Comparative profiling of tomato fruits and leaves evidences a complex modulation of global transcript profiles

Plant Science

Volumn 169, Issue 1, 2005, Pages 165-175

  Carbone, Fabrizio ^a   Pizzichini, Daniele ^b   Giuliano, Giovanni ^b   Rosati, Carlo ^a   Perrotta, Gaetano ^a  

^a Trisaia Research Center   (Italy)

^b ENEA C R CASACCIA   (Italy)

Author keywords

Carotenoid biosynthesis; Light signalling genes; Microarray; Tomato fruit ripening

Indexed keywords

BIOSYNTHESIS; GENES; MOLECULAR DYNAMICS; PHOTOSENSITIVITY; PROTEINS;

FRUIT DEVELOPMENT; FRUIT MATURATION; MOLECULAR MECHANISMS; TOMATO FRUITS;

FRUITS;

BIOSYNTHESIS; FRUITS; GENES; LEAVES; PHOTOSENSITIVITY; PROTEINS; RIPENING; TOMATOES;

LYCOPERSICON ESCULENTUM;

EID: 19544371336     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2005.03.011     Document Type: Article

References (39)

1. M.J.C. Rhodes The maturation and ripening of fruits K.V. Thimann F.L. Boca Raton Senescence in Plants 1980 CRC Press 157 205
2. G.B. Seymour, J.E. Taylor, and G.A. Tucker Biochemistry of Fruit Ripening 1993 Chapman and Hall London, New York
3. J.M. Lelievre, A. Latche, B. Jones, M. Bouzayen, and J.C. Pech Ethylene and fruit ripening Physiol. Plant 101 1997 727 739
4. J. Giovannoni Molecular biology of fruit maturation and ripening Annu. Rev. Plant Physiol. Plant. Mol. Biol. 52 2001 725 749
5. L. Alexander, and D. Grierson Ethylene biosynthesis and action in tomato: a model for climacteric fruit ripening J. Exp. Bot. 53 2002 2039 2055
6. P.H. Gann, and F. Khachik Tomatoes or Lycopene versus prostate cancer: is evolution anti-reductionist? J. Nat. Cancer Inst. 95 2003 1563 1565
7. C. Somerville, and S. Somerville Plant functional genomics Science 285 1999 380 383
8. G.E. Bartley, and B.K. Ishida Digital fruit ripening: data mining in the tigr tomato gene index Plant Mol. Biol. Rep. 20 2002 115 130
9. M. Schena, D. Shalon, R.W. Davis, and P.O. Brown Quantitative monitoring of gene expression patterns with a complimentary DNA microarray Science 270 1995 467 470
10. S. Moore, J. Vrebalov, P. Payton, and J. Giovannoni Use of genomics tools to isolate key ripening genes and analyse fruit maturation in tomato J. Exp. Bot. 53 2002 2023 2030
11. Z. Fei, X. Tang, R.M. Alba, J.A. White, C.M. Ronning, G.B. Martin, S.D. Tanksley, and J.J. Giovannoni Comprehensive EST analysis of tomato and comparative genomics of fruit ripening Plant J. 40 2004 47 59
12. H. Smith Phytochromes and light signal perception by plants - an emerging synthesis Nature 407 2000 585 591
13. C. Lin, and D. Shalitin Cryptochrome structure and signal transduction Ann. Rev. Plant Biol. 54 2003 469 496
14. E. Liscum, D.W. Hodgson, and T.J. Campbell Blue light signalling through the cryptochromes and phototropins. so that's what the blues is all about Plant Physiol. 133 2003 1429 1436
15. P. Gyula, E. Schafer, and F. Nagy Light perception and signalling in higher plants Curr. Opin. Plant Biol. 6 2003 446 452
16. E.V. Wann, E.L. Jourdain, R. Pressey, and B.G. Lyon Effect of mutant genotypes hp ogc and dg ogc on tomato fruit quality J. Am. Soc. Hortic. Sci. 110 1985 212 215
17. L. Giliberto, G. Perrotta, P. Pallara, J.L. Weller, P.D. Fraser, P.M. Bramley, A. Fiore, M. Tavazza, and G. Giuliano Manipulation of the blue light photoreceptor Cryptochrome 2 in tomato affects vegetative development, flowering time, and fruit antioxidant content Plant Physiol. 137 2005 199 208
18. J. Sambrook, E.F. Fitsch, and T. Maniatis Molecular Cloning: A Laboratory Manual 1989 Cold Spring Harbor Press Cold Spring Harbor
19. R. Lopez-Gomez, and M.A. Gomez-Lim A method for extracting intact RNA from fruits rich in polysaccharides using ripe mango mesocarp Hort. Sci. 27 1992 440 442
20. W. Cleveland, and S. Devlin Locally weighted linear regression: an approach to regression analysis by local fitting J. Am. Stat. Assoc. 83 1988 596 609
21. W. Schwab, A. Aharoni, T. Raab, A. Garcia Perez, and C. Sanz Citosolic aldolase is a ripening related enzyme in strawberry fruits (Fragaria × ananassa) Phytochem 56 2001 407 415
22. C. Ingvardsen, and B. Veierskov Ubiquitin- and proteasome-dependent proteolysis in plants Physiol. Plant 112 2001 451 459
23. G. Giuliano, G.E. Bartley, and P.A. Scolnik Regulation of carotenoid biosynthesis during tomato development Plant Cell 5 1993 379 387
24. T. Isaacson, G. Ronen, D. Zamir, and J. Hirschberg Cloning of tangerine from tomato reveals a carotenoid isomerase essential for the production of beta-carotene and xanthophylls in plants Plant Cell 14 2002 333 342
25. J. Speirs, E. Lee, K. Holt, K. Yong-Duk, N.S. Scott, B. Loveys, and W. Schuch Genetic manipulation of alcohol dehydrogenase levels in ripening tomato fruit affects the balance of some flavor aldehydes and alcohols Plant Physiol. 117 1998 1047 1058
26. J. Gray, S. Picton, J. Shabbeer, W. Schuch, and D. Grierson Molecular biology of fruit ripening and its manipulation with antisense genes Plant Mol. Biol. 19 1992 69 87
27. S.B. Boggio, J.F. Palatnik, H.W. Heldt, and E.M. Valle Changes in amino acid composition and nitrogen metabolizing enzymes in ripening fruits of Lycopersicon esculentum Mill Plant Sci. 159 2000 125 133
28. R. Alba, L.M.M. Cordonnier-Pratt, and L.H. Pratt Fruit-localized phytochromes regulate lycopene accumulation independently of ethylene production in tomato Plant Physiol. 123 2000 363 370
29. G.E. Bartley, and P.A. Scolnik cDNA cloning, expression during development, and genome mapping of PSY2, a second tomato gene encoding phytoene synthase J. Biol. Chem. 268 1993 25718 25721
30. P.D. Fraser, J.W. Kiano, M.R. Truesdale, W. Schuch, and P.M. Bramley Phytoene synthase-2 enzyme activity in tomato does not contribute to carotenoid synthesis in ripening fruit Plant Mol. Biol. 40 1999 687 698
31. F. Bouvier, A. D'Harlingue, R. Backhous, M.H. Kumagai, and B. Camara Identification of neoxanthin synthase as a carotenoid cyclase paralog Eur. J. Biochem. 267 2000 6346 6352
32. G. Ronen, M. Cohen, D. Zamir, and J. Hirschberg Regulation of carotenoid biosynthesis during tomato fruit development: expression of the gene for lycopene epsilon-cyclase is down-regulated during ripening and is elevated in the mutant Delta Plant J. 17 1999 341 351
33. G. Ronen, L. Carmel-Goren, D. Zamir, and J. Hirschberg An alternative pathway to beta-carotene formation in plant chromoplasts discovered by map-based cloning of beta and old-gold color mutations in tomato Proc. Natl. Acad. Sci. 97 2000 11102 11107
34. I. Pecker, R. Gabbay, F.X. Cunningham, and J. Hirschberg Cloning and characterization of the cDNA for lycopene beta-cyclase from tomato reveals decrease in its expression during fruit ripening Plant Mol. Biol. 30 1996 807 819
35. Y. Liu, S. Roof, Z. Ye, C. Barry, A. van Tuinen, J. Vrebalov, C. Bowler, and J. Giovannoni Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomato Proc. Natl. Acad. Sci. USA 101 2004 9897 9902
36. B.A. Hauser, L.H. Pratt, and M.M. Cordonnier-Pratt Absolute quantification of five phytochrome transcripts in seedlings and mature plants of tomato (Solanum lycopersicum L.) Planta 201 1997 379 387
37. J.L. Weller, M.E. Schreuder, H. Smith, M. Koornneef, and R.E. Kendrick Physiological interactions of phytochromes A, B1 and B2 in the control of development in tomato Plant J. 24 2000 345 356
38. J. Yang, R. Lin, J. Sullivan, U. Hoecker, B. Liu, L. Xu, X.W. Deng, and H. Wang Light regulates COP1-mediated degradation of HFR1, a transcription factor essential for light signaling in arabidopsis Plant Cell 17 2005 804 821
39. G. Perrotta, G. Yahoubyan, E. Nebuloso, L. Renzi, and G. Giuliano Tomato and barley contain duplicated copies of cryptochrome 1 Plant Cell Environ. 24 2001 991 997