AC impedance spectroscopy of native DNA and M-DNA

Biophysical Journal

Volumn 84, Issue 5, 2003, Pages 3218-3225

  Long, Yi Tao ^a   Li, Chen Zhong ^a   Kraatz, Heinz Bernhard ^a   Lee, Jeremy S ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DOUBLE STRANDED DNA; GOLD; ION; MAGNESIUM ION; METAL; THIOL GROUP; ZINC ION;

ARTICLE; BASE PAIRING; ELECTROCHEMISTRY; ELECTRODE; ELECTRON TRANSPORT; FILM; IMPEDANCE SPECTROSCOPY; OXIDATION REDUCTION REACTION; PH; SPECTROSCOPY; SURFACE CHARGE;

EID: 0038298715     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(03)70046-0     Document Type: Article

References (51)

1. Aich, P., L. Labiuk, W. Tari, L. J. T. Delbaere, W. J. Roesler, K. J. Falk, R. P. Steer, and J. S. Lee. 1999. M-DNA: a complex between divalent metal ions and DNA which behaves as a molecular wire. J. Mol. Biol. 294: 477-483.
2. Aich, P., R. J. S. Skinner, S. D. Wettig, R. P. Steer, and J. S. Lee. 2002. Long range molecular wire behaviour in a metal complex of DNA. J. Biomol. Struct. Dyn. 20:1-6.
3. Alfonta, L., and I. Willner. 2001. Electronic transduction of biocatalytic transformations on nucleic acid-functionalized surfaces. Chem. Commun. 1492-1493.
4. Ambroise, A., and B. G. Maiya. 2000. Ruthenium(II) complexes of redox-related, modified dipyridophenazine ligands: synthesis, characterization, and DNA interaction. Inorg. Chem. 39:4256-4263.
5. Bard, A. J., and L. R. Faulkner. 2001. Electrochemical Methods: Fundamentals and Applications. John Wiley & Sons, Inc., New York.
6. Bardea, A., F. Patolsky, A. Dagan, and I. Willner. 1999. Sensing and amplification of oligonucleotide-DNA interactions by means of impedance spectroscopy: a route to a Tay-Sachs sensor. Chem. Commun. 21-22.
7. Barnett, R. N., C. L. Cleveland, A. Joy, U. Landman, and G. B. Schuster. 2001. Charge migration in DNA: ion-gated transport. Science. 294:567-571.
8. Bixon, M., B. Giese, S. Wessely, T. Langenbacher, M. E. Michel-Beyerle, and J. Jortner. 1999. Long-range charge hopping in DNA. Proc. Natl. Acad. Sci. USA. 96:11713-11716.
9. Boon, E. M., D. M. Ceres, T. G. Drummond, M. G. Hill, and J. K. Barton. 2000. Mutation detection by electrocatalysis at DNA-modified electrodes. Nat. Biotechnol. 18:1096-1100.
10. Boubour, E., and R. B. Lennox. 2000. Insulating properties of self-assembled monolayers monitored by impedance spectroscopy. Langmuir. 16:4222-4228.
11. Braun, E., Y. Eichen, U. Sivan, and G. Ben Yoseph. 1998. DNA-templated assembly and electrode attachment of a conducting silver wire. Nature. 391:775-778.
12. Carter, M. T., and A. J. Bard. 1987. Voltammetric studies of the interaction of tris(1,10-phenanthroline)cobalt(III) with DNA. J. Am. Chem. Soc. 109:7528-7530.
13. Colonna, B., and L. Echegoyen. 2001. Templated SAMs for metal recognition. Chem. Commun. 1104-1105.
14. Finklea, H. O., D. A. Snider, J. Fedyk, E. Sabatani, Y. Gafni, and I. Rubinstein. 1993a. Characterization of octadecanethiol-coated gold electrodes as microarray electrodes by cyclic voltammetry and AC impedance spectroscopy. Langmuir. 9:3660-3667.
15. Finklea, H. O., M. S. Ravenscroft, and D. A. Snider. 1993b. Electrolyte and temperature effects on long range electron transfer across self-assembled monolayers. Langmuir. 9:223-227.
16. Finklea, H. O. 1996. Electroanalytical Chemistry. Marcel Dekker Inc., New York.
17. Fodor, S. P. A., R. P. Rava, X. H. C. Huang, A. C. Pease, and C. P. Holmes. 1993. Multiplexed biochemical assays with biological chips. Nature. 364:555-556.
18. Giese, B., J. Amaudrut, A. K. Kohler, M. Spormann, and S. Wessely. 2001. Direct observation of hole transport between adenine bases and by tunnelling. Nature. 412:318-320.
19. Gooding, J. J. 2002. Electrochemical DNA hybridization biosensors. Electroanalysis. 14:1149-1156.
20. Galka, M. M., and H.-B. Kraatz. 2002. Electron transfer studies on self-assembled monolayers of helical ferrocenoyl-oligoproline-cystamine bound to gold. Chem. Phys. Chem. 3:356-359.
21. Hashimoto, K., K. Ito, and Y. Ishimori. 1994. Sequence-specific gene detection with a gold electrode modified with DNA probes and an electrochemically active dye. Anal. Chem. 66:3830-3833.
22. Henderson, P. T., D. Jones, G. Hampikian, Y. Kan, and G. B. Schuster. 1999. Long-distance charge transport in duplex DNA: the phonon assisted polaron-like hopping mechanism. Proc. Natl. Acad. Sci. USA. 96:8353-8358.
23. Herne, T. M., and M. J. Tarlov. 1997. Characterization of DNA probes immobilized on gold surface. J. Am. Chem. Soc. 119:8916-8920.
24. Ishida, T., N. Choi, W. Mizutani, H. Tokumoto, I. Kojima, H. Azehara, H. Hokari, U. Akiba, and M. Fujihira. 1999. High-resolution x-ray photoelectron spectra of organosulfur monolayers on Au(111): S(2p) spectral dependence on molecular species. Langmuir. 15:6799-6806.
25. Jackson, N. M., and M. G. Hill. 2001. Electrochemistry at DNA-modified surfaces: new probes for charge transport through the double helix. Curr. Opin. Chem. Biol. 5:209-215.
26. Janek, R. P., W. R. Fawcett, and A. Ulman. 1998. Impedance spectroscopy of self-assembled monolayers on Au(111): sodium ferrocyanide charge transfer at modified electrodes. Langmuir. 14:3011-3018.
27. Jortner, J., M. Bixon, T. Langenbacher, and M. E. Michel-Beyerle. 1998. Charge transfer and transport in DNA. Proc. Natl. Acad. Sci. USA. 95:12759-12765.
28. Kelley, S. O., J. K. Barton, N. M. Jackson, and M. G. Hill. 1997. Electrochemistry of methylene blue bound to a DNA-modified electrode. Bioconjugate Chem. 8:31-37.
29. Kelly, S. O., N. M. Jackson, M. G. Hill, and J. K. Barton. 1999. Longrange electron transfer through DNA films. Angew. Chem. Int. Ed. 38: 941-945.
30. Kertesz, V., N. A. Whittemore, J. Q. Chambers, M. S. McKinney, and D. C. Baker. 2000. Surface titration of DNA-modified gold electrodes with a thiol-tethered anthraquinone. J. Electroanal. Chem. 493:28-36.
31. Kharitonov, A. B., L. Alfonta, E. Katz, and I. Willner. 2000. Probing of bioaffinity interactions at interfaces using impedance spectroscopy and chronopotentiometry. J. Electroanal. Chem. 487:133-141.
32. Kim, K., and J. Kwak. 2001. Faradaic impedance titration of pure 3-mercaptopropionic acid and ethanethiol mixed monolayers on gold. J. Electroanal. Chem. 512:83-91.
33. Kondo, T., M. Yanagida, K. Shimazu, and K. Uosaki. 1998. Determination of thickness of a self-assembled monolayer of dodecanethiol on Au(111) by angle-resolved z-ray photoelectron spectroscopy. Langmuir. 14:5656-5658.
34. 2+ and other divalent metal ions. Biochem. Cell Biol. 71:162-168.
35. Lee, T.-Y., and Y.-B. Shim. 2001. Direct DNA hybridization detection based on the oligonucleotide-functionalized conductive polymer. Anal. Chem. 73:5629-5632.
36. Macdonald, J. R. 1987. Impedance Spectroscopy. John Wiley & Sons, New York.
37. Millan, K. M., A. Saraullo, and S. R. Mikkelsen. 1994. Diagnosis of cystic fibrosis in PCR-amplified human DNA using voltammetric DNA sensors. Anal. Chem. 66:2943-2948.
38. Murphy, C. J., M. R. Arkin, Y. Enkins, N. D. Ghatlia, S. H. Bossmann, N. J. Turro, and J. K. Barton. 1993. Long-range photoinduced electrontransfer through a DNA helix. Science. 262:1025-1029.
39. Patolsky, F., A. Lichtenstein, and I. Willner. 2001. Electronic transduction of DNA sensing processes on surfaces: amplification of DNA detection and analysis of single-base mismatches by tagged liposomes. J. Am. Chem. Soc. 123:5194-5205.
40. Pardo-Yissar, V., E. Katz, O. Lioubashevski, and I. Willner. 2001. Layered polyelectrolyte films on Au electrodes. Langmuir. 17:1110-1118.
41. Porath, D., A. Bezryadin, S. de Vries, and C. Dekker. 2000. Direct measurement of electrical transport through DNA molecules. Nature. 403: 635-638.
42. Pressprich, K. A., S. G. Maybury, R. E. Thomas, R. W. Linton, E. A. Irene, and R. W. Murray. 1989. Molecular sieving by electropolymerized porphyrin films only a few monolayers thick. J. Phys. Chem. 93:5568-5574.
43. Rakitin, A., P. Aich, C. Papaopoulos, Y. Kobzar, A. S. Vedeneev, J. S. Lee, and J. M. Xu. 2001. Metallic conduction through engineered DNA: DNA nanoelectronic building blocks. Phys. Rev. Lett. 86:3670-3673.
44. Randles, J. E. B. 1947. Kinetics of rapid electrode reactions. Discuss. Faraday Soc. 1:11-19.
45. Schena, M., D. Shalon, R. Heller, A. Chai, P. O. Brown, and R. W. Davis. 1996. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc. Natl. Acad. Sci. USA. 93:10614-10619.
46. Storm, A. J., J. van Noort, S. de Vries, and C. Dekker. 2001. Insulating behavior for DNA molecules between nanoelectrodes at the 100 nm length scale. Appl. Phys. Lett. 79:3881-3883.
47. Takagi, M. 2001. Threading intercalation to double-stranded DNA and the application to DNA sensing. Electrochemistry array technique. Pure Appl. Chem. 73:1573-1577.
48. Tani, A., A. J. Thomson, and J. N. Butt. 2001. Methylene blue as an electrochemical discriminator of single- and double-stranded oligonucleotides immobilised on gold substrates. Analyst. 126:1756-1759.
49. Ulman, A. 1996. Formation and structure of self-assembled monolayers. Chem. Rev. 96:1533-1554.
50. Yan, F., and O. A. Sadik. 2001a. Enzyme-modulated cleavage of dsDNA for studying interfacial biomolecular interactions. J. Am. Chem. Soc. 123:11335-11340.
51. Yan, F., and O. A. Sadik. 2001b. Enzyme-modulated cleavage of dsDNA for supramolecular design of biosensors. Anal. Chem. 73:5272-5280.