-
1
-
-
23944521260
-
Farnesoid X receptor: From structure to potential clinical applications
-
Pellicciari, R.; Costantino, G.; Fiorucci, S. Farnesoid X receptor: from structure to potential clinical applications J. Med. Chem. 2005, 48, 5383-5403.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 5383-5403
-
-
Pellicciari, R.1
Costantino, G.2
Fiorucci, S.3
-
2
-
-
0033026760
-
Endogenous bile acids are ligands for the nuclear receptor FXR/BAR
-
Wang, H.; Chen, J.; Hollister, K.; Sowers, L. C.; Forman, B. M. Endogenous bile acids are ligands for the nuclear receptor FXR/BAR. Mol. Cell 1999, 3, 543-553.
-
(1999)
Mol. Cell
, vol.3
, pp. 543-553
-
-
Wang, H.1
Chen, J.2
Hollister, K.3
Sowers, L.C.4
Forman, B.M.5
-
3
-
-
0033591387
-
Bile acids: Natural ligands for an orphan nuclear receptor
-
Parks, D. J.; Blanchard, S. G.; Bledsoe, R. K.; Chandra, G.; Consler, T. G.; Kliewer, S. A.; Stimmel, J. B.; Willson, T. M.; Zavacki, A. M.; Moore, D. D.; Lehmann, J. M. Bile acids: natural ligands for an orphan nuclear receptor. Science 1999, 284, 1365-1368.
-
(1999)
Science
, vol.284
, pp. 1365-1368
-
-
Parks, D.J.1
Blanchard, S.G.2
Bledsoe, R.K.3
Chandra, G.4
Consler, T.G.5
Kliewer, S.A.6
Stimmel, J.B.7
Willson, T.M.8
Zavacki, A.M.9
Moore, D.D.10
Lehmann, J.M.11
-
4
-
-
0033591297
-
Identification of a nuclear receptor for bile acids
-
Makishima, M.; Okamoto, A. Y.; Repa, J. J.; Tu, H.; Learned, R. M.; Luk, A.; Hull, M. V.; Lustig, K. D.; Mangelsdorf, D. J.; Shan, B. Identification of a nuclear receptor for bile acids. Science 1999, 284, 1362-1365.
-
(1999)
Science
, vol.284
, pp. 1362-1365
-
-
Makishima, M.1
Okamoto, A.Y.2
Repa, J.J.3
Tu, H.4
Learned, R.M.5
Luk, A.6
Hull, M.V.7
Lustig, K.D.8
Mangelsdorf, D.J.9
Shan, B.10
-
5
-
-
0037101810
-
6-α-ethyl-chenodeoxycholic acid (6-ECDCA), a potent and selective FXR agonist endowed with anticholestatic activity
-
Pellicciari, R.; Fiorucci, S.; Camaioni, E.; Clerici, C.; Costantino, G.; Maloney, P. R.; Morelli, A.; Parks, D. J.; Willson, T. M. 6-α-Ethyl- chenodeoxycholic acid (6-ECDCA), a potent and selective FXR agonist endowed with anticholestatic activity. J. Med. Chem. 2002, 45, 3569-3572.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 3569-3572
-
-
Pellicciari, R.1
Fiorucci, S.2
Camaioni, E.3
Clerici, C.4
Costantino, G.5
Maloney, P.R.6
Morelli, A.7
Parks, D.J.8
Willson, T.M.9
-
6
-
-
0034632762
-
Identification of a chemical tool for the orphan nuclear receptor FXR
-
Maloney, P. R.; Parks, D. J.; Haffner, C. D.; Fivush, A. M.; Chandra, G.; Plunket, K. D.; Creech, K. L.; Moore, L. B.; Wilson, J. G.; Lewis, M. C.; Jones, S. A.; Willson, T. M. Identification of a chemical tool for the orphan nuclear receptor FXR. J. Med. Chem. 2000, 43, 2971-2974.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 2971-2974
-
-
Maloney, P.R.1
Parks, D.J.2
Haffner, C.D.3
Fivush, A.M.4
Chandra, G.5
Plunket, K.D.6
Creech, K.L.7
Moore, L.B.8
Wilson, J.G.9
Lewis, M.C.10
Jones, S.A.11
Willson, T.M.12
-
7
-
-
0038274333
-
Discovery and optimization of non-steroidal FXR agonists from natural product-like libraries
-
Nicolaou, K. C.; Evans, R. M.; Roecker, A. J.; Hughes, R.; Downes, M.; Pfefferkorn, J. A. Discovery and optimization of non-steroidal FXR agonists from natural product-like libraries. Org. Biomol. Chem. 2003, 1, 908-920.
-
(2003)
Org. Biomol. Chem.
, vol.1
, pp. 908-920
-
-
Nicolaou, K.C.1
Evans, R.M.2
Roecker, A.J.3
Hughes, R.4
Downes, M.5
Pfefferkorn, J.A.6
-
8
-
-
0033637121
-
A regulatory cascade of the nuclear receptors FXR, SHP-1, and LRH-1 represses bile acid biosynthesis
-
Goodwin, B.; Jones, S. A.; Price, R. R.; Watson, M. A.; McKee, D. D.; Moore, L. B.; Galardi, C.; Wilson, J. G.; Lewis, M. C.; Roth, M. E.; Maloney, P. R.; Willson, T. M.; Kliewer, S. A. A regulatory cascade of the nuclear receptors FXR, SHP-1, and LRH-1 represses bile acid biosynthesis. Mol. Cell 2000, 6, 517-526.
-
(2000)
Mol. Cell
, vol.6
, pp. 517-526
-
-
Goodwin, B.1
Jones, S.A.2
Price, R.R.3
Watson, M.A.4
McKee, D.D.5
Moore, L.B.6
Galardi, C.7
Wilson, J.G.8
Lewis, M.C.9
Roth, M.E.10
Maloney, P.R.11
Willson, T.M.12
Kliewer, S.A.13
-
9
-
-
0033636789
-
Molecular basis for feedback regulation of bile acid synthesis by nuclear receptors
-
Lu, T. T.; Makishima, M.; Repa, J. J.; Schoonjans, K.; Kerr, T. A.; Auwerx, J.; Mangelsdorf, D. J. Molecular basis for feedback regulation of bile acid synthesis by nuclear receptors. Mol. Cell 2000, 6, 507-515.
-
(2000)
Mol. Cell
, vol.6
, pp. 507-515
-
-
Lu, T.T.1
Makishima, M.2
Repa, J.J.3
Schoonjans, K.4
Kerr, T.A.5
Auwerx, J.6
Mangelsdorf, D.J.7
-
10
-
-
0034950514
-
The orphan nuclear receptor shp mediates bile acid-induced inhibition of the rat bile acid transporter ntcp
-
Denson, L. A.; Sturm, E.; Echaverria, W.; Zimmerman, T. L.; Makishima, M.; Mangelsdorf, D. J.; Karpen, S. J. The orphan nuclear receptor shp mediates bile acid-induced inhibition of the rat bile acid transporter ntcp. Gastroenterology 2001, 121, 140-147.
-
(2001)
Gastroenterology
, vol.121
, pp. 140-147
-
-
Denson, L.A.1
Sturm, E.2
Echaverria, W.3
Zimmerman, T.L.4
Makishima, M.5
Mangelsdorf, D.J.6
Karpen, S.J.7
-
11
-
-
0034664729
-
Targeted disruption of the nuclear receptor FXR/BAR impairs bile acid and lipid homeostasis
-
Sinal, C. J.; Tohkin, M.; Miyata, M.; Ward, J. M.; Lambert, G.; Gonzales, F. J. Targeted disruption of the nuclear receptor FXR/BAR impairs bile acid and lipid homeostasis. Cell 2000, 102, 731-744.
-
(2000)
Cell
, vol.102
, pp. 731-744
-
-
Sinal, C.J.1
Tohkin, M.2
Miyata, M.3
Ward, J.M.4
Lambert, G.5
Gonzales, F.J.6
-
12
-
-
1842527650
-
Glucose regulates the expression of the farnesoid X receptor in liver
-
Duran-Sandoval, D.; Mautino, G.; Martin, G.; Percevault, F.; Barbier, O.; Fruchart, J. C.; Kuipers, F.; Staels, B. Glucose regulates the expression of the farnesoid X receptor in liver. Diabetes 2004, 53, 890-898.
-
(2004)
Diabetes
, vol.53
, pp. 890-898
-
-
Duran-Sandoval, D.1
Mautino, G.2
Martin, G.3
Percevault, F.4
Barbier, O.5
Fruchart, J.C.6
Kuipers, F.7
Staels, B.8
-
13
-
-
14244264780
-
Regulation of carbohydrate metabolism by the farnesoid X receptor
-
Stayrook, K. R.; Bramlett, K. S.; Savkur, R. S.; Ficorilli, J.; Todd, C.; Christe, M. E.; Michael, L. F.; Burris, T. P. Regulation of carbohydrate metabolism by the farnesoid X receptor. Endocrinology 2005, 146, 984-991.
-
(2005)
Endocrinology
, vol.146
, pp. 984-991
-
-
Stayrook, K.R.1
Bramlett, K.S.2
Savkur, R.S.3
Ficorilli, J.4
Todd, C.5
Christe, M.E.6
Michael, L.F.7
Burris, T.P.8
-
14
-
-
14544270531
-
Potential regulatory role of the farnesoid X receptor in the metabolic syndrome
-
Duran-Sandoval, D.; Cariou, B.; Fruchart, J.-C.; Staels, B. Potential regulatory role of the farnesoid X receptor in the metabolic syndrome. Biochimie 2005, 87, 93-98.
-
(2005)
Biochimie
, vol.87
, pp. 93-98
-
-
Duran-Sandoval, D.1
Cariou, B.2
Fruchart, J.-C.3
Staels, B.4
-
15
-
-
0342616837
-
A canonical structure for the ligand-binding domain of nuclear receptors
-
Wurtz, J. M.; Bourguet, W.; Renaud, J. P.; Vivat, V.; Chambon, P.; Moras, D.; Gronemeyer, H. A canonical structure for the ligand-binding domain of nuclear receptors. Nat. Struct. Biol. 1996, 3, 87-94.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 87-94
-
-
Wurtz, J.M.1
Bourguet, W.2
Renaud, J.P.3
Vivat, V.4
Chambon, P.5
Moras, D.6
Gronemeyer, H.7
-
16
-
-
0038752647
-
Structural basis for bile acid binding and activation of the nuclear receptor FXR
-
Mi, L. Z.; Devarakonda, S.; Harp, J. M.; Han, Q.; Pellicciari, R.; Willson, T. M.; Khorasanizadeh, S.; Rastinejad, F. Structural basis for bile acid binding and activation of the nuclear receptor FXR. Mol. Cell 2003, 11, 1093-1100.
-
(2003)
Mol. Cell
, vol.11
, pp. 1093-1100
-
-
Mi, L.Z.1
Devarakonda, S.2
Harp, J.M.3
Han, Q.4
Pellicciari, R.5
Willson, T.M.6
Khorasanizadeh, S.7
Rastinejad, F.8
-
17
-
-
18444405534
-
A ligand-mediated hydrogen bond network required for the activation of the mineralocorticoid receptor
-
(a) Bledsoe, R. K.; Montana, V. G.; Stanley, T. B.; Delves, C. J.; Apolito, C. J.; McKee, D. D.; Consler, T. G.; Parks, D. J.; Stewart, E. L.; Willson, T. M.; Williams, S. P. A ligand-mediated hydrogen bond network required for the activation of the mineralocorticoid receptor. Cell 2002, 110, 93-105.
-
(2002)
Cell
, vol.110
, pp. 93-105
-
-
Bledsoe, R.K.1
Montana, V.G.2
Stanley, T.B.3
Delves, C.J.4
Apolito, C.J.5
McKee, D.D.6
Consler, T.G.7
Parks, D.J.8
Stewart, E.L.9
Willson, T.M.10
Williams, S.P.11
-
18
-
-
0030667676
-
Molecular basis of agonism and antagonism in estrogen receptor
-
(b) Brzozowski, A. M.; Pike, A. C.; Dauter, Z.; Hubbard, R. E.; Bonn, T.; Engstrom, O.; Ohman, L.; Greene, G. L.; Gustafsson, J. A.; Carlquist, M. Molecular basis of agonism and antagonism in estrogen receptor. Nature 1997, 389, 753-758.
-
(1997)
Nature
, vol.389
, pp. 753-758
-
-
Brzozowski, A.M.1
Pike, A.C.2
Dauter, Z.3
Hubbard, R.E.4
Bonn, T.5
Engstrom, O.6
Ohman, L.7
Greene, G.L.8
Gustafsson, J.A.9
Carlquist, M.10
-
19
-
-
0035942197
-
Crystallographic structures of the ligand-binding domains of the androgen receptor and its T877A mutant complexed with the natural agonist dihydrotestosterone
-
Sack, J. S.; Kish, K. F.; Wang, C.; Attar, R. M.; Kiefer, S. E.; An, Y.; Wu, G. Y.; Scheffler, J. E.; Salvati, M. E.; Krystek, S. R.; et al. Crystallographic structures of the ligand-binding domains of the androgen receptor and its T877A mutant complexed with the natural agonist dihydrotestosterone. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 4904-4909.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 4904-4909
-
-
Sack, J.S.1
Kish, K.F.2
Wang, C.3
Attar, R.M.4
Kiefer, S.E.5
An, Y.6
Wu, G.Y.7
Scheffler, J.E.8
Salvati, M.E.9
Krystek, S.R.10
-
20
-
-
0032446607
-
The structural basis of estrogen receptor/coactivator recognition and the antagonism of this interaction by tamoxifen
-
Shiau, A. K.; Barstad, D.; Loria, P. M.; Cheng, L.; Kushner, P. J.; Agard, D. A.; Greene, G. L. The structural basis of estrogen receptor/coactivator recognition and the antagonism of this interaction by tamoxifen. Cell 1998, 95, 927-937.
-
(1998)
Cell
, vol.95
, pp. 927-937
-
-
Shiau, A.K.1
Barstad, D.2
Loria, P.M.3
Cheng, L.4
Kushner, P.J.5
Agard, D.A.6
Greene, G.L.7
-
21
-
-
0032575057
-
Atomic structure of progesterone complexed with its receptor
-
(e) Williams, S. P.; Sigler, P. B. Atomic structure of progesterone complexed with its receptor. Nature 1998, 393, 392-396.
-
(1998)
Nature
, vol.393
, pp. 392-396
-
-
Williams, S.P.1
Sigler, P.B.2
-
22
-
-
27444441918
-
Is antagonism of E/Z-guggulsterone at the farnesoid X receptor mediated by a noncanonical binding site? a molecular modeling study
-
Meyer, U.; Costantino, G.; Macchiarulo, A.; Pellicciari, R. Is antagonism of E/Z-guggulsterone at the farnesoid X receptor mediated by a noncanonical binding site? A molecular modeling study. J. Med. Chem. 2005, 48, 6948-6955.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6948-6955
-
-
Meyer, U.1
Costantino, G.2
Macchiarulo, A.3
Pellicciari, R.4
-
23
-
-
4143056853
-
Bile acid derivatives as ligands of the farnesoid X receptor. Synthesis, evaluation, and structure-activity relationship of a series of body and side chain modified analogues of chenodeoxycholic acid
-
Pellicciari, R.; Costantino, G.; Camaioni, E.; Sadeghpour, B. M.; Entrena, A.; Willson, T. M.; Fiorucci, S.; Clerici, C.; Gioiello, A. Bile acid derivatives as ligands of the farnesoid X receptor. Synthesis, evaluation, and structure-activity relationship of a series of body and side chain modified analogues of chenodeoxycholic acid. J. Med. Chem. 2004, 47, 4559-4569.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 4559-4569
-
-
Pellicciari, R.1
Costantino, G.2
Camaioni, E.3
Sadeghpour, B.M.4
Entrena, A.5
Willson, T.M.6
Fiorucci, S.7
Clerici, C.8
Gioiello, A.9
-
24
-
-
0031916140
-
Metabolic fate and hepatocyte toxicity of reverse amide analogs of conjugated ursodeoxycholate in the rat
-
Coleman, J. P.; Kirby, L. C.; Setchell, K. D.; Hylemon, P. B.; Pandak, M.; Heuman, D. M.; Vlahcevic, Z. R. Metabolic fate and hepatocyte toxicity of reverse amide analogs of conjugated ursodeoxycholate in the rat. J. Steroid Biochem. Mol. Biol. 1998, 64, 91-101.
-
(1998)
J. Steroid Biochem. Mol. Biol.
, vol.64
, pp. 91-101
-
-
Coleman, J.P.1
Kirby, L.C.2
Setchell, K.D.3
Hylemon, P.B.4
Pandak, M.5
Heuman, D.M.6
Vlahcevic, Z.R.7
-
25
-
-
0018476938
-
Synthesis of monosulfates of unconjugated bile acids
-
Goto, J.; Kato, H.; Hasegawa, F.; Nambara, T. Synthesis of monosulfates of unconjugated bile acids. Chem. Pharm. Bull. 1979, 27, 1402-1411.
-
(1979)
Chem. Pharm. Bull.
, vol.27
, pp. 1402-1411
-
-
Goto, J.1
Kato, H.2
Hasegawa, F.3
Nambara, T.4
-
26
-
-
18244361820
-
Molecular dynamics simulation of the ligand binding domain of farnesoid X receptor. Insight into helix-12 stability and coactivator peptide stabilization in response to agonist binding
-
Costantino, G.; Entrena-Gaudix, A.; Macchiarlo, A.; Gioiello, A.; Pellicciari, R. Molecular dynamics simulation of the ligand binding domain of farnesoid X receptor. Insight into helix-12 stability and coactivator peptide stabilization in response to agonist binding. J. Med. Chem. 2005, 48, 3251-3259.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 3251-3259
-
-
Costantino, G.1
Entrena-Gaudix, A.2
Macchiarlo, A.3
Gioiello, A.4
Pellicciari, R.5
-
27
-
-
14944343171
-
Docking and scoring of metallo-beta-lactamases inhibitors
-
Olsen, L.; Pettersson, I.; Hemmingsen, L.; Adolph, H. W.; Jorgensen, F. S. Docking and scoring of metallo-beta-lactamases inhibitors. J. Comput.-Aided Mol. Des. 2004, 18, 287-302
-
(2004)
J. Comput.-Aided Mol. Des.
, vol.18
, pp. 287-302
-
-
Olsen, L.1
Pettersson, I.2
Hemmingsen, L.3
Adolph, H.W.4
Jorgensen, F.S.5
-
28
-
-
0004301669
-
-
Tripos Inc. S. Hanley Rd, St. Louis, MO 63144-2913
-
Sybyl Molecular Modeling Software; Tripos Inc. (1699 S. Hanley Rd, St. Louis, MO 63144-2913); http://www.tripos.com.
-
(1699)
Sybyl Molecular Modeling Software
-
-
-
29
-
-
49149147973
-
Iterative partial equalization of orbital electronegativity. A rapid access to atomic charges
-
(a) Gasteiger, J.; Marsili, M. Iterative partial equalization of orbital electronegativity. A rapid access to atomic charges. Tetrahedron, 1980, 36, 3219-3228.
-
(1980)
Tetrahedron
, vol.36
, pp. 3219-3228
-
-
Gasteiger, J.1
Marsili, M.2
-
30
-
-
0000939786
-
Charge distributions from molecular topology and pi-orbital electronegativity
-
(b) Marsili, M.; Gasteiger, J. Charge distributions from molecular topology and pi-orbital electronegativity. Croat. Chem. Acta 1980, 53, 601-614.
-
(1980)
Croat. Chem. Acta
, vol.53
, pp. 601-614
-
-
Marsili, M.1
Gasteiger, J.2
-
31
-
-
84986870156
-
Prediction of proton magnetic resonance shifts: The dependence on hydrogen charges obtained by iterative partial equalization of orbital electronegativity
-
Gasteiger, J.; Marsili, M. Prediction of proton magnetic resonance shifts: the dependence on hydrogen charges obtained by iterative partial equalization of orbital electronegativity. Org. Magn. Reson. 1981, 15, 353-360.
-
(1981)
Org. Magn. Reson.
, vol.15
, pp. 353-360
-
-
Gasteiger, J.1
Marsili, M.2
-
32
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 1998, 19, 1639-1662.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
33
-
-
33745843838
-
-
program is available from the Molecular Graphics Laboratory, at The Scripps Research Institute
-
AutoDock Tools (ADT) program is available from the Molecular Graphics Laboratory, at The Scripps Research Institute; http://www.scripps.edu/inb/olson/ index.html.
-
AutoDock Tools (ADT)
-
-
|