-
1
-
-
0033621165
-
Amyloid diseases: Abnormal protein aggregation in neurodegeneration
-
Koo EH, Lansbury PT, Jr, Kelly JW. Amyloid diseases: abnormal protein aggregation in neurodegeneration. Proc Natl Acad Sci USA 1999;96:9989,9990.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9989
-
-
Koo, E.H.1
Lansbury Jr., P.T.2
Kelly, J.W.3
-
2
-
-
0037174618
-
Alzheimer's disease is a synaptic failure
-
Selkoe DJ. Alzheimer's disease is a synaptic failure. Science 2002;298:789-791.
-
(2002)
Science
, vol.298
, pp. 789-791
-
-
Selkoe, D.J.1
-
3
-
-
0030822582
-
Prion diseases and the BSE crisis
-
Prusiner SB. Prion diseases and the BSE crisis. Science 1997;278: 245-251.
-
(1997)
Science
, vol.278
, pp. 245-251
-
-
Prusiner, S.B.1
-
4
-
-
20444440728
-
Structure of the cross-β spine of amyloid-like fibrils
-
Nelson R, Sawaya MR, Balbirnie M, Madsen AO, Riekel C, Grothe R, Eisenberg D. Structure of the cross-β spine of amyloid-like fibrils. Nature 2005;435:773-778.
-
(2005)
Nature
, vol.435
, pp. 773-778
-
-
Nelson, R.1
Sawaya, M.R.2
Balbirnie, M.3
Madsen, A.O.4
Riekel, C.5
Grothe, R.6
Eisenberg, D.7
-
5
-
-
12244249201
-
Self-propagating, molecular-level polymorphism in Alzheimer's β-amyloid fibrils
-
Petkova AT, Leapman RD, Guo Z, Yau WM, Mattson MP, Tycko R. Self-propagating, molecular-level polymorphism in Alzheimer's β-amyloid fibrils. Science 2005;307:262-265.
-
(2005)
Science
, vol.307
, pp. 262-265
-
-
Petkova, A.T.1
Leapman, R.D.2
Guo, Z.3
Yau, W.M.4
Mattson, M.P.5
Tycko, R.6
-
6
-
-
0037041420
-
Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases
-
Bucciantini M, Giannoni E, Chiti F, Baroni F, Formigli L, Zurdo J, Taddei N, Ramponi G, Dobson CM, Stefani M. Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases. Nature 2002;416:507-511.
-
(2002)
Nature
, vol.416
, pp. 507-511
-
-
Bucciantini, M.1
Giannoni, E.2
Chiti, F.3
Baroni, F.4
Formigli, L.5
Zurdo, J.6
Taddei, N.7
Ramponi, G.8
Dobson, C.M.9
Stefani, M.10
-
7
-
-
0242668337
-
Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis
-
Kayed R, Head E, Thompson JL, McIntire TM, Milton SC, Cotman CW, Glabe CG. Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis. Science 2003;300:486-489.
-
(2003)
Science
, vol.300
, pp. 486-489
-
-
Kayed, R.1
Head, E.2
Thompson, J.L.3
McIntire, T.M.4
Milton, S.C.5
Cotman, C.W.6
Glabe, C.G.7
-
8
-
-
16644379264
-
Natural oligomers of the amyloid-β protein specifically disrupt cognitive function
-
Cleary JP, Walsh DM, Hofmeister JJ, Shankar GM, Kuskowski MA, Selkoe DJ, Ashe KH. Natural oligomers of the amyloid-β protein specifically disrupt cognitive function. Nat Neurosci 2005;8:79-84.
-
(2005)
Nat Neurosci
, vol.8
, pp. 79-84
-
-
Cleary, J.P.1
Walsh, D.M.2
Hofmeister, J.J.3
Shankar, G.M.4
Kuskowski, M.A.5
Selkoe, D.J.6
Ashe, K.H.7
-
11
-
-
4143067019
-
Pauling and Corey's α-pleated sheet structure may define the prefibrillar amyloidogenic intermediate in amyloid disease
-
Armen RS, DeMarco ML, Alonso DO, Daggett V. Pauling and Corey's α-pleated sheet structure may define the prefibrillar amyloidogenic intermediate in amyloid disease. Proc Natl Acad Sci USA 2004;101:11622-11627.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11622-11627
-
-
Armen, R.S.1
DeMarco, M.L.2
Alonso, D.O.3
Daggett, V.4
-
13
-
-
11844291405
-
A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: A single β-sheet model with a small hydrophobic core
-
Haspel N, Zanuy D, Ma B, Wolfson H, Nussinov R. A comparative study of amyloid fibril formation by residues 15-19 of the human calcitonin hormone: a single β-sheet model with a small hydrophobic core. J Mol Biol 2005;345:1213-1227.
-
(2005)
J Mol Biol
, vol.345
, pp. 1213-1227
-
-
Haspel, N.1
Zanuy, D.2
Ma, B.3
Wolfson, H.4
Nussinov, R.5
-
14
-
-
22144432561
-
MD simulations indicate a possible role of parallel β-helices in seeded aggregation of poly-Gln
-
Stork M, Giese A, Kretzschmar HA, Tavan P. MD simulations indicate a possible role of parallel β-helices in seeded aggregation of poly-Gln. Biophys J 2005;88:2442-2451.
-
(2005)
Biophys J
, vol.88
, pp. 2442-2451
-
-
Stork, M.1
Giese, A.2
Kretzschmar, H.A.3
Tavan, P.4
-
15
-
-
11844255790
-
10-35- protein: Assessing the propensity for peptide dimerization
-
10-35-protein: assessing the propensity for peptide dimerization. J Mol Biol 2005;345:1141-1156.
-
(2005)
J Mol Biol
, vol.345
, pp. 1141-1156
-
-
Tarus, B.1
Straub, J.E.2
Thirumalai, D.3
-
16
-
-
19544375553
-
Sequence dependence of amyloid fibril formation: Insights from molecular dynamics simulations
-
Lopez de la Paz M, de Mori GM, Serrano L, Colombo G. Sequence dependence of amyloid fibril formation: insights from molecular dynamics simulations. J Mol Biol 2005;349: 583-596.
-
(2005)
J Mol Biol
, vol.349
, pp. 583-596
-
-
Lopez De La Paz, M.1
De Mori, G.M.2
Serrano, L.3
Colombo, G.4
-
17
-
-
17844362202
-
Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water
-
Colombo G, Daidone I, Gazit E, Amadei A, Di Nola A. Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water. Proteins 2005;59:519-527.
-
(2005)
Proteins
, vol.59
, pp. 519-527
-
-
Colombo, G.1
Daidone, I.2
Gazit, E.3
Amadei, A.4
Di Nola, A.5
-
18
-
-
15444364664
-
Stability of SIV gp32 fusion-peptide single-layer protofibrils as monitored by molecular-dynamics simulations
-
Soto P, Cladera J, Mark AE, Daura X. Stability of SIV gp32 fusion-peptide single-layer protofibrils as monitored by molecular-dynamics simulations. Angew Chem Int Ed Engl 2005;44:1065-1067.
-
(2005)
Angew Chem Int Ed Engl
, vol.44
, pp. 1065-1067
-
-
Soto, P.1
Cladera, J.2
Mark, A.E.3
Daura, X.4
-
19
-
-
20444363123
-
Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: Significant role of Asn ladder
-
Tsai HH, Reches M, Tsai CJ, Gunasekaran K, Gazit E, Nussinov R. Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder. Proc Natl Acad Sci USA 2005;102:8174-8179.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 8174-8179
-
-
Tsai, H.H.1
Reches, M.2
Tsai, C.J.3
Gunasekaran, K.4
Gazit, E.5
Nussinov, R.6
-
20
-
-
0037337271
-
16-22 amyloid peptides into antiparallel β sheets
-
16-22 amyloid peptides into antiparallel β sheets. Structure 2003;11: 295-307.
-
(2003)
Structure
, vol.11
, pp. 295-307
-
-
Klimov, D.K.1
Thirumalai, D.2
-
21
-
-
2942707921
-
Molecular dynamics studies of the process of amyloid aggregation of peptide fragments of transthyretin
-
Paci E, Gsponer J, Salvatella X, Vendruscolo M. Molecular dynamics studies of the process of amyloid aggregation of peptide fragments of transthyretin. J Mol Biol 2004;340:555-569.
-
(2004)
J Mol Biol
, vol.340
, pp. 555-569
-
-
Paci, E.1
Gsponer, J.2
Salvatella, X.3
Vendruscolo, M.4
-
22
-
-
22144448838
-
The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent
-
Wu C, Lei H, Duan Y. The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent. Biophys J 2005;88:2897-2906.
-
(2005)
Biophys J
, vol.88
, pp. 2897-2906
-
-
Wu, C.1
Lei, H.2
Duan, Y.3
-
23
-
-
0037627715
-
The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35
-
Gsponer J, Haberthur U, Caflisch A. The role of side-chain interactions in the early steps of aggregation: molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35. Proc Natl Acad Sci USA 2003;100:5154-5159.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 5154-5159
-
-
Gsponer, J.1
Haberthur, U.2
Caflisch, A.3
-
24
-
-
4444346811
-
Kinetic control of dimer structure formation in amyloid fibrillogenesis
-
Hwang W, Zhang S, Kamm RD, Karplus M. Kinetic control of dimer structure formation in amyloid fibrillogenesis. Proc Natl Acad Sci USA 2004;101:12916-12921.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12916-12921
-
-
Hwang, W.1
Zhang, S.2
Kamm, R.D.3
Karplus, M.4
-
25
-
-
9244260521
-
Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides
-
Nguyen ND, Hall CK. Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides. Proc Natl Acad Sci USA 2004;101:16180-16185.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 16180-16185
-
-
Nguyen, N.D.1
Hall, C.K.2
-
26
-
-
10644278760
-
In silico study of amyloid β-protein folding and oligomerization
-
Urbanc B, Cruz L, Yun S, Buldyrev SV, Bitan G, Teplow DB, Stanley HE. In silico study of amyloid β-protein folding and oligomerization. Proc Natl Acad Sci USA 2004;101:17345-17350.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17345-17350
-
-
Urbanc, B.1
Cruz, L.2
Yun, S.3
Buldyrev, S.V.4
Bitan, G.5
Teplow, D.B.6
Stanley, H.E.7
-
27
-
-
0037044732
-
Charge attraction and β propensity are necessary for amyloid fibril formation from tetrapeptides
-
Tjernberg L, Hosia W, Bark N, Thyberg J, Johansson J. Charge attraction and β propensity are necessary for amyloid fibril formation from tetrapeptides. J Biol Chem 2002;277:43243-43246.
-
(2002)
J Biol Chem
, vol.277
, pp. 43243-43246
-
-
Tjernberg, L.1
Hosia, W.2
Bark, N.3
Thyberg, J.4
Johansson, J.5
-
28
-
-
34548067360
-
Following the aggregation of amyloid-forming peptides by computer simulations
-
Melquiond A, Boucher G, Mousseau N, Derreumaux P. Following the aggregation of amyloid-forming peptides by computer simulations. J Chem Phys 2005;122:174904.
-
(2005)
J Chem Phys
, vol.122
, pp. 174904
-
-
Melquiond, A.1
Boucher, G.2
Mousseau, N.3
Derreumaux, P.4
-
29
-
-
10044289451
-
Sampling the self-assembly pathways of KFFE hexamers
-
Wei GH, Mousseau N, Derreumaux P. Sampling the self-assembly pathways of KFFE hexamers. Biophys J 2004;87:3648-3656.
-
(2004)
Biophys J
, vol.87
, pp. 3648-3656
-
-
Wei, G.H.1
Mousseau, N.2
Derreumaux, P.3
-
33
-
-
4043157260
-
Event-based relaxation of continuous disordered systems
-
Barkema GT, Mousseau N. Event-based relaxation of continuous disordered systems. Phys Rev Lett 1996;77:4358-4361.
-
(1996)
Phys Rev Lett
, vol.77
, pp. 4358-4361
-
-
Barkema, G.T.1
Mousseau, N.2
-
34
-
-
0034505723
-
Dynamics of Lennard-Jones clusters: A characterization of the activation-relaxation technique
-
Malek R, Mousseau N. Dynamics of Lennard-Jones clusters: a characterization of the activation-relaxation technique. Phys Rev E 2000;62:7723-7728.
-
(2000)
Phys Rev E
, vol.62
, pp. 7723-7728
-
-
Malek, R.1
Mousseau, N.2
-
35
-
-
3142737884
-
Complex folding pathways in a simple β-hairpin
-
Wei GH, Mousseau N, Derreumaux P. Complex folding pathways in a simple β-hairpin. Proteins 2004;56:464-474.
-
(2004)
Proteins
, vol.56
, pp. 464-474
-
-
Wei, G.H.1
Mousseau, N.2
Derreumaux, P.3
-
36
-
-
28844499140
-
Exploring the early steps of amyloid peptide aggregation by computers
-
Mousseau N, Derreumaux P. Exploring the early steps of amyloid peptide aggregation by computers. Acc Chem Res 2005;38: 885-891.
-
(2005)
Acc Chem Res
, vol.38
, pp. 885-891
-
-
Mousseau, N.1
Derreumaux, P.2
-
37
-
-
10044227276
-
16-22 peptides using hydrogen bonds and hydrophobicity forces
-
16-22 peptides using hydrogen bonds and hydrophobicity forces. Biophys J 2004;87:3657-3664.
-
(2004)
Biophys J
, vol.87
, pp. 3657-3664
-
-
Favrin, G.1
Irback, A.2
Mohanty, S.3
-
38
-
-
27744547951
-
Navigation and analysis of the energy landscape of small proteins using the activation-relaxation technique
-
Mousseau N, Derreumaux P, Gilbert G. Navigation and analysis of the energy landscape of small proteins using the activation-relaxation technique. Phys Biol 2005;2:S101-S107.
-
(2005)
Phys Biol
, vol.2
-
-
Mousseau, N.1
Derreumaux, P.2
Gilbert, G.3
-
39
-
-
0001418816
-
From polypeptide sequences to structures using Monte Carlo simulations and an optimized potential
-
Derreumaux P. From polypeptide sequences to structures using Monte Carlo simulations and an optimized potential. J Chem Phys 1999;111:2301-2310.
-
(1999)
J Chem Phys
, vol.111
, pp. 2301-2310
-
-
Derreumaux, P.1
-
40
-
-
0034214823
-
Generating ensemble averages for small proteins from extended conformations by Monte Carlo simulations
-
Derreumaux P. Generating ensemble averages for small proteins from extended conformations by Monte Carlo simulations. Phys Rev Lett 2000;85:206-209.
-
(2000)
Phys Rev Lett
, vol.85
, pp. 206-209
-
-
Derreumaux, P.1
-
41
-
-
0037103928
-
Role of supersecondary structural elements in protein G folding
-
Derreumaux P. Role of supersecondary structural elements in protein G folding. J Chem Phys 2002;117:3499-3503.
-
(2002)
J Chem Phys
, vol.117
, pp. 3499-3503
-
-
Derreumaux, P.1
-
42
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
46
-
-
25844456992
-
Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent
-
Wu C, Lei H, Duan Y. Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent. J Am Chem Soc 2005;127:13530-13537.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 13530-13537
-
-
Wu, C.1
Lei, H.2
Duan, Y.3
-
47
-
-
27744538230
-
Interplay between structure and size in a critical crystal nucleus
-
Moroni D, ten Wolde PR, Bolhuis PG. Interplay between structure and size in a critical crystal nucleus. Phys Rev Lett 2005;94: 235703.
-
(2005)
Phys Rev Lett
, vol.94
, pp. 235703
-
-
Moroni, D.1
Ten Wolde, P.R.2
Bolhuis, P.G.3
-
48
-
-
0037039394
-
Structure determination of micelle-like intermediates in amyloid β-protein fibril assembly by using small angle neutron scattering
-
Yong W, Lomakin A, Kirkitadze MD, Teplow DB, Chen SH, Benedek GB. Structure determination of micelle-like intermediates in amyloid β-protein fibril assembly by using small angle neutron scattering. Proc Natl Acad Sci USA 2002;99:150-154.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 150-154
-
-
Yong, W.1
Lomakin, A.2
Kirkitadze, M.D.3
Teplow, D.B.4
Chen, S.H.5
Benedek, G.B.6
-
49
-
-
0036415838
-
α-synuclein, especially the Parkinson's disease-associated mutants, forms pore-like annular and tubular protofibrils
-
Lashuel HA, Petre BM, Wall J, Simon M, Nowak RJ, Walz T, Lansbury PT, Jr. α-synuclein, especially the Parkinson's disease-associated mutants, forms pore-like annular and tubular protofibrils. J Mol Biol 2002;322:1089-1102.
-
(2002)
J Mol Biol
, vol.322
, pp. 1089-1102
-
-
Lashuel, H.A.1
Petre, B.M.2
Wall, J.3
Simon, M.4
Nowak, R.J.5
Walz, T.6
Lansbury Jr., P.T.7
-
50
-
-
0034714351
-
Nucleated conformational conversion and the replication of conformational information by a prion determinant
-
Serio TR, Cashikar AG, Kowal AS, Sawicki GJ, Moslehi JJ, Serpell L, Arnsdorf MF, Lindquist SL. Nucleated conformational conversion and the replication of conformational information by a prion determinant. Science 2000;289:1317-1321.
-
(2000)
Science
, vol.289
, pp. 1317-1321
-
-
Serio, T.R.1
Cashikar, A.G.2
Kowal, A.S.3
Sawicki, G.J.4
Moslehi, J.J.5
Serpell, L.6
Arnsdorf, M.F.7
Lindquist, S.L.8
|