Development of molecular and biochemical tools to investigate fruit quality traits in strawberry elite genotypes

Molecular Breeding

Volumn 18, Issue 2, 2006, Pages 127-142

  Carbone, Fabrizio ^a   Mourgues, Fabienne ^a   Biasioli, Franco ^b   Gasperi, Flavia ^b   Märk, Tilmann D ^c   Rosati, Carlo ^a   Perrotta, Gaetano ^a  

^a Trisaia Research Center   (Italy)

^b RESEARCH AND INNOVATION CENTRE   (Italy)

^c UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

Comparative gene expression profiling; Enzyme assays; Fruit quality; Functional Genomics; Proton Transfer Reaction Mass Spectrometry

Indexed keywords

BIOCHEMISTRY; MASS SPECTROMETRY; PROTON TRANSFER; TRANSCRIPTION; VOLATILE ORGANIC COMPOUNDS;

ALCOHOL ACYLTRANSFERASE; BIOCHEMICAL STUDIES; BIOCHEMICAL TOOLS; COMPARATIVE GENE EXPRESSION PROFILING; ENZYME ASSAYS; FRUIT QUALITY; FUNCTIONAL GENOMICS; GENE EXPRESSION PROFILING; MOLECULAR TOOLS; PROTON-TRANSFER REACTION MASS SPECTROMETRIES;

FRUITS;

FRAGARIA; FRAGARIA X ANANASSA;

EID: 33748449449     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-006-9017-2     Document Type: Article

References (55)

1. Aharoni A, O'Connell AP (2002) Gene expression analysis of strawberry achene and receptacle maturation using DNA microarrays. J Exp Bot 53:2073-2087
2. Aharoni A, Keizer LCP, Bouwmeester HJ, Sun Z, Alvarez-Huerta M, Verhoeven HA, Blaas J, van Houwelingen AMML, De Vos RCH, van der Voet H, Jansen RC, Guis M, Mol J, Davis RW, Schena M, van Tunen AJ, O'Connell AP (2000) Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays. Plant Cell 12:647-661
3. Aharoni A, Keizer LCP, Van Den Broeck HC, Blanco-Portales R, Munoz-Blanco J, Bois G, Smit P, De Vos RCH, O'Connell AP (2002) Novel insights into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climateric fruit. Plant Physiol 129:1019-1031
4. Anterola AM, Lewis NG (2002) Trends in lignin modification: a comprehensive analysis of the effects of genetic manipulations/mutations on lignification and vascular integrity. Phytochemistry 61:221-294
5. Azodanlou R, Darbellay C, Luisier JL, Villettaz JC, Amadò R (2003) Quality assessment of strawberries (Fragaria species). J Agric Food Chem 51:715-721
6. Benítez-Burraco A, Blanco-Portales R, Redondo-Nevado J, Bellido ML, Moyano E, Caballero J-L, Muñoz-Blanco J (2003) Cloning and characterization of two ripening-related strawberry (Fragaria x ananassa cv. Chandler) pectate lyase genes. J Exp Bot 54:633-645
7. Biasioli F, Gasperi F, Aprea E, Mott D, Boscaini E, Mayr D, Märk TD (2003) Coupling proton transfer reaction-mass spectrometry with linear discriminant analysis: a case study. J Agric Food Chem 51:7227-7233
8. Biasioli F, Gasperi F, Aprea E, Endrizzi I, Framondino V, Marini F Mott D, Märk TD (2006) Correlation of PTR-MS spectral fingerprints with sensory characterisation of flavour and odour profile of "Trentingrana" cheese. Food Qual Prefer 17:63-75
9. Blanco-Portales R, Medina-Escobar N, Lopez-Raez JA, Gonzalez-Reyes JA, Villalba JM, Moyano E, Caballero JL, Munoz-Blanco J (2002) Cloning, expression and immunolocalization pattern of a cinnamyl alcohol dehydrogenase gene from strawberry (Fragaria x ananassa cv. Chandler). J Exp Bot 53:1723-1734
10. Boelens MH (1996-1999) VCF (2000) Volatile compounds in food, qualitative and quantitative data, 7th edn. (1996),
11. Boelens MH (VCF (2000) Volatile compounds in food, qualitative and quantitative data, 7th edn. (Suppl 1 (1997),
12. Boelens MH (VCF (2000) Volatile compounds in food, qualitative and quantitative data, 7th edn. (Suppl 2 (1999), Huizen, BACIS
13. Boscaini E, Van Ruth S, Biasioli F, Gasperi F, Märk TD (2003) Gas chromatography-olfactometry (GC-O) and proton transfer reaction-mass spectrometry (PTR-MS) analysis of the flavor profile of Grana Padano, Parmigiano Reggiano, and Grana Trentino cheeses. J Agric Food Chem 51:1782-1790
14. Boschetti A, Biasioli F, van Opbergen M, Warneke C, Jordan A, Holzinger R, Prazeller P, Karl T, Hansel A, Lindinger W, Iannotta S (1999) PTR-MS real time monitoring of the emission of volatile organic compounds during postharvest aging of berryfruit. Postharvest Biol Technol 17:143-151
15. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72:248-254
16. Buhr K, van Ruth S, Delahunty C (2002) Analysis of volatile flavour compounds by Proton-Transfer Reaction-Mass Spectrometry: fragmentation patterns and discrimination between isobaric and isomeric compounds. Int J Mass Spectrom 221:1-7
17. Carbone F, Pizzichini D, Giuliano G, Rosati C, Perrotta G (2005) Comparative profiling of tomato fruits and leaves evidences a complex modulation of global transcript profiles. Plant Sci 169:165-175
18. Civello PM, Powell ALT, Sabehat A, Bennett AB (1999) An expansin gene expressed in ripening strawberry fruit. Plant Physiol 121:1273-1279
19. Cleveland W, Devlin S (1998) Locally weighted linear regression: an approach to regression analysis by local fitting. J Am Stat Assoc 83:596-609
20. Davis TM, Yu H (1997) A linkage map of the diploid strawberry, Fragaria vesca. J Hered 88:215-221
21. Dorfner R, Ferge T, Yeretzian C, Kettrup A, Zimmermann R (2004) Laser mass spectrometry as on-line sensor for industrial process analysis: process control of coffee roasting. Anal Chem 76:1386-1402
22. El-Sharkawy I, Manríquez D, Flores FB, Regad F, Bouzayen M, Latché A, Pech J-C (2005) Functional characterization of a melon alcohol acyl-transferase gene family involved in the biosynthesis of ester volatiles. Identification of the crucial role of a threonine residue for enzyme activity. Plant Mol Biol 59:345-362
23. Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ (2004) Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J 40:47-59
24. Fiehn O (2002) Metabolomics - the link between genotypes and phenotypes. Plant Mol Biol 48:155-171
25. Fonseca S, Hackler L Jr, Zvara A, Ferreira S, Baldé A, Dudits D, Pais MS, Puskás LG (2004) Monitoring gene expression along pear fruit development, ripening and senescence using cDNA microarrays. Plant Sci 167:457-469
26. Gasperi F, Gallerani G, Boschetti A, Biasioli F, Monetti A, Boscaini E, Jordan A, Lindinger W, Iannotta S (2001) The mozzarella cheese flavour profile: a comparison between judge panel analysis and proton transfer reaction mass spectrometry. J Sci Food Agric 81:357-363
27. Hansel A, Jordan A, Warneke C, Holzinger R, Wisthaler A, Lindinger W (1999) Proton-transfer-reaction mass spectrometry (PTR-MS): on-line monitoring of volatile organic compounds at volume mixing ratios of a few pptv. Plasma Sources Sci Technol 8:332-336
28. Lerceteau-Köhler E, Guerin G, Laigret F, Denoyes-Rothan B (2003) Characterization of mixed disomic and polysomic inheritance in the octoploid strawberry (Fragaria x ananassa) using AFLP mapping. Theor Appl Genet 107:619-628
29. Li D, Xu Y, Xu G, Gu L, Li D, Shu H (2006) Molecular cloning and expression of a gene encoding alcohol acyltransferase (MdAAT2) from apple (cv. Golden Delicious). Phytochemistry 67:658-667
30. Lindinger W, Hansel A, Jordan A (1998) On-line monitoring of volatile organic compounds at pptv level by means of Proton-Transfer-Reaction Mass Spectrometry (PTR-MS). Medical application, food control and environmental research. International Int J Mass Spectrom Ion Process 173:191-241
31. Lloup-Tous I, Domínguez-Puigjaner E, Palomer X, Vendrell M (1999) Characterization of two divergent endo-β-1,4-glucanase cDNA clones highly expressed in the nonclimacteric strawberry fruit. Plant Physiol 119:1415-1421
32. Lopez-Gomez R, Gomez-Lim MA (1992) A method for extracting intact RNA from fruit rich in polysaccharides using ripe mango mesocarp. HortScience 27:440-442
33. Manning K (1998) Isolation of a set of ripening-related genes from strawberry: their identification and possible relationship to fruit quality traits. Planta 205:622-631
34. Martínez GA, Chaves AR, Civello PM (2004) β-xylosidase activity and expression of a β-xylosidase gene during strawberry fruit ripening. Plant Physiol Biochem 42:89-96
35. Marty I, Douat C, Tichit L, Jungsup K, Leustek T, Albagnac G (2000) The cystathionine-β-synthase gene involved in methionine biosynthesis is highly expressed and auxin-repressed during wild strawberry (Fragaria vesca L.) fruit ripening. Theor Appl Genet 100:1129-1136
36. Medina-Escobar N, Cárdenas J, Moyano E, Caballero JL, Muñoz-Blanco J (1997) Cloning, molecular characterization and expression pattern of a strawberry ripening-specific cDNA with sequence homology to pectate lyase from higher plants. Plant Mol Biol 34:867-877
37. Ménager I, Jost M, Aubert C (2004) Changes in physicochemical characteristics and volatile constituents of strawberry (cv. Cigaline) during maturation. J Agric Food Chem 52:1248-1254
38. Mott D, Biasioli F, Gasperi F, Aprea E, Marini F, Märk TD (2004) Characterisation of strawberry genotypes by PTRMS spectral fingerprinting. Acta Horticult 649:65-68
39. Nam YW, Tichit L, Leperlier M, Cuerq B, Marty I, Lelièvre JM (1999) Isolation and characterization of mRNAs differentially expressed during ripening of wild strawberry (Fragaria vesca L.) fruits. Plant Mol Biol 39:629-636
40. Olías R, Perez AG, Sanz C (2002) Catalytic properties of alcohol acyltransferase in different strawberry species and cultivars. J Agricult Food Chem 50:4031-4036
41. Pérez AG, Sanz C, Olías JM (1993) Partial purification and some properties of alcohol acyltransferase from strawberry fruits. J Agric Food Chem 41:1462-1466
42. Pérez AG, Sanz C, Olías R, Ríos JJ, Olías JM (1996) Evolution of strawberry alcohol acyltransferase activity during fruit development and storage. J Agric Food Chem 44:3286-3290
43. Pérez AG, Olías R, Luaces P, Sanz C (2002) Biosynthesis of strawberry aroma compounds through amino acid metabolism. J Agric Food Chem 50:4037-4042
44. Rosli HG, Civello PM, Marti'nez GA (2004)Changes in cell wall composition of three Fragaria x ananassa cultivars with different softening rate during ripening. Plant Physiol Biochem 42:823-831
45. Salentijn EMJ, Aharoni A, Schaart JG, Boone MJ, Krens FA (2003) Differential gene expression analysis of strawberry cultivars that differ in fruit-firmness. Physiol Plant 118:571-578
46. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor, New York
47. Sargent DJ, Davis TM, Tobutt KR, Wilkinson MJ, Battey NH, Simpson DW (2004) A genetic linkage map of microsatellite, gene-specific and morphological markers in diploid Fragaria. Theor Appl Genet 109(7):1385-1391
48. Schadt EE, Monks SA, Drake TA, Lusisk AJ, Chek N, Colinayok V, Ruff TG, Milligan SB, Lamb JR, Cavet G, Linsley PS, Mao M, Stoughton RB, Friend SH (2003) Genetics of gene expression surveyed in maize, mouse and man. Nature 422:297-302
49. Trainotti L, Spinello R, Piovan A, Spolaore S, Casadoro G (2001) β-Galactosidases with a lectin-like domain are expressed in strawberry. J Exp Bot 52:1635-1645
50. Trainotti L, Zanin D, Casadoro G (2003) A cell wall-oriented genomic approach reveals a new and unexpected complexity of the softening in peaches. J Exp Bot 54:1821-1832
51. Trainotti L, Bonghi C, Ziliotto F, Zanin D, Rasori A, Casadoro G, Ramina A, Tonutti P (2006) The use of microarray to investigate transcriptome changes during transition from pre-climacteric to climacteric phase in peach fruit. Plant Sci 170:606-613
52. Tsuchikawa S, Hamada T (2004) Application of time-of-flight near infrared spectroscopy for detecting sugar and acid contents in apples. J Agric Food Chem 52:2434-2439
53. Waters DLE, Holton TA, Ablett EM, Lee LS, Henry RJ (2005) cDNA microarray analysis of developing grape (Vitis vinifera cv. Shiraz) berry skin. Funct Integr Genomics 5(1):40-58
54. Yamada K, Lim J, Dale JM, Chen H, Shinn P, Palm CJ, Southwick AM, Wu HC, Kim C, Nguyen M, Pham P, Cheuk R, Karlin-Newmann G, Liu SX, Lam B, Sakano H, Wu T, Yu G, Miranda M, Quach HL, Tripp M, Chang CH, Lee JM, Toriumi M, Chan MMH, Tang CC, Onodera CS, Deng JM, Akiyama K, Ansari Y, Arakawa T, Banh J, Banno F, Bowser L, Brooks S, Carninci P, Chao Q, Choy N, Enju A, Goldsmith AD, Gurjal M, Hansen NF, Hayashizaki Y, Johnson-Hopson C, Hsuan VW, Iida K, Karnes M, Khan S, Koesema E, Ishida J, Jiang PX, Jones T, Kawai J, Kamiya A, Meyers C, Nakajima M, Narusaka M, Seki M, Sakurai T, Satou M, Tamse R, Vaysberg M, Wallender EK, Wong C, Yamamura Y, Yuan S, Shinozaki K, Davis RW, Theologis A, Ecker JR (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302:842-846
55. Zini E, Biasioli F, Gasperi F, Mott D, Aprea E, Märk TD, Patocchi A, Gessler C, Komjanc M (2005) QTL mapping of volatile compounds in ripe apples detected by Proton Transfer Reaction-Mass Spectrometry. Euphytica 145:269-279