Expression quantitative trait loci analysis of 13 genes in the rat prostate

Genetics

Volumn 171, Issue 3, 2005, Pages 1231-1238

  Yamashita, Satoshi ^a   Wakazono, Kuniko ^a   Nomoto, Tomoko ^a   Tsujino, Yoshimi ^a   Kuramoto, Takashi ^a   Ushijima, Toshikazu ^a  

^a NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALDEHYDE DEHYDROGENASE ISOENZYME 1; ALDEHYDE REDUCTASE 1; BONE MORPHOGENETIC PROTEIN 6; CELL CYCLE PROTEIN; CIS ACTING ELEMENT; CONTACTIN 6; CYCLIN DEPENDENT KINASE INHIBITOR 1A; GROWTH HORMONE RECEPTOR; KUPFFER CELL RECEPTOR; NUCLEAR PROTEIN 1; PHOSPHOSERINE AMINOTRANSFERASE 1; PLEIOTROPHIN; PROTEIN; PROTEIN D JUN; REGULATOR PROTEIN; RTI CLASS IB PROTEIN; SYNAPTIC VESICLE GLYCOPROTEIN 2 B; UNCLASSIFIED DRUG;

5' UNTRANSLATED REGION; ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; BACKCROSSING; CANCER SUSCEPTIBILITY; CELL CYCLE REGULATION; CHROMOSOME; CONGENIC STRAIN; CONTROLLED STUDY; FEMALE; GENE EXPRESSION REGULATION; GENE MAPPING; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETIC SUSCEPTIBILITY; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROSTATE CANCER; QUANTITATIVE ANALYSIS; QUANTITATIVE TRAIT LOCUS; RAT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; X CHROMOSOME;

ANIMALS; CYCLIN-DEPENDENT KINASE INHIBITOR P21; GENE EXPRESSION PROFILING; MALE; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PROSTATE; QUANTITATIVE TRAIT LOCI; RATS; RATS, INBRED ACI; RATS, INBRED BN; RATS, INBRED BUF; RATS, INBRED F344;

ANIMALIA;

EID: 32544453341     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.038174     Document Type: Article

References (32)

1. ABE, M., S. YAMASHITA, T. KURAMOTO, Y. HIRAYAMA, T. TSUKAMOTO et al., 2003 Global expression analysis of N-methyl-N′-nitro-N-nitrosoguanidine- induced rat stomach carcinomas using oligonucleotide microarrays. Carcinogenesis 24: 861-867.
2. ASAMOTO, M., N. HOKAIWADO, Y. M. CHO, S. TAKAHASHI, Y. IKEDA et al., 2001 Prostate carcinomas developing in transgenic rats with SV40 T antigen expression under probasin promoter control are strictly androgen dependent. Cancer Res. 61: 4693-4700.
3. BAIER, L. J., P. A. PERMANA, X. YANG, R. E. PRATLEY, R. L. HANSON et al., 2000 A calpain-10 gene polymorphism is associated with reduced muscle mRNA levels and insulin resistance. J. Clin. Invest. 106: R69-R73.
4. BREM, R. B., G. YVERT, R. CLINTON and L. KRUGLYAK, 2002 Genetic dissection of transcriptional regulation in budding yeast. Science 296: 752-755.
5. CHEUNG, V. G., L. K. CONLIN, T. M. WEBER, M. ARCARO, K. Y. JEN et al., 2003 Natural variation in human gene expression assessed in lymphoblastoid cells. Nat. Genet. 33: 422-425.
6. DANIELS, G. R., and P. L. DEININGER, 1985 Repeat sequence families derived from mammalian tRNA genes. Nature 317: 819-822.
7. DONG, J. T., P. W. LAMB, C. W. RINKER-SCHAEFFER, J. VUKANOVIC, T. ICHIKAWA et al., 1995 KAI1, a metastasis suppressor gene for prostate cancer on human chromosome 11p11.2. Science 268: 884-886.
8. EL-DEIRY, W. S., T. TOKINO, T. WALDMAN, J. D. OLINER, V. E. VELCULESCU et al., 1995 Topological control of p21WAF1/ CIP1 expression in normal and neoplastic tissues. Cancer Res 55: 2910-2919.
9. FEROZE-MERZOUG, F., I. M. BERQUIN, J. DEY and Y. Q. CHEN, 2002 Peptidylprolyl isomerase A (PPIA) as a preferred internal control over GAPDH and beta-actin in quantitative RNA analyses. BioTechniques 32: 776-778, 780, 782.
10. GREENBERG, N. M., F. DEMAYO, M. J. FINEGOLD, D. MEDINA, W. D. TILLEY et al., 1995 Prostate cancer in a transgenic mouse. Proc. Natl. Acad. Sci. USA 92: 3439-3443.
11. HUBNER, N., C. A. WALLACE, H. ZIMDAHL, E. PETRETTO, H. SCHULZ et al., 2005 Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease. Nat. Genet. 37: 243-253.
12. INAGUMA, S., S. TAKAHASHI, H. OHNISHI, S. SUZUKI, Y. M. CHO et al., 2003 High susceptibility of the ACI and spontaneously hypertensive rat (SHR) strains to 2-amino-1-methyl-6-phenylimidazo[4,5-b] pyridine (PhIP) prostate carcinogenesis. Cancer Sci. 94: 974-979.
13. ISAACS, J. T., 1984 The aging ACI/Seg versus Copenhagen male rat as a model system for the study of prostatic carcinogenesis. Cancer Res. 44: 5785-5796.
14. KIRST, M., C. J. BASTEN, A. A. MYBURG, Z-B. ZENG and R. R. SEDEROFF, 2005 Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid. Genetics 169: 2295-2303.
15. KURAMOTO, T., K. KITADA, T. INUI, Y. SASAKI, K. ITO et al., 2001 Attractin/ mahogany/zitter plays a critical role in myelination of the central nervous system. Proc. Natl. Acad. Sci. USA 98: 559-564.
16. KURAMOTO, T., K. MORIMURA, S. YAMASHITA, E. OKOCHI, N. WATANABE et al., 2002 Etiology-specific gene expression profiles in rat mammary carcinomas. Cancer Res. 62: 3592-3597.
17. LANDER, E., and L. KRUGLYAK, 1995 Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nat. Genet. 11: 241-247.
18. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
19. LEE, P. D., R. SLADEK, C. M. GREENWOOD and T. J. HUDSON, 2002 Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res. 12: 292-297.
20. MCKINNON, R. D., T. M. SHINNICK and J. G. SUTCLIFFE, 1986 The neuronal identifier element is a cis-acting positive regulator of gene expression. Proc. Natl. Acad. Sci. USA 83: 3751-3755.
21. MONKS, S. A., A. LEONARDSON, H. ZHU, P. CUNDIFF, P. PIETRUSIAK et al., 2004 Genetic inheritance of gene expression in human cell lines. Am. J. Hum. Genet. 75: 1094-1105.
22. MORLEY, M., C. M. MOLONY, T. M. WEBER, J. L. DEVLIN, K. G. EWENS et al., 2004 Genetic analysis of genome-wide variation in human gene expression. Nature 430: 743-747.
23. OSBOURN, J. K., P. L. WEISSBERG and C. M. SHANAHAN, 1995 A regulatory element downstream of the rat SM22 alpha gene transcription start point enhances reporter gene expression in vascular smooth muscle cells. Gene 154: 249-253.
24. PARK, S. H., Y. S. LEE, Y. OSAWA, M. HACHIYA and M. AKASHI, 2002 Hsp25 regulates the expression of p21(Waf1/Cip1/ Sdi1) through multiple mechanisms. J. Biochem. 131: 869-875.
25. RISHI, A. K., C. K. HSU, X. S. LI, A. HUSSAIN, T. M. GERALD et al., 1997 Transcriptional repression of the cyclin-dependent kinase inhibitor p21WAF1/CIP1 gene mediated by cis elements present in the 3′-untranslated region. Cancer Res. 57: 5129-5136.
26. SCHADT, E. E., S. A. MONKS, T. A. DRAKE, A. J. LUSIS, N. CHE et al., 2003 Genetics of gene expression surveyed in maize, mouse and man. Nature 422: 297-302.
27. SERREZE, D. V., H. D. CHAPMAN, D. S. VARNUM, M. S. HANSON, P. C. REIFSNYDER et al., 1996 B lymphocytes are essential for the initiation of T cell-mediated autoimmune diabetes: analysis of a new "speed congenic" stock of NOD.Ig mu null mice. J. Exp. Med. 184: 2049-2053.
28. USHIJIMA, T., H. MAKINO, M. NAKAYASU, S. AONUMA, M. TAKEUCHI et al., 1994 Presence of p53 mutations in 3Y1-B clone 1-6: a rat cell line widely used as a normal immortalized fibroblast. Jpn. J. Cancer Res. 85: 455-458.
29. WEISINGER, G., M. GAVISH, C. MAZURIKA and O. ZINDER, 1999 Transcription of actin, cyclophilin and glyceraldehyde phosphate dehydrogenase genes: tissue- and treatment-specificity. Biochim. Biophys. Acta 1446: 225-232.
30. YAMASHITA, S., T. NOMOTO, T. OHTA, M. OHKI, T. SUGIMURA et al., 2003 Differential expression of genes related to levels of mucosal cell proliferation among multiple rat strains by using oligonucleotide microarrays. Mamm. Genome 14: 845-852.
31. YAMASHITA, S., T. NOMOTO, M. ABE, M. TATEMATSU, T. SUGIMURA et al., 2004 Persistence of gene expression changes in stomach mucosae induced by short-term N-methyl-N′-nitro-N-nitrosoguanidine treatment and their presence in stomach cancers. Mutat. Res. 549: 185-193.
32. YAMASHITA, S., S. SUZUKI, T. NOMOTO, Y. KONDO, K. WAKAZONO et al., 2005 Linkage and microarray analyses of susceptibility genes in ACI/Seg rats: a model for prostate cancers in the aged. Cancer Res. 65: 2610-2616.