DNA biochip arraying, detection and amplification strategies

TrAC - Trends in Analytical Chemistry

Volumn 23, Issue 1, 2004, Pages 49-62

  Campas M ^a   Katakis, I ^a  

^a UNIVERSITAT ROVIRA I VIRGILI   (Spain)

Author keywords

DNA amplification system; DNA arraying; DNA biochip; DNA hybridization detection

Indexed keywords

AMPLIFICATION; MICROPROCESSOR CHIPS; MINIATURE BATTERIES;

DNA BIOCHIPS;

DNA;

COMPLEMENTARY DNA; DNA; DOUBLE STRANDED DNA; LIPOSOME; MESSENGER RNA; PEPTIDE NUCLEIC ACID; RADIOISOTOPE; SINGLE STRANDED DNA;

ADSORPTION; ALTERNATING CURRENT; ANALYTIC METHOD; BIOINFORMATICS; BRANCHED DNA SIGNAL AMPLIFICATION ASSAY; CHEMOLUMINESCENCE; COLORIMETRY; DIAGNOSTIC PROCEDURE; DNA DETERMINATION; DNA HYBRIDIZATION; DNA MICROARRAY; DNA PROBE; ELECTRIC CAPACITANCE; ELECTROCHEMICAL ANALYSIS; FLUORESCENCE; GENE AMPLIFICATION; GENE EXPRESSION; GENE MUTATION; HUMAN; HYDROGEN BOND; IMPEDANCE; INK JET PRINTING; MEDICAL GENETICS; MEMBRANE; MOLECULAR STABILITY; MUTATIONAL ANALYSIS; NONHUMAN; OLIGONUCLEOTIDE PROBE; PHOTOLITHOGRAPHY; PIEZOELECTRICITY; POLYMERASE CHAIN REACTION; POTENTIOMETRY; PRIORITY JOURNAL; REVIEW; ROLLING CIRCLE AMPLIFICATION; SINGLE NUCLEOTIDE POLYMORPHISM; SURFACE PLASMON RESONANCE; TYRAMIDE SIGNAL AMPLIFICATION;

EID: 0347318064     PISSN: 01659936     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0165-9936(04)00104-9     Document Type: Article

References (46)

1. Wallace R.B., Shaffer J., Murphy R.F., Bonner J., Hirose T., Itakura K. Nucleic Acids Res. 6:1979;3543.
2. Millan K.M., Mikkelsen S.R. Anal. Chem. 65:1993;2317.
3. Fodor S.P.A., Read J.L., Pirrung M.C., Stryer L., Lu A.T., Solas D. Science (Washington, DC). 251:1991;767.
4. Pease A.C., Solas D., Sullivan E.J., Cronin M.T., Holmes C.P., Fodor S.P.A. Proc. Natl. Acad. Sci. 91:1991;5022.
5. Sanders G.H.W., Manz A. Trends Anal. Chem. 16:2000;364.
6. Frost & Sullivan, World biochip market, Frost & Sullivan, New York, USA, 1997.
7. Jensen K.K., Ørum H., Nielsen P.E., Nordén B. Biochemistry. 36:1997;5072.
8. Hasebe Y., Hamada K., Hirano T., Uchiyama S. Anal. Commun. 34:1997;153.
9. Caruana D.J., Heller A. J. Am. Chem. Soc. 121:1999;769.
10. Joos B., Kuster H., Cone R. Anal. Biochem. 247:1997;96.
11. Potyrailo R.A., Conrad R.C., Ellington A.D., Hieftje G.M. Anal. Chem. 70:1998;3419.
12. Lucas S.W., Harding M.M. Anal. Biochem. 282:2000;70.
13. Wang J., Rivas G., Cai X. Electroanalysis (NY). 9:1997;395.
14. Pang D.-W., Abruña H.D. Anal. Chem. 70:1998;3162.
15. Millan K.M., Saraullo A., Mikkelsen S.R. Anal. Chem. 66:1994;2943.
16. Napier M.E., Thorp H.H. Langmuir. 13:1997;6342.
17. Steel A.B., Herne T.M., Tarlov M.J. Anal. Chem. 70:1998;4670.
18. Castellino A.M. Genome Res. 7:1997;943.
19. Zammatteo N., Jeanmart L., Hamels S., Courtois S., Louette P., Hevesi L., Remacle J. Anal. Biochem. 280:2000;143.
20. Guschin D., Yershov G., Zaslavsky A., Gemmell A., Shick V., Proudnikov D., Arenkov P., Mirzabekov A. Anal. Biochem. 250:1997;203.
21. Livache T., Fouque B., Roget A., Marchand J., Bidan G., Téoule R., Mathis G. Anal. Biochem. 255:1998;188.
22. Guedon P., Livache T., Martin F., Lesbre F., Roget A., Bidan G., Levy Y. Anal. Chem. 72:2000;6003.
23. R.A. Chappa, S.-P.J. Hu, D.G. Swan, M.J. Swanson, P.E. Guire, US Patent 6,465,178, 2002.
24. Radtkey R., Feng L., Muralhidar M., Duhon M., Canter D., DiPierro D., Fallon S., Tu E., McElfresh K., Nerenberg N., Sosnowski R.G. Nucleic Acids Res. 28:2000;e17.
25. M. Campàs, I. Katakis, Spanish Patent Application 200200129, 2002. M. Campàs, I. Katakis, PCT/EP03/00262, 2003.
26. Okahata Y., Matsunobu Y., Ijiro K., Mukae M., Murakami A., Makino K. J. Am. Chem. Soc. 114:1992;8299.
27. Zhou X.C., Huang L.Q., Li S.F.Y. Biosens. Bioelectron. 16:2001;85.
28. Tatsuma T., Watanabe Y., Oyama N., Kitakizaki K., Haba M. Anal. Chem. 71:1999;71.
29. Berney H., West J., Haefele E., Alderman J., Lane W., Collins J.K. Sens. Actuators, B. 68:2000;100.
30. Umek R.M., Lin S.W., Vieltmetter J., Terbrueggen R.H., Irvine B., Yu C.J., Kayyem J.F., Yowanto H., Blackburn G.F., Farkas D.H., Chen Y.-P. J. Mol. Diagn. 3:2001;74.
31. Jablonski E., Moomaw E.W., Tullis R.H., Ruth J.L. Nucleic Acids Res. 14:1986;6115.
32. Kawai S., Maekawajiri S., Yamane A. Anal. Biochem. 209:1993;63.
33. Bondeson K., Frostell-Karlsson A., Fagerstam L., Magnusson G. Anal. Biochem. 214:1993;245.
34. Heaton R.J., Peterson A.W., Georgiadis R.M. Proc. Natl. Acad. Sci. 98:2001;3701.
35. DiCesare J., Grossman B., Katz E., Picozza E., Ragusa R., Woudenberg T. BioTechniques. 15:1993;152.
36. Abel A.P., Weller M.G., Duveneck G.L., Ehrat M., Widmer H.M. Anal. Chem. 68:1996;2905.
37. Kleinjung F., Bier F.F., Warsinke A., Scheller F.W. Anal. Chim. Acta. 350:1997;51.
38. Steemers F.J., Ferguson J.A., Walt D.R. Nat. Biotechnol. 18:2000;91.
39. Giordano B.C., Ferrance J., Swedberg S., Hühmer A.F.R., Landers J.P. Anal. Biochem. 291:2001;124.
40. Tillib S.V., Strizhkov B.N., Mirzabekov A.D. Anal. Biochem. 292:2001;155.
41. Lizardi P.M., Huang X., Zhu Z., Bray-Ward P., Thomas D.C., Ward D.C. Nat. Genet. 19:1998;225.
42. Schweitzer B., Wiltshire S., Lambert J., O'Malley S., Kukanskis K., Zhu Z., Kingsmore S.F., Lizardi P.M., Ward D.C. Proc. Natl. Acad. Sci. 97:2000;10113.
43. Wiltshire S., O'Malley S., Lambert J., Kukanskis K., Edgar D., Kingsmore S.F., Schweitzer B. Clin. Chem. 46:2000;1990.
44. Collins M.L., Irvine B., Tyner D., Fine E., Zayati C., Chang C., Horn T., Ahle D., Detmer J., Shen L.-P., Kolberg J., Bushnell S., Urdea M.S., Jo D.H. Nucleic Acids Res. 25:1997;2979.
45. Patolsky F., Ranjit K.T., Lichtenstein A., Willner I. Chem. Commun. 12:2000;1025.
46. Patolsky F., Lichtenstein A., Willner I. Angew. Chem., Int. Ed. Engl. 39:2000;940.