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Volumn 40, Issue 3, 2006, Pages 808-829

Attributes and congruence of three molecular data sets: Inferring phylogenies among Septoria-related species from woody perennial plants

Author keywords

Anamorph; Bayesian inference; Data combination; Host parasite co evolution; Maximum parsimony; Mycosphaerella; Septoria; Teleomorph

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA; TUBULIN;

EID: 33746766901     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.03.029     Document Type: Article
Times cited : (28)

References (112)
  • 1
    • 33746664127 scopus 로고    scopus 로고
    • Andrianova, T.V., Minter, D.W., 2004. Septoria cornicola: description of pathogenic fungi and bacteria No. 1583. Commonw. Mycol. Inst. Kew, England.
  • 2
    • 0031371067 scopus 로고    scopus 로고
    • Multiple sources of character information and the phylogeny of Hawaiian drosophilids
    • Baker R.H., and DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46 (1997) 654-673
    • (1997) Syst. Biol. , vol.46 , pp. 654-673
    • Baker, R.H.1    DeSalle, R.2
  • 3
    • 0032088099 scopus 로고    scopus 로고
    • Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees
    • Baker R.H., Yu X., and DeSalle R. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Mol. Phylogenet. Evol. 9 (1998) 427-436
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 427-436
    • Baker, R.H.1    Yu, X.2    DeSalle, R.3
  • 4
    • 0035527385 scopus 로고    scopus 로고
    • Phylogenetic utility of different type of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae)
    • Baker R.H., Wilkinson G.S., and DeSalle R. Phylogenetic utility of different type of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae). Syst. Biol. 50 (2001) 87-105
    • (2001) Syst. Biol. , vol.50 , pp. 87-105
    • Baker, R.H.1    Wilkinson, G.S.2    DeSalle, R.3
  • 5
    • 20144389330 scopus 로고    scopus 로고
    • Multigene phylogenies reveal that red band needle blight of Pinus is caused by two distinct species of Dothistroma, D. septosporum and D. pini
    • Barnes I., Crous P.W., Wingfield B.D., and Wingfield M.J. Multigene phylogenies reveal that red band needle blight of Pinus is caused by two distinct species of Dothistroma, D. septosporum and D. pini. Stud. Mycol. 50 (2004) 551-565
    • (2004) Stud. Mycol. , vol.50 , pp. 551-565
    • Barnes, I.1    Crous, P.W.2    Wingfield, B.D.3    Wingfield, M.J.4
  • 6
    • 0033860303 scopus 로고    scopus 로고
    • Bias in phylogenetic reconstruction of Vertebrate Rhodopsin sequences
    • Belinda S., Chang W., and Campbell D.L. Bias in phylogenetic reconstruction of Vertebrate Rhodopsin sequences. Mol. Biol. Evol. 17 (2000) 1220-1231
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1220-1231
    • Belinda, S.1    Chang, W.2    Campbell, D.L.3
  • 7
    • 0005799991 scopus 로고
    • Septoria canker of introduced and native hybrid poplars
    • Bier J.E. Septoria canker of introduced and native hybrid poplars. Can. J. Res. 17 (1939) 195-204
    • (1939) Can. J. Res. , vol.17 , pp. 195-204
    • Bier, J.E.1
  • 8
    • 43949160320 scopus 로고
    • Branch support and tree stability
    • Bremer K. Branch support and tree stability. Cladistics 10 (1994) 295-304
    • (1994) Cladistics , vol.10 , pp. 295-304
    • Bremer, K.1
  • 9
    • 0026675038 scopus 로고
    • Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms
    • Bruns T.D., and Szaro T.M. Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms. Mol. Biol. Evol. 9 (1992) 836-855
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 836-855
    • Bruns, T.D.1    Szaro, T.M.2
  • 10
    • 0036005521 scopus 로고    scopus 로고
    • Combined data, Bayesian phylogenetics, and the origin of the New Zealand Cicada genera
    • Buckley T.R., Arensburger P., Simon C., and Chambers G.K. Combined data, Bayesian phylogenetics, and the origin of the New Zealand Cicada genera. Syst. Biol. 51 (2002) 4-18
    • (2002) Syst. Biol. , vol.51 , pp. 4-18
    • Buckley, T.R.1    Arensburger, P.2    Simon, C.3    Chambers, G.K.4
  • 12
    • 0034401795 scopus 로고    scopus 로고
    • The philosophy and practicalities of amalgamating anamorph and teleomorph concepts
    • Cannon P.F., and Kirk P.M. The philosophy and practicalities of amalgamating anamorph and teleomorph concepts. Stud. Mycol. 45 (2000) 19-25
    • (2000) Stud. Mycol. , vol.45 , pp. 19-25
    • Cannon, P.F.1    Kirk, P.M.2
  • 13
    • 12044252488 scopus 로고
    • Compositionnal bias, character-state bias, and character-state reconstruction using parsimony
    • Collins T.M., Wimberger P.H., and Naylor G.P. Compositionnal bias, character-state bias, and character-state reconstruction using parsimony. Syst. Biol. 43 (1994) 482-496
    • (1994) Syst. Biol. , vol.43 , pp. 482-496
    • Collins, T.M.1    Wimberger, P.H.2    Naylor, G.P.3
  • 14
    • 0000976999 scopus 로고
    • Taxonomic revision of Septoria-like fungi parasitic on Betulaceae
    • Constantinescu O. Taxonomic revision of Septoria-like fungi parasitic on Betulaceae. Trans. Brit. Mycol. Soc. 83 (1984) 383-398
    • (1984) Trans. Brit. Mycol. Soc. , vol.83 , pp. 383-398
    • Constantinescu, O.1
  • 15
    • 0043074683 scopus 로고    scopus 로고
    • Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the asian pit viper genus, Trimeresurus: separate, simultaneous, and conditional data combination analyses
    • Creer S., Malhotra A., and Thorpe R.S. Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the asian pit viper genus, Trimeresurus: separate, simultaneous, and conditional data combination analyses. Mol. Biol. Evol. 20 (2003) 1240-1251
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1240-1251
    • Creer, S.1    Malhotra, A.2    Thorpe, R.S.3
  • 16
    • 33746748678 scopus 로고    scopus 로고
    • Hosts, species and genotypes: opinions versus data
    • Crous P.W., and Groenewald J.Z. Hosts, species and genotypes: opinions versus data. Austral. Plant Pathol. 34 (2005) 1-8
    • (2005) Austral. Plant Pathol. , vol.34 , pp. 1-8
    • Crous, P.W.1    Groenewald, J.Z.2
  • 18
    • 0035030311 scopus 로고    scopus 로고
    • ITS rDNA phylogeny of selected Mycosphaerella species and their anamorphs occurring on Myrtaceae
    • Crous P.W., Hong L., Wingfield B.D., and Wingfield M.J. ITS rDNA phylogeny of selected Mycosphaerella species and their anamorphs occurring on Myrtaceae. Mycol. Res. 105 (2001) 425-431
    • (2001) Mycol. Res. , vol.105 , pp. 425-431
    • Crous, P.W.1    Hong, L.2    Wingfield, B.D.3    Wingfield, M.J.4
  • 19
    • 0035502624 scopus 로고    scopus 로고
    • A phylogenetic redefinition of anamorph genera in Mycosphaerella based on ITS rDNA sequences and morphology
    • Crous P.W., Kang J.-C., and Braun U. A phylogenetic redefinition of anamorph genera in Mycosphaerella based on ITS rDNA sequences and morphology. Mycologia 93 (2001) 1081-1101
    • (2001) Mycologia , vol.93 , pp. 1081-1101
    • Crous, P.W.1    Kang, J.-C.2    Braun, U.3
  • 20
    • 20144386739 scopus 로고    scopus 로고
    • Cryptic speciation and host specificity among Mycosphaerella spp. occurring on Australian Acacia species grown as exotics in the tropics
    • Crous P.W., Groenewald J.Z., Pongpanich K., Himaman W., Arzanlou M., and Wingfield M.J. Cryptic speciation and host specificity among Mycosphaerella spp. occurring on Australian Acacia species grown as exotics in the tropics. Stud. Mycol. 50 (2004) 457-469
    • (2004) Stud. Mycol. , vol.50 , pp. 457-469
    • Crous, P.W.1    Groenewald, J.Z.2    Pongpanich, K.3    Himaman, W.4    Arzanlou, M.5    Wingfield, M.J.6
  • 21
    • 0024634689 scopus 로고
    • DNA sequence, structure, and phylogenetic relationship of the small subunit rRNA coding region of mitochondrial DNA from Podospora anserina
    • Cummings D.J., Domenico J.M., Nelson J., and Sogin M.L. DNA sequence, structure, and phylogenetic relationship of the small subunit rRNA coding region of mitochondrial DNA from Podospora anserina. J. Mol. Evol. 28 (1989) 232-241
    • (1989) J. Mol. Evol. , vol.28 , pp. 232-241
    • Cummings, D.J.1    Domenico, J.M.2    Nelson, J.3    Sogin, M.L.4
  • 22
    • 0030816742 scopus 로고    scopus 로고
    • Can three incongruence tests predict when data should be combined?
    • Cunningham C.W. Can three incongruence tests predict when data should be combined?. Mol. Biol. Evol. 14 (1997) 733-740
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 733-740
    • Cunningham, C.W.1
  • 23
    • 0000886475 scopus 로고
    • New species of Pseudocercospora and Mycovellosiella, and new combinations into Pseudocercospora and Phaeoramularia
    • Deighton F.C. New species of Pseudocercospora and Mycovellosiella, and new combinations into Pseudocercospora and Phaeoramularia. Trans. Brit. Mycol. Soc. 88 (1987) 365-391
    • (1987) Trans. Brit. Mycol. Soc. , vol.88 , pp. 365-391
    • Deighton, F.C.1
  • 24
    • 0034952973 scopus 로고    scopus 로고
    • Phylogenetic relationships among Neofabraea species causing tree cankers and bull's-eye rot of apple based on DNA sequencing of ITS nuclear rDNA, mitochondrial rDNA, and the β-tubulin gene
    • de Jong S.N., Lévesque C.A., Verkley G.J.M., Abeln E.C.A., Rahe J.E., and Braun P.G. Phylogenetic relationships among Neofabraea species causing tree cankers and bull's-eye rot of apple based on DNA sequencing of ITS nuclear rDNA, mitochondrial rDNA, and the β-tubulin gene. Mycol. Res. 105 (2001) 658-669
    • (2001) Mycol. Res. , vol.105 , pp. 658-669
    • de Jong, S.N.1    Lévesque, C.A.2    Verkley, G.J.M.3    Abeln, E.C.A.4    Rahe, J.E.5    Braun, P.G.6
  • 25
    • 0006355723 scopus 로고
    • Fungi pathogenic to blueberries in the eastern United States
    • Demaree J.B., and Wilcox M.S. Fungi pathogenic to blueberries in the eastern United States. Phytopathology 37 (1947) 487-506
    • (1947) Phytopathology , vol.37 , pp. 487-506
    • Demaree, J.B.1    Wilcox, M.S.2
  • 26
    • 0034512402 scopus 로고    scopus 로고
    • Noise and incongruence: interpreting results of the incongruence length difference test
    • Dolphin K., Belshaw R., Orme C.D.L., and Quicke D.L.J. Noise and incongruence: interpreting results of the incongruence length difference test. Mol. Phylogenet. Evol. 17 (2000) 401-406
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 401-406
    • Dolphin, K.1    Belshaw, R.2    Orme, C.D.L.3    Quicke, D.L.J.4
  • 27
    • 0000989175 scopus 로고
    • Gene trees and species trees: molecular systematics as one-character taxonomy
    • Doyle J.J. Gene trees and species trees: molecular systematics as one-character taxonomy. Syst. Bot. 17 (1992) 144-163
    • (1992) Syst. Bot. , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 29
    • 0242487486 scopus 로고    scopus 로고
    • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    • Erixon P., Svennblad B., Britton T., and Oxelman B. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 52 (2003) 665-673
    • (2003) Syst. Biol. , vol.52 , pp. 665-673
    • Erixon, P.1    Svennblad, B.2    Britton, T.3    Oxelman, B.4
  • 30
    • 0347553483 scopus 로고
    • Septoria species on Cornus
    • Farr D.F. Septoria species on Cornus. Mycologia 83 (1991) 611-623
    • (1991) Mycologia , vol.83 , pp. 611-623
    • Farr, D.F.1
  • 33
  • 34
    • 25144519684 scopus 로고    scopus 로고
    • Specific and sensitive PCR-based detection of Septoria musiva, S. populicola and S. populi, the causes of leaf spot and stem canker on poplars
    • Feau N., Weiland J.E., Stanosz G.R., and Bernier L. Specific and sensitive PCR-based detection of Septoria musiva, S. populicola and S. populi, the causes of leaf spot and stem canker on poplars. Mycol. Res. 109 (2005) 1015-1028
    • (2005) Mycol. Res. , vol.109 , pp. 1015-1028
    • Feau, N.1    Weiland, J.E.2    Stanosz, G.R.3    Bernier, L.4
  • 35
    • 1542614587 scopus 로고    scopus 로고
    • Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta)
    • Gontcharov A.A., Marin B., and Melkonin M. Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta). Mol. Biol. Evol. 21 (2004) 612-624
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 612-624
    • Gontcharov, A.A.1    Marin, B.2    Melkonin, M.3
  • 36
    • 0035453450 scopus 로고    scopus 로고
    • Phylogenetic analyses of the ITS region of ribosomal DNA reveal that Septoria passerinii from barley is closely related to the wheat pathogen Mycosphaerella graminicola
    • Goodwin S.B., and Zismann V.L. Phylogenetic analyses of the ITS region of ribosomal DNA reveal that Septoria passerinii from barley is closely related to the wheat pathogen Mycosphaerella graminicola. Mycologia 93 (2001) 934-946
    • (2001) Mycologia , vol.93 , pp. 934-946
    • Goodwin, S.B.1    Zismann, V.L.2
  • 37
    • 0034915097 scopus 로고    scopus 로고
    • Phylogenetic analysis of Cercospora and Mycosphaerella based on the internal transcribed spacer region of ribosomal DNA
    • Goodwin S.B., Dunkle L.D., and Zismann V.L. Phylogenetic analysis of Cercospora and Mycosphaerella based on the internal transcribed spacer region of ribosomal DNA. Phytopathology 91 (2001) 648-658
    • (2001) Phytopathology , vol.91 , pp. 648-658
    • Goodwin, S.B.1    Dunkle, L.D.2    Zismann, V.L.3
  • 38
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 39
    • 19544378720 scopus 로고    scopus 로고
    • Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, beta-tubulin, and LSU rDNA
    • Hansen K., Lobuglio K.F., and Pfister D.H. Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, beta-tubulin, and LSU rDNA. Mol. Phylogenet. Evol. 36 (2005) 1-23
    • (2005) Mol. Phylogenet. Evol. , vol.36 , pp. 1-23
    • Hansen, K.1    Lobuglio, K.F.2    Pfister, D.H.3
  • 40
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis D.M. Inferring complex phylogenies. Nature 383 (1996) 130-131
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 41
    • 0000704795 scopus 로고    scopus 로고
    • Applications of molecular systematics
    • Hillis D.M., Moritz C., and Mable B.K. (Eds), Sinauer Associates, Sunderland, Massachusetts
    • Hillis D.M., Mable B.K., and Moritz C. Applications of molecular systematics. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular systematics. second ed. (1996), Sinauer Associates, Sunderland, Massachusetts 407-514
    • (1996) Molecular systematics. second ed. , pp. 407-514
    • Hillis, D.M.1    Mable, B.K.2    Moritz, C.3
  • 42
    • 1642356002 scopus 로고    scopus 로고
    • Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test
    • Hipp A.L., Hall J.C., and Sytsma K.J. Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test. Syst. Biol. 53 (2004) 81-89
    • (2004) Syst. Biol. , vol.53 , pp. 81-89
    • Hipp, A.L.1    Hall, J.C.2    Sytsma, K.J.3
  • 43
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: traditional and Bayesian approaches
    • Holder M., and Lewis P.O. Phylogeny estimation: traditional and Bayesian approaches. Nat. Rev. Genet. 4 (2003) 275-284
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 44
    • 33746734795 scopus 로고    scopus 로고
    • Holliday, P., Punithalingam, E., 1970. Septoria helianthi: description of pathogenic fungi and bacteria No. 276. Commonw. Mycol. Inst. Kew, England.
  • 46
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • Huelsenbeck J.P., Larget B., Miller R.E., and Ronquist F. Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51 (2002) 673-688
    • (2002) Syst. Biol. , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 47
    • 33746746360 scopus 로고    scopus 로고
    • Mycosphaerella speckle
    • Jones D.R. (Ed), CABI Publishing., Wallingford, UK
    • Jones D.R. Mycosphaerella speckle. In: Jones D.R. (Ed). Diseases of Banana (2000), CABI Publishing., Wallingford, UK 113-116
    • (2000) Diseases of Banana , pp. 113-116
    • Jones, D.R.1
  • 48
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro H.N. (Ed), Academic Press, New York
    • Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian Protein Metabolism (1969), Academic Press, New York 21-132
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 49
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 50
    • 33746668617 scopus 로고    scopus 로고
    • Kirk, P.M., 1982. Cercospora beticola: description of pathogenic fungi and bacteria No. 721. Commonw. Mycol. Inst. Kew, England.
  • 51
    • 84959806898 scopus 로고
    • A concern for evidence and phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    • Kludge A.G. A concern for evidence and phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38 (1989) 7-25
    • (1989) Syst. Zool. , vol.38 , pp. 7-25
    • Kludge, A.G.1
  • 52
    • 0242507502 scopus 로고    scopus 로고
    • Type I STS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora)
    • Koepfli K.-P., and Wayne R.K. Type I STS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia: Carnivora). Syst. Biol. 52 (2003) 571-593
    • (2003) Syst. Biol. , vol.52 , pp. 571-593
    • Koepfli, K.-P.1    Wayne, R.K.2
  • 53
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: molecular evolutionary genetics analysis software
    • Kumar S., Tamura K., Jakobsen I.B., and Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17 (2001) 1244-1245
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 54
    • 0018850985 scopus 로고
    • A simple, rapid, and sensitive DNA assay procedure
    • Labarca C., and Paigen K. A simple, rapid, and sensitive DNA assay procedure. Anal. Biochem. 102 (1980) 344-352
    • (1980) Anal. Biochem. , vol.102 , pp. 344-352
    • Labarca, C.1    Paigen, K.2
  • 55
    • 0035065311 scopus 로고    scopus 로고
    • Uninformative characters and apparent conflict between molecules and morphology
    • Lee M.S.Y. Uninformative characters and apparent conflict between molecules and morphology. Mol. Biol. Evol. 18 (2001) 676-680
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 676-680
    • Lee, M.S.Y.1
  • 56
    • 0027995404 scopus 로고
    • PCR primers that allow intergeneric differentiation of ascomycetes and their application to Verticillium spp
    • Li K., Rouse D.I., and German T.L. PCR primers that allow intergeneric differentiation of ascomycetes and their application to Verticillium spp. Appl. Environ. Microbiol. 60 (1994) 4324-4331
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 4324-4331
    • Li, K.1    Rouse, D.I.2    German, T.L.3
  • 57
    • 2442553913 scopus 로고    scopus 로고
    • Supraordinal phylogenetic relationships of Lecanoromycetes based on a Bayesian analysis of combined nuclear and mitochondrial sequences
    • Lumbsch H.T., Schmitt I., Palice Z., Wiklund E., Ekman S., and Wedin M. Supraordinal phylogenetic relationships of Lecanoromycetes based on a Bayesian analysis of combined nuclear and mitochondrial sequences. Mol. Phylogenet. Evol. 31 (2004) 822-832
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 822-832
    • Lumbsch, H.T.1    Schmitt, I.2    Palice, Z.3    Wiklund, E.4    Ekman, S.5    Wedin, M.6
  • 58
    • 0033911744 scopus 로고    scopus 로고
    • Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales)
    • Moncalvo J.M., Drehmel D., and Vilgalys R. Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales). Mol. Phylogenet. Evol. 16 (2000) 48-63
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 48-63
    • Moncalvo, J.M.1    Drehmel, D.2    Vilgalys, R.3
  • 59
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees
    • Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49 (1995) 718-726
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 60
    • 33746750588 scopus 로고    scopus 로고
    • Mulder, J.L., Holliday, P., 1974a. Mycosphaerella arachidis: description of pathogenic fungi and bacteria No. 411. Commonw. Mycol. Inst. Kew, England.
  • 61
    • 33746721382 scopus 로고    scopus 로고
    • Mulder, J.L., Holliday, P., 1974b. Mycosphaerella fijiensis: description of pathogenic fungi and bacteria No. 413. Commonw. Mycol. Inst. Kew, England.
  • 62
    • 33746760335 scopus 로고    scopus 로고
    • Mulder, J.L., Holliday, P., 1974c. Mycosphaerella musicola: description of pathogenic fungi and bacteria No. 414. Commonw. Mycol. Inst. Kew, England.
  • 63
    • 33746709893 scopus 로고    scopus 로고
    • Mulder, J.L., Holliday, P., 1974d. Cercospora coffeicola: description of pathogenic fungi and bacteria No. 415. Commonw. Mycol. Inst. Kew, England.
  • 64
    • 33746752015 scopus 로고
    • Septoria leaf spot on dogwoods
    • Neely D., and Nolte D.S. Septoria leaf spot on dogwoods. J. Arboricult. 15 (1989) 263-267
    • (1989) J. Arboricult. , vol.15 , pp. 263-267
    • Neely, D.1    Nolte, D.S.2
  • 65
    • 0032514671 scopus 로고    scopus 로고
    • The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small
    • Nei M., Kumar S., and Takahashi K. The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small. Proc. Nat. Acad. Sci. USA 95 (1998) 12390-12397
    • (1998) Proc. Nat. Acad. Sci. USA , vol.95 , pp. 12390-12397
    • Nei, M.1    Kumar, S.2    Takahashi, K.3
  • 66
    • 0006423145 scopus 로고    scopus 로고
    • Poplar diseases
    • Dickman D.I., Isebrands J.G., Eckenwalder J.E., and Richardson J. (Eds), NRC Research Press, National Research Council of Canada, Ontario
    • Newcombe G., Ostry M.E., Hubbes M., Périnet P., and Mottet M.J. Poplar diseases. In: Dickman D.I., Isebrands J.G., Eckenwalder J.E., and Richardson J. (Eds). Poplar culture in North America (2001), NRC Research Press, National Research Council of Canada, Ontario 249-276
    • (2001) Poplar culture in North America , pp. 249-276
    • Newcombe, G.1    Ostry, M.E.2    Hubbes, M.3    Périnet, P.4    Mottet, M.J.5
  • 67
    • 0033638953 scopus 로고    scopus 로고
    • Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants
    • Nickrent D.L., Parkinson C.L., Palmer J.D., and Duff R.J. Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Mol. Biol. Evol. 17 (2000) 1885-1895
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1885-1895
    • Nickrent, D.L.1    Parkinson, C.L.2    Palmer, J.D.3    Duff, R.J.4
  • 68
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: a novel method for fast and accurate multiple sequence alignment
    • Notredame C., Higgins D.G., and Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302 (2000) 205-217
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 70
    • 4344581910 scopus 로고
    • Needle cast of European larch caused by Mycosphaerella laricina in Wisconsin and Iowa
    • Patton R.F., and Spear R.N. Needle cast of European larch caused by Mycosphaerella laricina in Wisconsin and Iowa. Plant Dis. 67 (1983) 1149-1153
    • (1983) Plant Dis. , vol.67 , pp. 1149-1153
    • Patton, R.F.1    Spear, R.N.2
  • 72
    • 33746754041 scopus 로고    scopus 로고
    • Punithalingam, E., Holliday, P., 1972. Septoria glycines: description of pathogenic fungi and bacteria No. 339. Commonw. Mycol. Inst. Kew, England.
  • 73
    • 0036900111 scopus 로고    scopus 로고
    • Combining multiple data sets in a likelihood analysis: which models are the best ?
    • Pupko T., Huchon D., Cao Y., Okada N., and Hasegawa M. Combining multiple data sets in a likelihood analysis: which models are the best ?. Mol. Biol. Evol. 19 (2002) 2294-2307
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2294-2307
    • Pupko, T.1    Huchon, D.2    Cao, Y.3    Okada, N.4    Hasegawa, M.5
  • 74
    • 3843090640 scopus 로고    scopus 로고
    • Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on lichen-forming Acarosporaceae and evolution of polyspory
    • Reeb V., Lutzoni F., and Roux C. Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on lichen-forming Acarosporaceae and evolution of polyspory. Mol. Phylogenet. Evol. 32 (2004) 1036-1060
    • (2004) Mol. Phylogenet. Evol. , vol.32 , pp. 1036-1060
    • Reeb, V.1    Lutzoni, F.2    Roux, C.3
  • 75
    • 0036355308 scopus 로고    scopus 로고
    • A Maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies
    • Rokas A., Nylander J.A.A., Ronquist F., and Stone G.N. A Maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies. Mol. Phylogenet. Evol. 22 (2002) 206-219
    • (2002) Mol. Phylogenet. Evol. , vol.22 , pp. 206-219
    • Rokas, A.1    Nylander, J.A.A.2    Ronquist, F.3    Stone, G.N.4
  • 76
    • 4344648036 scopus 로고    scopus 로고
    • Bayesian inference of character evolution
    • Ronquist F. Bayesian inference of character evolution. Trends Ecol. Evol. 19 (2004) 475-481
    • (2004) Trends Ecol. Evol. , vol.19 , pp. 475-481
    • Ronquist, F.1
  • 77
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 78
    • 0037387372 scopus 로고    scopus 로고
    • Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inferences
    • Rosenberg M.S., and Kumar S. Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inferences. Mol. Biol. Evol. 20 (2003) 610-621
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 610-621
    • Rosenberg, M.S.1    Kumar, S.2
  • 79
    • 33746712790 scopus 로고    scopus 로고
    • Saccardo, P.A., 1882. Sylloge fungorum omnium hucusque cognitorum/digessit Saccardo, P.A. Vol. 3. Sumptibus Auctoris, Patavii.
  • 80
    • 0030733827 scopus 로고    scopus 로고
    • Congruence and consensus in the cotton tribe (Malvaceae)
    • Seelanan T.A., Schnabel T.A., and Wendel J.F. Congruence and consensus in the cotton tribe (Malvaceae). Syst. Bot. 22 (1997) 259-290
    • (1997) Syst. Bot. , vol.22 , pp. 259-290
    • Seelanan, T.A.1    Schnabel, T.A.2    Wendel, J.F.3
  • 81
    • 0034401502 scopus 로고    scopus 로고
    • How should we look at anamorphs ?
    • Seifert K.A., and Samuels G.J. How should we look at anamorphs ?. Stud. Mycol. 45 (2000) 5-18
    • (2000) Stud. Mycol. , vol.45 , pp. 5-18
    • Seifert, K.A.1    Samuels, G.J.2
  • 82
    • 0036375698 scopus 로고    scopus 로고
    • Amino acid vs. nucleotide characters: challenging preconceived notions
    • Simmons M.P., Ochoterana H., and Freudenstein J.V. Amino acid vs. nucleotide characters: challenging preconceived notions. Mol. Phylogenet. Evol. 24 (2002) 78-90
    • (2002) Mol. Phylogenet. Evol. , vol.24 , pp. 78-90
    • Simmons, M.P.1    Ochoterana, H.2    Freudenstein, J.V.3
  • 83
    • 1242352069 scopus 로고    scopus 로고
    • How meaningful are Bayesian support values?
    • Simmons M.P., Pickett K.M., and Miya M. How meaningful are Bayesian support values?. Mol. Biol. Evol. 21 (2004) 188-199
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 188-199
    • Simmons, M.P.1    Pickett, K.M.2    Miya, M.3
  • 84
    • 33746743642 scopus 로고    scopus 로고
    • Sivanesan, A., 1990a. Mycosphaerella populi: description of pathogenic fungi and bacteria No. 987. Commonw. Mycol. Inst. Kew, England.
  • 85
    • 33746780574 scopus 로고    scopus 로고
    • Sivanesan, A., 1990b. Mycosphaerella populorum: description of pathogenic fungi and bacteria No. 988. Commonw. Mycol. Inst. Kew, England.
  • 86
    • 33746773563 scopus 로고    scopus 로고
    • Sivanesan, A., 1990c. Mycosphaerella graminicola: description of pathogenic fungi and bacteria No. 986. Commonw. Mycol. Inst. Kew, England.
  • 87
    • 0033504484 scopus 로고    scopus 로고
    • Phylogenetic relationships among some cercosporoid anamorphs of Mycosphaerella based on rDNA sequence analysis
    • Stewart E.L., Liu Z., Crous P.W., and Szabo L.J. Phylogenetic relationships among some cercosporoid anamorphs of Mycosphaerella based on rDNA sequence analysis. Mycol. Res. 103 (1999) 1491-1499
    • (1999) Mycol. Res. , vol.103 , pp. 1491-1499
    • Stewart, E.L.1    Liu, Z.2    Crous, P.W.3    Szabo, L.J.4
  • 88
    • 33746755221 scopus 로고    scopus 로고
    • Sutton, B.C., Waterston, J.M., 1966. Septoria lycopersici: description of pathogenic fungi and bacteria No. 89. Commonw. Mycol. Inst. Kew, England.
  • 89
    • 33746671821 scopus 로고    scopus 로고
    • Sutton, B.C., 1980. The Coelomycetes: fungi imperfecti with pycnidia, acervuli and stromata. CAB, Commonwealth Mycological Institute, Kew, England.
  • 90
    • 0037058983 scopus 로고    scopus 로고
    • Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics
    • Suzuki Y., Glazko G.V., and Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc. Nat. Acad. Sci. USA 99 (2002) 16138-16143
    • (2002) Proc. Nat. Acad. Sci. USA , vol.99 , pp. 16138-16143
    • Suzuki, Y.1    Glazko, G.V.2    Nei, M.3
  • 91
    • 33746748680 scopus 로고    scopus 로고
    • Swofford, D.L., 2003. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
  • 92
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis D.M., Moritz C., and Mable B.K. (Eds), Sinauer Associates, Sunderland, Massachusetts
    • Swofford D.L., Olsen G.J., Waddell P.J., and Hillis D.M. Phylogenetic inference. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular systematics. second ed. (1996), Sinauer Associates, Sunderland, Massachusetts 407-514
    • (1996) Molecular systematics. second ed. , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 93
    • 0027453388 scopus 로고
    • Simple methods for testing molecular clock hypothesis
    • Tajima F. Simple methods for testing molecular clock hypothesis. Genetics 135 (1993) 599-607
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 94
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., and Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 95
    • 0034907489 scopus 로고    scopus 로고
    • Shared nucleotide composition biases among species and their impact on phylogenetic reconstruction of the Drosophilidae
    • Tarrío R., Rodríguez-Trelles F., and Ayala F.J. Shared nucleotide composition biases among species and their impact on phylogenetic reconstruction of the Drosophilidae. Mol. Biol. Evol. 18 (2001) 1464-1473
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1464-1473
    • Tarrío, R.1    Rodríguez-Trelles, F.2    Ayala, F.J.3
  • 96
    • 0021084212 scopus 로고
    • Phylogenetic inference from restriction endonuclease cleavage site maps with a particular reference to the evolution of humans and apes
    • Templeton A.R. Phylogenetic inference from restriction endonuclease cleavage site maps with a particular reference to the evolution of humans and apes. Evolution 37 (1983) 221-244
    • (1983) Evolution , vol.37 , pp. 221-244
    • Templeton, A.R.1
  • 97
    • 0009351264 scopus 로고
    • Leaf-spot diseases of poplars caused by S. musiva and S. populicola
    • Thompson G.E. Leaf-spot diseases of poplars caused by S. musiva and S. populicola. Phytopathology 31 (1941) 241-254
    • (1941) Phytopathology , vol.31 , pp. 241-254
    • Thompson, G.E.1
  • 98
  • 99
    • 0031960084 scopus 로고    scopus 로고
    • Ultrastructure of conidiogenesis in two species of Septoria sensus lato
    • Verkley G.J.M. Ultrastructure of conidiogenesis in two species of Septoria sensus lato. Mycologia 90 (1998) 189-198
    • (1998) Mycologia , vol.90 , pp. 189-198
    • Verkley, G.J.M.1
  • 100
    • 0034383287 scopus 로고    scopus 로고
    • Septoria and similar coelomycetous anamorphs of Mycosphaerella
    • Verkley G.J.M., and Priest M.J. Septoria and similar coelomycetous anamorphs of Mycosphaerella. Stud. Mycol. 43 (2000) 123-128
    • (2000) Stud. Mycol. , vol.43 , pp. 123-128
    • Verkley, G.J.M.1    Priest, M.J.2
  • 101
    • 33746715489 scopus 로고    scopus 로고
    • A phylogenetic study of some Septoria species pathogenic to Asteraceae based on ITS ribosomal DNA sequences
    • Verkley G.J.M., and Starink-Willemse M. A phylogenetic study of some Septoria species pathogenic to Asteraceae based on ITS ribosomal DNA sequences. Mycol. Prog. 3 (2004) 315-323
    • (2004) Mycol. Prog. , vol.3 , pp. 315-323
    • Verkley, G.J.M.1    Starink-Willemse, M.2
  • 102
    • 9344224525 scopus 로고    scopus 로고
    • Mycosphaerella punctiformis revisited: morphology, phylogeny, and epitypification of the type species of the Mycosphaerella (Dothideale, Ascomycota)
    • Verkley G.J.M., Crous P.W., Groenwald J.Z.E., Braun U., and Aptroot A. Mycosphaerella punctiformis revisited: morphology, phylogeny, and epitypification of the type species of the Mycosphaerella (Dothideale, Ascomycota). Mycol. Res. 108 (2004) 1271-1282
    • (2004) Mycol. Res. , vol.108 , pp. 1271-1282
    • Verkley, G.J.M.1    Crous, P.W.2    Groenwald, J.Z.E.3    Braun, U.4    Aptroot, A.5
  • 103
    • 2942694529 scopus 로고    scopus 로고
    • Phylogenetic analyses of Septoria species based on the ITS and LSU-D2 regions of nuclear ribosomal DNA
    • Verkley G.J.M., Starink-Willemse M., van Iperen A., and Abeln E.C.A. Phylogenetic analyses of Septoria species based on the ITS and LSU-D2 regions of nuclear ribosomal DNA. Mycologia 96 (2004) 558-571
    • (2004) Mycologia , vol.96 , pp. 558-571
    • Verkley, G.J.M.1    Starink-Willemse, M.2    van Iperen, A.3    Abeln, E.C.A.4
  • 106
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds), Academic Press, New York city, New York
    • White T.J., Bruns T., Lee S., and Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: A Guide to Methods and Applications (1990), Academic Press, New York city, New York 315-322
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 107
    • 0032226105 scopus 로고    scopus 로고
    • Combining data sets with different phylogenetic histories
    • Wiens J.J. Combining data sets with different phylogenetic histories. Syst. Biol. 47 (1998) 568-581
    • (1998) Syst. Biol. , vol.47 , pp. 568-581
    • Wiens, J.J.1
  • 108
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • Wilcox P., Zwickl D.J., Heath T.A., and Hillis D.M. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol. Phylogenet. Evol. 25 (2002) 361-371
    • (2002) Mol. Phylogenet. Evol. , vol.25 , pp. 361-371
    • Wilcox, P.1    Zwickl, D.J.2    Heath, T.A.3    Hillis, D.M.4
  • 109
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39 (1994) 105-111
    • (1994) J. Mol. Evol. , vol.39 , pp. 105-111
    • Yang, Z.1
  • 110
    • 0035527350 scopus 로고    scopus 로고
    • Failure of the ILD to determine data combinability for slow loris phylogeny
    • Yoder A.D., Irwin J.A., and Payseur B.A. Failure of the ILD to determine data combinability for slow loris phylogeny. Syst. Biol. 50 (2001) 408-424
    • (2001) Syst. Biol. , vol.50 , pp. 408-424
    • Yoder, A.D.1    Irwin, J.A.2    Payseur, B.A.3
  • 111
    • 0034769806 scopus 로고    scopus 로고
    • Primers for amplification of mtSSU-rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi
    • Zhou S., and Stanosz G.R. Primers for amplification of mtSSU-rDNA, and a phylogenetic study of Botryosphaeria and associated anamorphic fungi. Mycol. Res. 105 (2001) 1033-1044
    • (2001) Mycol. Res. , vol.105 , pp. 1033-1044
    • Zhou, S.1    Stanosz, G.R.2
  • 112
    • 0022657713 scopus 로고
    • Inheritance of DNA methylation in Coprinus cinereus
    • Zolan M., and Pukkila P. Inheritance of DNA methylation in Coprinus cinereus. Mol. Cell. Biol. 6 (1986) 195-200
    • (1986) Mol. Cell. Biol. , vol.6 , pp. 195-200
    • Zolan, M.1    Pukkila, P.2


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