L.11
Wilson, N.12
Watkins, D.I.13
-
18
-
-
0034087707
-
Human memory CTL response specific for influenza A virus is broad and multispecific
-
Gianfrani, C., C. Oseroff, J. Sidney, R. W. Chesnut, and A. Sette. 2000. Human memory CTL response specific for influenza A virus is broad and multispecific. Hum. Immunol. 61:438-452.
-
(2000)
Hum. Immunol.
, vol.61
, pp. 438-452
-
-
Gianfrani, C.1
Oseroff, C.2
Sidney, J.3
Chesnut, R.W.4
Sette, A.5
-
19
-
-
0141702339
-
Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A
-
Gog, J. R., G. F. Rimmelzwaan, A. D. Osterhaus, and B. T. Grenfell. 2003. Population dynamics of rapid fixation in cytotoxic T lymphocyte escape mutants of influenza A. Proc. Natl. Acad. Sci. USA 100:11143-11147.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11143-11147
-
-
Gog, J.R.1
Rimmelzwaan, G.F.2
Osterhaus, A.D.3
Grenfell, B.T.4
-
20
-
-
0024246812
-
Recognition of influenza a matrix protein by HLA-A2-restricted cytotoxic T lymphocytes. Use of analogues to orientate the matrix peptide in the HLA-A2 binding site
-
Gotch, F., A. McMichael, and J. Rothbard. 1988. Recognition of influenza A matrix protein by HLA-A2-restricted cytotoxic T lymphocytes. Use of analogues to orientate the matrix peptide in the HLA-A2 binding site. J. Exp. Med. 168:2045-2057.
-
(1988)
J. Exp. Med.
, vol.168
, pp. 2045-2057
-
-
Gotch, F.1
McMichael, A.2
Rothbard, J.3
-
21
-
-
0035913225
-
Evolution and transmission of stable CTL escape mutations in HIV infection
-
Goulder, P. J., C. Brander, Y. Tang, C. Tremblay, R. A. Colbert, M. M. Addo, E. S. Rosenberg, T. Nguyen, R. Allen, A. Trocha, M. Altfeld, S. He, M. Bunce, R. Funkhouser, S. I. Pelton, S. K. Burchett, K. McIntosh, B. T. Korber, and B. D. Walker. 2001. Evolution and transmission of stable CTL escape mutations in HIV infection. Nature 412:334-338.
-
(2001)
Nature
, vol.412
, pp. 334-338
-
-
Goulder, P.J.1
Brander, C.2
Tang, Y.3
Tremblay, C.4
Colbert, R.A.5
Addo, M.M.6
Rosenberg, E.S.7
Nguyen, T.8
Allen, R.9
Trocha, A.10
Altfeld, M.11
He, S.12
Bunce, M.13
Funkhouser, R.14
Pelton, S.I.15
Burchett, S.K.16
McIntosh, K.17
Korber, B.T.18
Walker, B.D.19
-
22
-
-
16944366524
-
Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS
-
Goulder, P. J., R. E. Phillips, R. A. Colbert, S. McAdam, G. Ogg, M. A. Nowak, P. Giangrande, G. Luzzi, B. Morgan, A. Edwards, A. J. McMichael, and S. Rowland-Jones. 1997. Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS. Nat. Med. 3:212-217.
-
(1997)
Nat. Med.
, vol.3
, pp. 212-217
-
-
Goulder, P.J.1
Phillips, R.E.2
Colbert, R.A.3
McAdam, S.4
Ogg, G.5
Nowak, M.A.6
Giangrande, P.7
Luzzi, G.8
Morgan, B.9
Edwards, A.10
McMichael, A.J.11
Rowland-Jones, S.12
-
23
-
-
0026471097
-
Molecular analysis of the association of HLA-B53 and resistance to severe malaria
-
Hill, A. V., J. Elvin, A. C. Willis, M. Aidoo, C. E. Allsopp, F. M. Gotch, X. M. Gao, M. Takiguchi, B. M. Greenwood, A. R. Townsend et al. 1992. Molecular analysis of the association of HLA-B53 and resistance to severe malaria. Nature 360:434-439.
-
(1992)
Nature
, vol.360
, pp. 434-439
-
-
Hill, A.V.1
Elvin, J.2
Willis, A.C.3
Aidoo, M.4
Allsopp, C.E.5
Gotch, F.M.6
Gao, X.M.7
Takiguchi, M.8
Greenwood, B.M.9
Townsend, A.R.10
-
24
-
-
0034705225
-
A DNA transfection system for generation of influenza A virus from eight plasmids
-
Hoffmann, E., G. Neumann, Y. Kawaoka, G. Hobom, and R. G. Webster. 2000. A DNA transfection system for generation of influenza A virus from eight plasmids. Proc. Natl. Acad. Sci. USA 97:6108-6113.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6108-6113
-
-
Hoffmann, E.1
Neumann, G.2
Kawaoka, Y.3
Hobom, G.4
Webster, R.G.5
-
25
-
-
0033564710
-
Human CD8+ and CD4+ T lymphocyte memory to influenza a viruses of swine and avian species
-
Jameson, J., J. Cruz, M. Terajima, and F. A. Ennis. 1999. Human CD8+ and CD4+ T lymphocyte memory to influenza A viruses of swine and avian species. J. Immunol. 162:7578-7583.
-
(1999)
J. Immunol.
, vol.162
, pp. 7578-7583
-
-
Jameson, J.1
Cruz, J.2
Terajima, M.3
Ennis, F.A.4
-
26
-
-
0035808775
-
Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses
-
Kelleher, A. D., C. Long, E. C. Holmes, R. L. Allen, J. Wilson, C. Conlon, C. Workman, S. Shaunak, K. Olson, P. Goulder, C. Brander, G. Ogg, J. S. Sullivan, W. Dyer, I. Jones, A. J. McMichael, S. Rowland-Jones, and R. E. Phillips. 2001. Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses. J. Exp. Med. 193:375-386.
-
(2001)
J. Exp. Med.
, vol.193
, pp. 375-386
-
-
Kelleher, A.D.1
Long, C.2
Holmes, E.C.3
Allen, R.L.4
Wilson, J.5
Conlon, C.6
Workman, C.7
Shaunak, S.8
Olson, K.9
Goulder, P.10
Brander, C.11
Ogg, G.12
Sullivan, J.S.13
Dyer, W.14
Jones, I.15
McMichael, A.J.16
Rowland-Jones, S.17
Phillips, R.E.18
-
27
-
-
0002222774
-
Computational analysis of HIV molecular sequences
-
A. G. Rodrigo and G. H. Learn (ed.) . Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Korber, B. 2000. Computational analysis of HIV molecular sequences, p. 55-72. In A. G. Rodrigo and G. H. Learn (ed.), HIV signature and sequence variation analysis. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(2000)
HIV Signature and Sequence Variation Analysis
, pp. 55-72
-
-
Korber, B.1
-
28
-
-
0028145416
-
Virus escape from CTL recognition
-
Koup, R. A. 1994. Virus escape from CTL recognition. J. Exp. Med. 180:779-782.
-
(1994)
J. Exp. Med.
, vol.180
, pp. 779-782
-
-
Koup, R.A.1
-
29
-
-
0028909051
-
Human HLA-A0201-restricted cytotoxic T lymphocyte recognition of influenza A is dominated by T cells bearing the V beta 17 gene segment
-
Lehner, P. J., E. C. Wang, P. A. Moss, S. Williams, K. Platt, S. M. Friedman, J. I. Bell, and L. K. Borysiewicz. 1995. Human HLA-A0201-restricted cytotoxic T lymphocyte recognition of influenza A is dominated by T cells bearing the V beta 17 gene segment. J. Exp. Med. 181:79-91.
-
(1995)
J. Exp. Med.
, vol.181
, pp. 79-91
-
-
Lehner, P.J.1
Wang, E.C.2
Moss, P.A.3
Williams, S.4
Platt, K.5
Friedman, S.M.6
Bell, J.I.7
Borysiewicz, L.K.8
-
30
-
-
4544279879
-
Genetic analysis of human H2N2 and early H3N2 influenza viruses, 1957-1972: Evidence for genetic divergence and multiple reassortment events
-
Lindstrom, S. E., N. J. Cox, and A. Klimov. 2004. Genetic analysis of human H2N2 and early H3N2 influenza viruses, 1957-1972: evidence for genetic divergence and multiple reassortment events. Virology 328:101-119.
-
(2004)
Virology
, vol.328
, pp. 101-119
-
-
Lindstrom, S.E.1
Cox, N.J.2
Klimov, A.3
-
31
-
-
13744253459
-
Attenuating mutations of the matrix gene of influenza A/WSN/33 virus
-
Liu, T., and Z. Ye. 2005. Attenuating mutations of the matrix gene of influenza A/WSN/33 virus. J. Virol. 79:1918-1923.
-
(2005)
J. Virol.
, vol.79
, pp. 1918-1923
-
-
Liu, T.1
Ye, Z.2
-
32
-
-
34447622953
-
The value of a database in surveillance and vaccine selection
-
A. D. M. E. Osterhaus, N. Cox, and A. W. Hampson (ed.) . Elsevier Science, Amsterdam, The Netherlands
-
Macken, C., H. Lu, J. Goodman, and L. Boykin. 2001. The value of a database in surveillance and vaccine selection, p. 103-106. In A. D. M. E. Osterhaus, N. Cox, and A. W. Hampson (ed.), Options for the control of influenza IV. Elsevier Science, Amsterdam, The Netherlands.
-
(2001)
Options for the Control of Influenza IV
, pp. 103-106
-
-
Macken, C.1
Lu, H.2
Goodman, J.3
Boykin, L.4
-
33
-
-
0028957424
-
Definition of a human T cell epitope from influenza A non-structural protein 1 using HLA-A2.1 transgenic mice
-
Man, S., M. H. Newberg, V. L. Crotzer, C. J. Luckey, N. S. Williams, Y. Chen, E. L. Huczko, J. P. Ridge, and V. H. Engelhard. 1995. Definition of a human T cell epitope from influenza A non-structural protein 1 using HLA-A2.1 transgenic mice. Int. Immunol. 7:597-605.
-
(1995)
Int. Immunol.
, vol.7
, pp. 597-605
-
-
Man, S.1
Newberg, M.H.2
Crotzer, V.L.3
Luckey, C.J.4
Williams, N.S.5
Chen, Y.6
Huczko, E.L.7
Ridge, J.P.8
Engelhard, V.H.9
-
34
-
-
0004219575
-
-
Academic Press, London, United Kingdom
-
Marsh, S., P. Parham, and L. Barber. 2000. The HLA FactsBook. Academic Press, London, United Kingdom.
-
(2000)
The HLA FactsBook
-
-
Marsh, S.1
Parham, P.2
Barber, L.3
-
35
-
-
0030891167
-
Escape of human immunodeficiency virus from immune control
-
McMichael, A. J., and R. E. Phillips. 1997. Escape of human immunodeficiency virus from immune control. Annu. Rev. Immunol. 15:271-296.
-
(1997)
Annu. Rev. Immunol.
, vol.15
, pp. 271-296
-
-
McMichael, A.J.1
Phillips, R.E.2
-
36
-
-
0028930288
-
Immunobiology of cytotoxic T-cell escape mutants of lymphocytic choriomeningitis virus
-
Moskophidis, D., and R. M. Zinkernagel. 1995. Immunobiology of cytotoxic T-cell escape mutants of lymphocytic choriomeningitis virus. J. Virol. 69:2187-2193.
-
(1995)
J. Virol.
, vol.69
, pp. 2187-2193
-
-
Moskophidis, D.1
Zinkernagel, R.M.2
-
37
-
-
0025992233
-
Extensive conservation of alpha and beta chains of the human T-cell antigen receptor recognizing HLA-A2 and influenza a matrix peptide
-
Moss, P. A., R. J. Moots, W. M. Rosenberg, S. J. Rowland-Jones, H. C. Bodmer, A. J. McMichael, and J. I. Bell. 1991. Extensive conservation of alpha and beta chains of the human T-cell antigen receptor recognizing HLA-A2 and influenza A matrix peptide. Proc. Natl. Acad. Sci. USA 88:8987-8990.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 8987-8990
-
-
Moss, P.A.1
Moots, R.J.2
Rosenberg, W.M.3
Rowland-Jones, S.J.4
Bodmer, H.C.5
McMichael, A.J.6
Bell, J.I.7
-
38
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
39
-
-
0030876638
-
How viruses escape from cytotoxic T lymphocytes: Molecular parameters and players
-
Oldstone, M. B. 1997. How viruses escape from cytotoxic T lymphocytes: molecular parameters and players. Virology 234:179-185.
-
(1997)
Virology
, vol.234
, pp. 179-185
-
-
Oldstone, M.B.1
-
40
-
-
0028286120
-
Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site
-
Ota, T., and M. Nei. 1994. Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site. Mol. Biol. Evol. 11:613-619.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 613-619
-
-
Ota, T.1
Nei, M.2
-
41
-
-
0026495447
-
Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2
-
Parker, K. C., M. A. Bednarek, L. K. Hull, U. Utz, B. Cunningham, H. J. Zweerink, W. E. Biddison, and J. E. Coligan. 1992. Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2. J. Immunol. 149:3580-3587.
-
(1992)
J. Immunol.
, vol.149
, pp. 3580-3587
-
-
Parker, K.C.1
Bednarek, M.A.2
Hull, L.K.3
Utz, U.4
Cunningham, B.5
Zweerink, H.J.6
Biddison, W.E.7
Coligan, J.E.8
-
42
-
-
0242409395
-
Simian-human immunodeficiency virus escape from cytotoxic T-lymphocyte recognition at a structurally constrained epitope
-
Peyerl, F. W., D. H. Barouch, W. W. Yeh, H. S. Bazick, J. Kunstman, K. J. Kunstman, S. M. Wolinsky, and N. L. Letvin. 2003. Simian-human immunodeficiency virus escape from cytotoxic T-lymphocyte recognition at a structurally constrained epitope. J. Virol. 77:12572-12578.
-
(2003)
J. Virol.
, vol.77
, pp. 12572-12578
-
-
Peyerl, F.W.1
Barouch, D.H.2
Yeh, W.W.3
Bazick, H.S.4
Kunstman, J.5
Kunstman, K.J.6
Wolinsky, S.M.7
Letvin, N.L.8
-
43
-
-
10044227534
-
Fitness costs limit viral escape from cytotoxic T lymphocytes at a structurally constrained epitope
-
Peyerl, F. W., H. S. Bazick, M. H. Newberg, D. H. Barouch, J. Sodroski, and N. L. Letvin. 2004. Fitness costs limit viral escape from cytotoxic T lymphocytes at a structurally constrained epitope. J. Virol. 78:13901-13910.
-
(2004)
J. Virol.
, vol.78
, pp. 13901-13910
-
-
Peyerl, F.W.1
Bazick, H.S.2
Newberg, M.H.3
Barouch, D.H.4
Sodroski, J.5
Letvin, N.L.6
-
44
-
-
0025827529
-
Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
-
Phillips, R. E., S. Rowland-Jones, D. F. Nixon, F. M. Gotch, J. P. Edwards, A. O. Ogunlesi, J. G. Elvin, J. A. Rothbard, C. R. Bangham, C. R. Rizza et al. 1991. Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition. Nature 354:453-459.
-
(1991)
Nature
, vol.354
, pp. 453-459
-
-
Phillips, R.E.1
Rowland-Jones, S.2
Nixon, D.F.3
Gotch, F.M.4
Edwards, J.P.5
Ogunlesi, A.O.6
Elvin, J.G.7
Rothbard, J.A.8
Bangham, C.R.9
Rizza, C.R.10
-
45
-
-
6344249131
-
Between-host evolution of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1: An approach based on phylogenetically independent comparisons
-
Piontkivska, H., and A. L. Hughes. 2004. Between-host evolution of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1: an approach based on phylogenetically independent comparisons. J. Virol. 78:11758-11765.
-
(2004)
J. Virol.
, vol.78
, pp. 11758-11765
-
-
Piontkivska, H.1
Hughes, A.L.2
-
46
-
-
0024992268
-
Viral escape by selection of cytotoxic T cell-resistant virus variants in vivo
-
Pircher, H., D. Moskophidis, U. Rohrer, K. Burki, H. Hengartner, and R. M. Zinkernagel. 1990. Viral escape by selection of cytotoxic T cell-resistant virus variants in vivo. Nature 346:629-633.
-
(1990)
Nature
, vol.346
, pp. 629-633
-
-
Pircher, H.1
Moskophidis, D.2
Rohrer, U.3
Burki, K.4
Hengartner, H.5
Zinkernagel, R.M.6
-
47
-
-
0031048597
-
Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection
-
Price, D. A., P. J. Goulder, P. Klenerman, A. K. Sewell, P. J. Easterbrook, M. Troop, C. R. Bangham, and R. E. Phillips. 1997. Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection, Proc. Natl. Acad. Sci. USA 94:1890-1895.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1890-1895
-
-
Price, D.A.1
Goulder, P.J.2
Klenerman, P.3
Sewell, A.K.4
Easterbrook, P.J.5
Troop, M.6
Bangham, C.R.7
Phillips, R.E.8
-
48
-
-
0031659446
-
The influence of antigenic variation on cytotoxic T lymphocyte responses in HIV-1 infection
-
Price, D. A., U. C. Meier, P. Klenerman, M. A. Purbhoo, R. E. Phillips, and A. K. Sewell. 1998. The influence of antigenic variation on cytotoxic T lymphocyte responses in HIV-1 infection. J. Mol. Med. 76:699-708.
-
(1998)
J. Mol. Med.
, vol.76
, pp. 699-708
-
-
Price, D.A.1
Meier, U.C.2
Klenerman, P.3
Purbhoo, M.A.4
Phillips, R.E.5
Sewell, A.K.6
-
49
-
-
0031866073
-
Comparison of RNA hybridization, hemagglutination assay, titration of infectious virus and immunofluorescence as methods for monitoring influenza virus replication in vitro
-
Rimmelzwaan, G. F., M. Baars, E. C. Claas, and A. D. Osterhaus. 1998. Comparison of RNA hybridization, hemagglutination assay, titration of infectious virus and immunofluorescence as methods for monitoring influenza virus replication in vitro. J. Virol. Methods 74:57-66.
-
(1998)
J. Virol. Methods
, vol.74
, pp. 57-66
-
-
Rimmelzwaan, G.F.1
Baars, M.2
Claas, E.C.3
Osterhaus, A.D.4
-
50
-
-
3543128220
-
Functional compensation of a detrimental amino acid substitution in a cytotoxic-T-lymphocyte epitope of influenza a viruses by comutations
-
Rimmelzwaan, G. F., E. G. M. Berkhoff, N. J. Nieuwkoop, R. A. M. Fouchier, and A. D. M. E. Osterhaus. 2004. Functional compensation of a detrimental amino acid substitution in a cytotoxic-T-lymphocyte epitope of influenza A viruses by comutations. J. Virol. 78:8946-8949.
-
(2004)
J. Virol.
, vol.78
, pp. 8946-8949
-
-
Rimmelzwaan, G.F.1
Berkhoff, E.G.M.2
Nieuwkoop, N.J.3
Fouchier, R.A.M.4
Osterhaus, A.D.M.E.5
-
51
-
-
2442519025
-
Sequence variation in ihe influenza a virus nucleoprotein associated with escape from cytotoxic T lymphocytes
-
Rimmelzwaan, G. F., A. C. Boon, J. T. Voeten, E. G. Berkhoff, R. A. Fouchier, and A. D. Osterhaus. 2004. Sequence variation in ihe influenza A virus nucleoprotein associated with escape from cytotoxic T lymphocytes. Virus Res. 103:97-100.
-
(2004)
Virus Res.
, vol.103
, pp. 97-100
-
-
Rimmelzwaan, G.F.1
Boon, A.C.2
Voeten, J.T.3
Berkhoff, E.G.4
Fouchier, R.A.5
Osterhaus, A.D.6
-
52
-
-
20044369940
-
Full restoration of viral fitness by multiple compensatory comutations in the nucleoprotein of influenza A virus cytotoxic T lymphocyte escape mutants
-
Rimmelzwaan, G. F., E. G. Berkhoff, N. J. Nieuwkoop, D. J. Smith, R. A. Fouchier, and A. D. Osterhaus, 2005. Full restoration of viral fitness by multiple compensatory comutations in the nucleoprotein of influenza A virus cytotoxic T lymphocyte escape mutants. J. Gen. Virol. 86:1801-1805.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 1801-1805
-
-
Rimmelzwaan, G.F.1
Berkhoff, E.G.2
Nieuwkoop, N.J.3
Smith, D.J.4
Fouchier, R.A.5
Osterhaus, A.D.6
-
53
-
-
0034623979
-
A randomized, double blind study in young healthy adults comparing cell mediated and humoral immune responses induced by influenza ISCOM vaccines and conventional vaccines
-
Rimmelzwaan, G. F., N. Nieuwkoop, A. Brandenburg, G. Sutter, W. E. Beyer, D. Maher, J. Bates, and A. D. Osterhaus. 2000. A randomized, double blind study in young healthy adults comparing cell mediated and humoral immune responses induced by influenza ISCOM vaccines and conventional vaccines. Vaccine 19:1180-1187.
-
(2000)
Vaccine
, vol.19
, pp. 1180-1187
-
-
Rimmelzwaan, G.F.1
Nieuwkoop, N.2
Brandenburg, A.3
Sutter, G.4
Beyer, W.E.5
Maher, D.6
Bates, J.7
Osterhaus, A.D.8
-
54
-
-
0038281510
-
HLA-B*0702 transgenic, H-2KbDb double-knockout mice: Phenotypical and functional characterization in response to influenza virus
-
Rohrlich, P. S., S. Cardinaud, H. Firat, M. Lamari, P. Briand, N. Escriou, and F. A. Lemonnier. 2003. HLA-B*0702 transgenic, H-2KbDb double-knockout mice: phenotypical and functional characterization in response to influenza virus. Int. Immunol. 15:765-772.
-
(2003)
Int. Immunol.
, vol.15
, pp. 765-772
-
-
Rohrlich, P.S.1
Cardinaud, S.2
Firat, H.3
Lamari, M.4
Briand, P.5
Escriou, N.6
Lemonnier, F.A.7
-
55
-
-
0038300653
-
A structural basis for immunodominant human T cell receptor recognition
-
Stewart-Jones, G. B., A. J. McMichael, J. I. Bell, D. I. Stuart, and E. Y. Jones. 2003. A structural basis for immunodominant human T cell receptor recognition. Nat. Immunol. 4:657-663.
-
(2003)
Nat. Immunol.
, vol.4
, pp. 657-663
-
-
Stewart-Jones, G.B.1
McMichael, A.J.2
Bell, J.I.3
Stuart, D.I.4
Jones, E.Y.5
-
56
-
-
0028180115
-
HLA-B*3501-peptide interactions: Role of anchor residues of peptides in their binding to HLA-B*3501 molecules
-
Takamiya, Y., C. Schonbach, K. Nokihara, M. Yamaguchi, S. Ferrone, K. Kano, K. Egawa, and M. Takiguchi. 1994. HLA-B*3501-peptide interactions: role of anchor residues of peptides in their binding to HLA-B*3501 molecules. Int. Immunol. 6:255-261.
-
(1994)
Int. Immunol.
, vol.6
, pp. 255-261
-
-
Takamiya, Y.1
Schonbach, C.2
Nokihara, K.3
Yamaguchi, M.4
Ferrone, S.5
Kano, K.6
Egawa, K.7
Takiguchi, M.8
-
57
-
-
0022483534
-
The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides
-
Townsend, A. R., J. Rothbard, F. M. Gotch, G. Bahadur, D. Wraith, and A. J. McMichael. 1986. The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides. Cell 44:959-968.
-
(1986)
Cell
, vol.44
, pp. 959-968
-
-
Townsend, A.R.1
Rothbard, J.2
Gotch, F.M.3
Bahadur, G.4
Wraith, D.5
McMichael, A.J.6
-
58
-
-
0033928393
-
Antigenic drift in the influenza a virus (H3N2) nucleoprotein and escape from recognition by cytotoxic T lymphocytes
-
Voeten, J. T. M., T. M. Bestebroer, N. J. Nieuwkoop, R. A. M. Fouchier, A. D. M. E. Osterhaus, and G. F. Rimmelzwaan. 2000. Antigenic drift in the influenza A virus (H3N2) nucleoprotein and escape from recognition by cytotoxic T lymphocytes. J. Virol. 74:6800-6807.
-
(2000)
J. Virol.
, vol.74
, pp. 6800-6807
-
-
Voeten, J.T.M.1
Bestebroer, T.M.2
Nieuwkoop, N.J.3
Fouchier, R.A.M.4
Osterhaus, A.D.M.E.5
Rimmelzwaan, G.F.6
-
59
-
-
0035163814
-
Cross-reactivity between hepatitis C virus and influenza A virus determinant-specific cytotoxic T cells
-
Wedemeyer, H., E. Mizukoshi, A. R. Davis, J. R. Bennink, and B. Rehermann. 2001. Cross-reactivity between hepatitis C virus and influenza A virus determinant-specific cytotoxic T cells. J. Virol. 75:11392-11400.
-
(2001)
J. Virol.
, vol.75
, pp. 11392-11400
-
-
Wedemeyer, H.1
Mizukoshi, E.2
Davis, A.R.3
Bennink, J.R.4
Rehermann, B.5
-
60
-
-
0028968636
-
Persistent hepatitis C virus infection in a chimpanzee is associated with emergence of a cytotoxic T lymphocyte escape variant
-
Weiner, A., A. L. Erickson, J. Kansopon, K. Crawford, E. Muchmore, A. L. Hughes, M. Houghton, and C. M. Walker. 1995. Persistent hepatitis C virus infection in a chimpanzee is associated with emergence of a cytotoxic T lymphocyte escape variant. Proc. Natl. Acad. Sci. USA 92:2755-2759.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2755-2759
-
-
Weiner, A.1
Erickson, A.L.2
Kansopon, J.3
Crawford, K.4
Muchmore, E.5
Hughes, A.L.6
Houghton, M.7
Walker, C.M.8
|