Electrochemical detection of single-nucleotide mismatches using an electrode microarray

Analytical Chemistry

Volumn 78, Issue 17, 2006, Pages 6096-6101

  Li, Xiaohong ^a   Lee, Jeremy S ^a   Kraatz, Heinz Bernhard ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DETECTION LIMIT; ELECTRODE MICROARRAYS; NUCLEOTIDE MISMATCHES;

CHARGE TRANSFER; ELECTRIC PROPERTIES; EQUIVALENT CIRCUITS; IMPURITIES; PROTEINS; SPECTROSCOPY;

DNA;

DOUBLE STRANDED DNA; GOLD; NUCLEOTIDE; ZINC;

ARTICLE; BASE MISPAIRING; DNA HYBRIDIZATION; DNA MICROARRAY; DNA SEQUENCE; ELECTROCHEMICAL ANALYSIS; ELECTROCHEMICAL IMPEDANCE SPECTROSCOPY; ELECTRODE; MICROARRAY ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

ELECTROCHEMISTRY; ELECTRODES; IN SITU HYBRIDIZATION; NUCLEOTIDES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SENSITIVITY AND SPECIFICITY;

EID: 33748493193     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac060533b     Document Type: Article

References (41)

1. Skogerboe, K. J. Anal. Chem. 1995, 67, 449R-454R.
2. Southern, E. M. Trends Genet. 1996, 12, 110-115.
3. Eng, C.; Vijg, J. Nat. Biotechnol. 1997, 15, 422-426.
4. Okamoto, A.; Kanatani, K.; Saito, O. J. Am. Chem. Soc. 2004, 126, 4820.
5. Drummond, T. G.; Hill, M. G.; Barton, J. K. Nat. Biotechnol. 2003, 21, 1192-1199.
6. Patolsky, F.; Lichtenstein, A.; Willner, I. Nat. Biotechnol. 2001, 19, 253.
7. Throp, H. H. Top. Curr. Chem. 2004, 237, 159-181.
8. Yu, C. J.; Wan, Y. J.; Yowanto, H.; Li, J.; Tao, C. L.; James, M. D.; Tan, C. L.; Blackburn, G. F.; Meade, T. J. J. Am. Chem. Soc. 2001, 123, 11155-11161.
9. Kelley, S. O.; Boon, E. M.; Barton, J. K.; Jackson, N. M.; Hill, M. G. Nucleic Acids Res. 1999, 27, 4830-4837.
10. Caruana, D. J.; Heller, A. J. Am. Chem. Soc. 1999, 121, 769-774.
11. Liu, G. D.; Lee, T. M. H.; Wang, J. J. Am. Chem. Soc. 2005, 127, 38-39.
12. Millan, K. M.; Saravallo, A.; Mikkelsen, S. R. Anal. Chem. 1994, 66, 2943-48.
13. Di Guisto, D. A.; Walssoff, W. A.; Giesebrecht, S.; Gooding, J. J.; King, G. C. J. Am. Chem. Soc. 2004, 126, 4120.
14. Wagner, R.; Debbie, P.; Radman, M. Nucleic Acids Res. 1995, 11, 3944-3948.
15. Gotoh, M.; Hasebe, M.; Ohira, T.; Hasegawa, Y.; Shinohara, Y.; Sota, H.; Nakao, J.; Tosu, M. Genet. Anal.: Biomol. Eng. 1997, 14, 47-50.
16. Geschwind, D. H.; Rhee, R.; Nelson, S. F. Genet. Anal. 1996, 13, 105-111.
17. Boon, E. M.; Livingston, A. L.; Chmiel, N. H.; David, S. S.; Barton, J. K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 12543-12547.
18. Li, C. Z.; Long, Y. T.; Lee, J. S.; Kraatz, H. B. Chem. Commun. 2004, 574-575;
19. Paleček, E.; Masařik, M.; Kizek, R.; Kuhlmeier, D.; Hassmann, J.; Schülein, J. Anal. Chem. 2004, 76, 5930-5936.
20. Reed, R.; Holmes, D.; Weyers, J.; Jones, A. Practical Skills in Biomolecular Sciences; Addison-Wesley Longman Ltd.: Edinburgh Gate, Harlow, England, 1998.
21. Walker, M. J.; Rapley, R. Molecular Biology and Biotechnology; The Royal Society of Chemistry: Thomas Graham House, Cambridge, UK, 2000.
22. Campàs, M.; Katakis, I. Trends Anal. Chem. 2004, 23, 49-62.
23. Jain, K. K. Science 2001, 294, 621-623.
24. Afanassiev, V.; Hanemann, V.; Wolfi, S. Nucleic Acids Res. 2000, 28, e66.
25. Proundnikov, D.; Timofeev, E.; Mirzabekov, A. Anal. Biochem. 1998, 259, 34-41.
26. Ferguson, J. A.; Steemers, F. J.; Walt, D. R. Anal. Chem. 2000, 72, 5618-5624.
27. Ali, M. F.; Kirby, R.; Goodey, A. P.; Rodriguez, M. D.; Ellington, A. D.; Neikirk, D. P.; McDevitt, J. T. Anal. Chem. 2003, 75, 4732-4739.
28. Behrensdorf, H. A.; Pignot, M.; Windhab, N.; Kappel A. Nucleic Acids Res. 2002, 30, e64.
29. Bi, L.-J.; Zhou, Y. F.; Zhang, J.-Y.; Zhang, Z.-P.; Xie, B.; Zhang, C.-G. Anal. Chem. 2003, 75, 4113-4119.
30. Li, X. H.; Zhou, Y. L.; Sutherland, T. C.; Baker, B.; Lee, J. S.; Kraatz, H.-B. Anal Chem. 2005, 77, 5766-5769.
31. Long, Y.-T.; Li, C.-Z.; Sutherland, T. C.; Kraatz, H.-B.; Lee, J. S. Anal. Chem. 2004, 76, 4059-4065.
32. Long, Y.-T.; Li, C.-Z.; Kraatz, H.-B.; Lee, J. S. Biophys. J. 2003, 84, 3218-3225.
33. Liu, B.; Bard, A. J.; Li, C.-Z.; Kraatz, H.-B. J. Phys. Chem. B. 2005, 109, 5193-5198.
34. Rakitin, A.; Aich, P.; Papadopoulos, C.; Kobzar, Y.; Vedeneev, A. S.; Lee, J. S.; Xu, J. M. Phys. Rev. Lett. 2001, 86, 3670.
35. Dijksma, M.; Boukamp, B. A.; Kamp, B.; van Bennekom, W. P. Langmuir 2002, 18, 3105-3112.
36. Liu, Tao.; Barton, J. K. J. Am. Chem. Soc. 2005, 127, 10160-10161.
37. Kelley, S. O.; Jackson, N. M.; Hill, M. G.; Barton, J. K. Angew. Chem., Int. Ed. 1999, 38, 941-945.
38. Li, C.-Z.; Long, Y.-T.; Kraatz, H.-B.; Lee, J. S. J. Phys. Chem. B 2003, 107, 2291-2296.
39. Lee, J. S.; Latimer, L. J. P.; Reid, R. S. Biochem. Cell Biol. 1993, 71, 162-168.
40. Aich, P.; Labiuk, S. L.; Tari, L. W.; Delbaere, L. J. T.; Roesler, W. J.; Falk, K. J.; Steer, R. P.; Lee, J. S. J. Mol. Biol. 1999, 294, 477-485.
41. Leviky, R.; Herne, T. M.; Tarlov, M. J.; Satija S. K. J. Am. Chem. Soc. 1998, 120, 9787.