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Volumn 17, Issue 6, 2006, Pages 480-489

Integrated gene expression profiling and linkage analysis in the rat

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; TRANS ACTING FACTOR;

EID: 33745208450     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-005-0181-1     Document Type: Article
Times cited : (19)

References (48)
  • 1
    • 0032958470 scopus 로고    scopus 로고
    • Identification of Cd36 (fat) as an insulin-resistance gene causing defective fatty acid and glucose metabolism in hypertensive rats
    • Aitman TJ, Glazier AM, Wallace CA, Cooper LD, Norsworthy PJ, et al. (1999) Identification of Cd36 (fat) as an insulin-resistance gene causing defective fatty acid and glucose metabolism in hypertensive rats. Nat Genet 21, 76-83
    • (1999) Nat Genet , vol.21 , pp. 76-83
    • Aitman, T.J.1    Glazier, A.M.2    Wallace, C.A.3    Cooper, L.D.4    Norsworthy, P.J.5
  • 2
    • 32844460938 scopus 로고    scopus 로고
    • Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans
    • Aitman TJ, Dong R, Vyse TJ, Norsworthy PJ, Johnson MD, et al. (2006) Copy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans. Nature 439, 851-855
    • (2006) Nature , vol.439 , pp. 851-855
    • Aitman, T.J.1    Dong, R.2    Vyse, T.J.3    Norsworthy, P.J.4    Johnson, M.D.5
  • 3
    • 0031914691 scopus 로고    scopus 로고
    • Effect of within-strain sample size on QTL detection and mapping using recombinant inbred mouse strains
    • Belknap JK (1998) Effect of within-strain sample size on QTL detection and mapping using recombinant inbred mouse strains. Behav Genet 28, 29-38
    • (1998) Behav Genet , vol.28 , pp. 29-38
    • Belknap, J.K.1
  • 4
    • 27544473473 scopus 로고    scopus 로고
    • Quantitative trait loci analysis using the false discovery rate
    • Benjamini Y, Yekutieli D (2005) Quantitative trait loci analysis using the false discovery rate. Genetics 171, 783-790
    • (2005) Genetics , vol.171 , pp. 783-790
    • Benjamini, Y.1    Yekutieli, D.2
  • 5
    • 15544364093 scopus 로고    scopus 로고
    • The genomes of recombinant inbred lines
    • Broman KW (2005) The genomes of recombinant inbred lines. Genetics 169, 1133-1146
    • (2005) Genetics , vol.169 , pp. 1133-1146
    • Broman, K.W.1
  • 6
    • 20144383240 scopus 로고    scopus 로고
    • Uncovering regulatory pathways that affect hematopoietic stem cell function using "genetical genomics"
    • Bystrykh L, Weersing E, Dontje B, Sutton S, Pletcher MT, et al. (2005) Uncovering regulatory pathways that affect hematopoietic stem cell function using "genetical genomics." Nat Genet 37, 225-232
    • (2005) Nat Genet , vol.37 , pp. 225-232
    • Bystrykh, L.1    Weersing, E.2    Dontje, B.3    Sutton, S.4    Pletcher, M.T.5
  • 7
    • 0036637271 scopus 로고    scopus 로고
    • Animal models of neurological deficits: How relevant is the rat?
    • Cenci MA, Whishaw IQ, Schallert T (2002) Animal models of neurological deficits: how relevant is the rat? Nat Rev Neurosci 3, 574-579
    • (2002) Nat Rev Neurosci , vol.3 , pp. 574-579
    • Cenci, M.A.1    Whishaw, I.Q.2    Schallert, T.3
  • 8
    • 2142652098 scopus 로고    scopus 로고
    • WebQTL: Rapid exploratory analysis of gene expression and genetic networks for brain and behavior
    • Chesler EJ, Lu L, Wang J, Williams RW, Manly KF (2004) WebQTL: Rapid exploratory analysis of gene expression and genetic networks for brain and behavior. Nat Neurosci 7, 485-486
    • (2004) Nat Neurosci , vol.7 , pp. 485-486
    • Chesler, E.J.1    Lu, L.2    Wang, J.3    Williams, R.W.4    Manly, K.F.5
  • 9
    • 20144386111 scopus 로고    scopus 로고
    • Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function
    • Chesler EJ, Lu L, Shou S, Qu Y, Gu J, Wang J, et al. (2005) Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function. Nat Genet 37, 233-242
    • (2005) Nat Genet , vol.37 , pp. 233-242
    • Chesler, E.J.1    Lu, L.2    Shou, S.3    Qu, Y.4    Gu, J.5    Wang, J.6
  • 10
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 11
    • 0037142101 scopus 로고    scopus 로고
    • Angiotensin-converting enzyme 2 is an essential regulator of heart function
    • Crackower MA, Sarao R, Oudit GY, Yagil C Kozieradzki I, et al. (2002) Angiotensin-converting enzyme 2 is an essential regulator of heart function. Nature 417, 822-828
    • (2002) Nature , vol.417 , pp. 822-828
    • Crackower, M.A.1    Sarao, R.2    Oudit, G.Y.3    Yagil, C.4    Kozieradzki, I.5
  • 12
    • 3442878227 scopus 로고    scopus 로고
    • A note on the effect of within-strain sample sizes on QTL mapping in recombinant inbred strain studies
    • Crusio WE (2004) A note on the effect of within-strain sample sizes on QTL mapping in recombinant inbred strain studies. Genes Brain Behav 3, 249-251
    • (2004) Genes Brain Behav , vol.3 , pp. 249-251
    • Crusio, W.E.1
  • 13
    • 0028285005 scopus 로고
    • Quantitative trait loci underlying gene product variation: A novel perspective for analyzing regulation of genome expression
    • Damerval C, Maurice A, Josse IM, de Vienne D (1994) Quantitative trait loci underlying gene product variation: a novel perspective for analyzing regulation of genome expression. Genetics 137, 289-301
    • (1994) Genetics , vol.137 , pp. 289-301
    • Damerval, C.1    Maurice, A.2    Josse, I.M.3    De Vienne, D.4
  • 14
    • 20644454887 scopus 로고    scopus 로고
    • Genetical genomics in humans and model organisms
    • de Koning DJ, Haley CS (2005) Genetical genomics in humans and model organisms. Trends Genet 21, 377-381
    • (2005) Trends Genet , vol.21 , pp. 377-381
    • De Koning, D.J.1    Haley, C.S.2
  • 15
    • 0034073957 scopus 로고    scopus 로고
    • Mapping of quantitative trait loci (qtl) of differential stress gene expression in rat recombinant inbred strains
    • Dumas P, Sun Y, Corbeil G, Tremblay S, Pausova Z, et al. (2000) Mapping of quantitative trait loci (qtl) of differential stress gene expression in rat recombinant inbred strains. J Hypertens 18, 545-551
    • (2000) J Hypertens , vol.18 , pp. 545-551
    • Dumas, P.1    Sun, Y.2    Corbeil, G.3    Tremblay, S.4    Pausova, Z.5
  • 16
    • 15944376562 scopus 로고    scopus 로고
    • Strategies for mapping and cloning quantitative trait genes in rodents
    • Flint J, Valdar W, Shifman S, Mott R (2005) Strategies for mapping and cloning quantitative trait genes in rodents. Nat Rev Genet 6, 271-286
    • (2005) Nat Rev Genet , vol.6 , pp. 271-286
    • Flint, J.1    Valdar, W.2    Shifman, S.3    Mott, R.4
  • 17
    • 0035570186 scopus 로고    scopus 로고
    • Genetic dissection of region around the Sa gene on rat chromosome 1: Evidence for multiple loci affecting blood pressure
    • Frantz S, Clemitson JR, Bihoreau MT, Gauguier D, Samani NJ (2001) Genetic dissection of region around the Sa gene on rat chromosome 1: evidence for multiple loci affecting blood pressure. Hypertension 38, 216-221
    • (2001) Hypertension , vol.38 , pp. 216-221
    • Frantz, S.1    Clemitson, J.R.2    Bihoreau, M.T.3    Gauguier, D.4    Samani, N.J.5
  • 18
    • 14644437750 scopus 로고    scopus 로고
    • Locating a blood pressure quantitative trait locus within 117 kb on the rat genome: Substitution mapping and renal expression analysis
    • Garrett MR, Meng H, Rapp JP, Joe B (2005) Locating a blood pressure quantitative trait locus within 117 kb on the rat genome: substitution mapping and renal expression analysis. Hypertension 45, 451-459
    • (2005) Hypertension , vol.45 , pp. 451-459
    • Garrett, M.R.1    Meng, H.2    Rapp, J.P.3    Joe, B.4
  • 19
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the Brown Norway rat yields insights into mammalian evolution
    • Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428, 493-521
    • (2004) Nature , vol.428 , pp. 493-521
    • Gibbs, R.A.1    Weinstock, G.M.2    Metzker, M.L.3    Muzny, D.M.4    Sodergren, E.J.5
  • 20
    • 0037146578 scopus 로고    scopus 로고
    • Finding genes that underlie complex traits
    • Glazier AM, Nadeau JH, Aitman TJ (2002) Finding genes that underlie complex traits. Science 298, 2345-2349
    • (2002) Science , vol.298 , pp. 2345-2349
    • Glazier, A.M.1    Nadeau, J.H.2    Aitman, T.J.3
  • 21
    • 0035704714 scopus 로고    scopus 로고
    • Arthritis induced in rats with nonimmunogenic adjuvants as models for rheumatoid arthritis
    • Holmdahl R, Lorentzen JC, Lu S, Olofsson P, Wester L, et al. (2001) Arthritis induced in rats with nonimmunogenic adjuvants as models for rheumatoid arthritis. Immunol Rev 184, 184-202
    • (2001) Immunol Rev , vol.184 , pp. 184-202
    • Holmdahl, R.1    Lorentzen, J.C.2    Lu, S.3    Olofsson, P.4    Wester, L.5
  • 22
    • 20144377218 scopus 로고    scopus 로고
    • Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
    • Hubner N, Wallace CA, Zimdahl H, Petretto E, Schulz H, et al. (2005) Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nat Genet 37, 243-253
    • (2005) Nat Genet , vol.37 , pp. 243-253
    • Hubner, N.1    Wallace, C.A.2    Zimdahl, H.3    Petretto, E.4    Schulz, H.5
  • 24
    • 0035400051 scopus 로고    scopus 로고
    • Genetical genomics: The added value from segregation
    • Jansen RC, Nap JP (2001) Genetical genomics: the added value from segregation. Trends Genet 17, 388-391
    • (2001) Trends Genet , vol.17 , pp. 388-391
    • Jansen, R.C.1    Nap, J.P.2
  • 25
    • 5944254200 scopus 로고    scopus 로고
    • Identification of complement factor 5 as a susceptibility locus for experimental allergic asthma
    • Karp CL, Grupe A, Schadt E, Ewart SL, Keane-Moore M, et al. (2000) Identification of complement factor 5 as a susceptibility locus for experimental allergic asthma. Nat Immunol 1, 221-226
    • (2000) Nat Immunol , vol.1 , pp. 221-226
    • Karp, C.L.1    Grupe, A.2    Schadt, E.3    Ewart, S.L.4    Keane-Moore, M.5
  • 26
    • 0033790231 scopus 로고    scopus 로고
    • Multitrait least squares for quantitative trait loci detection
    • Knott SA, Haley CS (2000) Multitrait least squares for quantitative trait loci detection. Genetics 156, 899-911
    • (2000) Genetics , vol.156 , pp. 899-911
    • Knott, S.A.1    Haley, C.S.2
  • 27
    • 0032725185 scopus 로고    scopus 로고
    • The Tangier disease gene product ABC1 controls the cellular apolipoprotein-mediated lipid removal pathway
    • Lawn RM, Wade DP, Garvin MR, Wang X, Schwartz K, et al. (1999) The Tangier disease gene product ABC1 controls the cellular apolipoprotein-mediated lipid removal pathway. J Clin Invest 104, R25-R31
    • (1999) J Clin Invest , vol.104
    • Lawn, R.M.1    Wade, D.P.2    Garvin, M.R.3    Wang, X.4    Schwartz, K.5
  • 29
    • 18144399354 scopus 로고    scopus 로고
    • Inferring Gene transcriptional modulatory relations: A genetical genomics approach
    • Li H, Lu L, Manly KF, Chesler EJ, Bao L, et al. (2005) Inferring Gene transcriptional modulatory relations: a genetical genomics approach. Hum Mol Genet 14, 1119-1125
    • (2005) Hum Mol Genet , vol.14 , pp. 1119-1125
    • Li, H.1    Lu, L.2    Manly, K.F.3    Chesler, E.J.4    Bao, L.5
  • 30
    • 3042562270 scopus 로고    scopus 로고
    • Genomics, prior probability, and statistical tests of multiple hypotheses
    • Manly KF, Nettleton D, Hwang JT (2004) Genomics, prior probability, and statistical tests of multiple hypotheses. Genome Res 14, 997-1001
    • (2004) Genome Res , vol.14 , pp. 997-1001
    • Manly, K.F.1    Nettleton, D.2    Hwang, J.T.3
  • 32
    • 1842856024 scopus 로고    scopus 로고
    • Combining congenic coverage with gene profiling in search of candidates for blood pressure quantitative trait loci in Dahl rats
    • Moujahidine M, Lambert R, Dutil J, Palijan A, Sivo Z, et al. (2004) Combining congenic coverage with gene profiling in search of candidates for blood pressure quantitative trait loci in Dahl rats. Hypertens Res 27, 203-212
    • (2004) Hypertens Res , vol.27 , pp. 203-212
    • Moujahidine, M.1    Lambert, R.2    Dutil, J.3    Palijan, A.4    Sivo, Z.5
  • 33
    • 32544438941 scopus 로고    scopus 로고
    • EQTL Explorer: Integrated mining of combined genetic linkage and expression experiments
    • Mueller M, Goel A, Thimma M, Dickens NJ, Aitman TJ, et al. (2006) EQTL Explorer: integrated mining of combined genetic linkage and expression experiments. Bioinformatics 22, 509-511
    • (2006) Bioinformatics , vol.22 , pp. 509-511
    • Mueller, M.1    Goel, A.2    Thimma, M.3    Dickens, N.J.4    Aitman, T.J.5
  • 34
    • 0036237051 scopus 로고    scopus 로고
    • Analyses of differential gene expression in genetic hypertensive rats by microarray
    • Okuda T, Sumiya T, Mizutani K, Tago N, Miyata T, et al. (2002) Analyses of differential gene expression in genetic hypertensive rats by microarray. Hypertens Res 25, 249-255
    • (2002) Hypertens Res , vol.25 , pp. 249-255
    • Okuda, T.1    Sumiya, T.2    Mizutani, K.3    Tago, N.4    Miyata, T.5
  • 35
    • 0024517658 scopus 로고
    • An analysis of spontaneous hypertension in spontaneously hypertensive rats by means of new recombinant inbred strains
    • Pravenec M, Klir P, Kren V, Zicha J, Kunes J (1989) An analysis of spontaneous hypertension in spontaneously hypertensive rats by means of new recombinant inbred strains. J Hypertens 7, 217-221
    • (1989) J Hypertens , vol.7 , pp. 217-221
    • Pravenec, M.1    Klir, P.2    Kren, V.3    Zicha, J.4    Kunes, J.5
  • 36
    • 0037219664 scopus 로고    scopus 로고
    • Gene expression profiling in hypertension research: A critical perspective
    • Pravenec M, Wallace C, Aitman TJ, Kurtz TW (2003) Gene expression profiling in hypertension research: a critical perspective. Hypertension 41, 3-8
    • (2003) Hypertension , vol.41 , pp. 3-8
    • Pravenec, M.1    Wallace, C.2    Aitman, T.J.3    Kurtz, T.W.4
  • 37
    • 2342507607 scopus 로고    scopus 로고
    • Genetic analysis of "metabolic syndrome" in the spontaneously hypertensive rat
    • Pravenec M, Zidek V, Landa V, Simakova M, Mlejnek P, et al. (2004) Genetic analysis of "metabolic syndrome" in the spontaneously hypertensive rat. Physiol Res 153 Suppl, S15-S22
    • (2004) Physiol Res , vol.153 , Issue.SUPPL.
    • Pravenec, M.1    Zidek, V.2    Landa, V.3    Simakova, M.4    Mlejnek, P.5
  • 38
    • 0027249921 scopus 로고
    • A gene differentially expressed in the kidney of the spontaneously hypertensive rat cosegregates with increased blood pressure
    • Samani NJ, Lodwick D, Vincent M, Dubay C, Kaiser MA, et al. (1993) A gene differentially expressed in the kidney of the spontaneously hypertensive rat cosegregates with increased blood pressure. J Clin Invest 92, 1099-1103
    • (1993) J Clin Invest , vol.92 , pp. 1099-1103
    • Samani, N.J.1    Lodwick, D.2    Vincent, M.3    Dubay, C.4    Kaiser, M.A.5
  • 39
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, et al. (2003) Genetics of gene expression surveyed in maize, mouse and man. Nature 422, 297-302
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.E.1    Monks, S.A.2    Drake, T.A.3    Lusis, A.J.4    Che, N.5
  • 40
    • 12444259663 scopus 로고    scopus 로고
    • Expression profiling and QTL analysis: A powerful complementary strategy in drug abuse research
    • Spence J, Liang T, Foroud T, Lo D, Carr L (2005) Expression profiling and QTL analysis: a powerful complementary strategy in drug abuse research. Addict Biol 10, 47-51
    • (2005) Addict Biol , vol.10 , pp. 47-51
    • Spence, J.1    Liang, T.2    Foroud, T.3    Lo, D.4    Carr, L.5
  • 41
    • 1142273091 scopus 로고    scopus 로고
    • Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: A unified approach
    • Storey JD, Taylor JE, Siegmund D (2004) Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: a unified approach. J R Stat Soc B 66, 187-205
    • (2004) J R Stat Soc B , vol.66 , pp. 187-205
    • Storey, J.D.1    Taylor, J.E.2    Siegmund, D.3
  • 42
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • USA
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100, 9440-9445
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 44
    • 16444377442 scopus 로고    scopus 로고
    • Identification of hypertension-related genes through an integrated genomic-transcriptomic approach
    • Yagil C, Hubner N, Monti J, Schulz H, Sapojnikov M, et al. (2005) Identification of hypertension-related genes through an integrated genomic-transcriptomic approach. Circ Res 96, 617-625
    • (2005) Circ Res , vol.96 , pp. 617-625
    • Yagil, C.1    Hubner, N.2    Monti, J.3    Schulz, H.4    Sapojnikov, M.5
  • 45
    • 32544453341 scopus 로고    scopus 로고
    • Expression quantitative trait loci analysis of 13 genes in the rat prostate
    • Yamashita S, Wakazono K, Nomoto T, Tsujino Y, Kuramoto T, et al. (2005) Expression quantitative trait loci analysis of 13 genes in the rat prostate. Genetics 171, 1231-1238
    • (2005) Genetics , vol.171 , pp. 1231-1238
    • Yamashita, S.1    Wakazono, K.2    Nomoto, T.3    Tsujino, Y.4    Kuramoto, T.5
  • 46
    • 0042856391 scopus 로고    scopus 로고
    • Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
    • Yvert G, Brem RB, Whittle J, Akey JM, Foss E, et al. (2003) Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nat Genet 35, 57-64
    • (2003) Nat Genet , vol.35 , pp. 57-64
    • Yvert, G.1    Brem, R.B.2    Whittle, J.3    Akey, J.M.4    Foss, E.5
  • 47
    • 0242666144 scopus 로고    scopus 로고
    • Generation of fertile cloned rats by regulating oocyte activation
    • Zhou Q, Renard JP, Le Friec G, Brochard V, Beaujean N, et al. (2003) Generation of fertile cloned rats by regulating oocyte activation. Science 302, 1179
    • (2003) Science , vol.302 , pp. 1179
    • Zhou, Q.1    Renard, J.P.2    Le Friec, G.3    Brochard, V.4    Beaujean, N.5
  • 48
    • 10744225849 scopus 로고    scopus 로고
    • A SNP map of the rat genome generated from cDNA sequences
    • Zimdahl H, Nyakatura G, Brandt P, Schulz H, Hummel O, et al. (2004) A SNP map of the rat genome generated from cDNA sequences. Science 303, 807
    • (2004) Science , vol.303 , pp. 807
    • Zimdahl, H.1    Nyakatura, G.2    Brandt, P.3    Schulz, H.4    Hummel, O.5


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