Solution structure of the severe acute respiratory syndrome-coronavirus heptad repeat 2 domain in the prefusion state

Journal of Biological Chemistry

Volumn 281, Issue 17, 2006, Pages 11965-11971

  Hakansson McReynolds, Susanna ^a   Jiang, Shaokai ^a   Rong, Lijun ^a   Caffrey, Michael ^a  

^a UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL MEMBRANES; CONFORMATIONS; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE; VIRUSES; X RAY CRYSTALLOGRAPHY;

CORONAVIRUS ENVELOPE; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS (SARS-COV); STRUCTURAL INFORMATION; VIRAL MEMBRANE FUSION;

PROTEINS;

GLYCOPROTEIN; TRIFLUOROETHANOL; VIRUS ENVELOPE PROTEIN; VIRUS FUSION PROTEIN;

ARTICLE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN STRUCTURE; SARS CORONAVIRUS; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; HEMAGGLUTININS, VIRAL; HUMANS; MEMBRANE GLYCOPROTEINS; MODELS, MOLECULAR; PROTEIN CONFORMATION; REPETITIVE SEQUENCES, AMINO ACID; SARS VIRUS; SOLUBILITY; VIRAL ENVELOPE PROTEINS; VIRAL FUSION PROTEINS;

CORONAVIRUS; SARS CORONAVIRUS;

EID: 33744953240     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M601174200     Document Type: Article

References (64)

1. Stadler, K., Masignani, V., Eickmann, M., Becker, S., Abrignani, S., Klenk, H. D., and Rappuoli, R. (2003) Nat. Rev. Microbiol. 1, 209-218
2. Drosten, C., Preiser, W., Gunther, S., Schmitz, H., and Doerr, H. W. (2003) Trends Mol. Med. 9, 325-327
3. Ksiazek, T. G., Erdman, D., Goldsmith, C. S., Zaki, S. R., Peret, T., Emery, S., Tong, S., Urbani, C., Comer, J. A., Lim, W., Rollin, P. E., Dowell, S. F., Ling, A. E., Humphrey, C. D., Shieh, W. J., Guarner, J., Paddock, C. D., Rota, P., Fields, B., DeRisi, J., Yang, J. Y., Cox, N., Hughes, J. M., LeDuc, J. W., Bellini, W. J., and Anderson, L. J. (2003) N. Engl. J. Med. 348, 1953-1966
4. Marra, M. A., Jones, S. J., Astell, C. R., Holt, R. A., Brooks-Wilson, A., Butterfield, Y. S., Khattra, J., Asano, J. K., Barber, S. A., Chan, S. Y., Cloutier, A., Coughlin, S. M., Freeman, D., Girn, N., Griffith, O. L., Leach, S. R., Mayo, M., McDonald, H., Montgomery, S. B., Pandoh, P. K., Petrescu, A. S., Robertson, A. G., Schein, J. E., Siddiqui, A., Smailus, D. E., Stott, J. M., Yang, G. S., Plummer, F., Andonov, A., Artsob, H., Bastien, N., Bernard, K., Booth, T. F., Bowness, D., Czub, M., Drebot, M., Fernando, L., Flick, R., Garbutt, M., Gray, M., Grolla, A., Jones, S., Feldmann, H., Meyers, A., Kabani, A., Li, Y., Normand, S., Stroher, U., Tipples, G. A., Tyler, S., Vogrig, R., Ward, D., Watson, B., Brunham, R. C., Krajden, M., Petric, M., Skowronski, D. M., Upton, C., and Roper, R. L. (2003) Science 300, 1399-1404
5. Rota, P. A., Oberste, M. S., Monroe, S. S., Nix, W. A., Campagnoli, R., Icenogle, J. P., Penaranda, S., Bankamp, B., Maher, K., Chen, M. H., Tong, S., Tamin, A., Lowe, L., Frace, M., DeRisi, J. L., Chen, Q., Wang, D., Erdman, D. D., Peret, T. C., Burns, C., Ksiazek, T. G., Rollin, P. E., Sanchez, A., Liffick, S., Holloway, B., Limor, J., McCaustland, K., Olsen-Rasmussen, M., Fouchier, R., Gunther, S., Osterhaus, A. D., Drosten, C., Pallansch, M. A., Anderson, L. J., and Bellini, W. J. (2003) Science 300, 1394-1399
6. Hernandez, L. D., Hoffman, L. R., Wolfsberg, T. G., and White, J. M. (1996) Annu. Rev. Cell Dev. Biol. 12, 627-661
7. Eckert, D. M., and Kim, P. S. (2001) Annu. Rev. Biochem. 70, 777-810
8. Lamb, R. A., Paterson, R. G., and Jardetzky, T. S. (2006) Virology 344, 30-37
9. Gallagher, T. M., and Buchmeier, M. J. (2001) Virology 279, 371-374
10. Gallo, S. A., Finnegan, C. M., Viard, M., Raviv, Y., Dimitrov, A., Rawat, S. S., Puri, A., Durell, S., and Blumenthal, R. (2003) Biochim. Biophys. Acta 1614, 36-50
11. Hofmann, H., and Pohlmann, S. (2004) Trends Microbiol. 12, 466-472
12. Li, W., Moore, M. J., Vasilieva, N., Sui, J., Wong, S. K., Berne, M. A., Somasundaran, M., Sullivan, J. L., Luzuriaga, K., Greenough, T. C., Choe, H., and Farzan, M. (2003) Nature 426, 450-454
13. Kuhn, J. H., Li, W., Choe, H., and Farzan, M. (2004) Cell. Mol. Life Sci. 61, 2738-2743
14. Chan, D. C., Fass, D., Berger, J. M., and Kim, P. S. (1997) Cell 89, 263-273
15. Tan, K., Liu, J., Wang, J., Shen, S., and Lu, M. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 12303-12308
16. Weissenhorn, W., Dessen, A., Harrison, S. C., Skehel, J. J., and Wiley, D. C. (1997) Nature 387, 426-430
17. Caffrey, M., Cai, M., Kaufman, J., Stahl, S. J., Wingfield, P. T., Covell, D. G., Gronenborn, A. M., and Clore, G. M. (1998) EMBO J. 17, 4572-4584
18. Malashkevich, V. N., Chan, D. C., Chutkowski, C. T., and Kim, P. S. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 9134-9139
19. Yang, Z. N., Mueser, T. C., Kaufman, J., Stahl, S. J., Wingfield, P. T., and Hyde, C. C. (1999) J. Struct. Biol. 126, 131-144
20. Wilson, I. A., Skehel, J. J., and Wiley, D. C. (1981) Nature 289, 366-373
21. Weissenhorn, W., Carfi, A., Lee, K. H., Skehel, J. J., and Wiley, D. C. (1998) Mol. Cell 2, 605-616
22. Malashkevich, V. N., Schneider, B. J., McNally, M. L., Milhollen, M. A., Pang, J. X., and Kim, P. S. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 2662-2667
23. Xu, Y., Liu, Y., Lou, Z., Qin, L., Li, X., Bai, Z., Pang, H., Tien, P., Gao, G. F., and Rao, Z. (2004) J. Biol. Chem. 279, 30514-30522
24. Xu, Y., Lou, Z., Liu, Y., Pang, H., Tien, P., Gao, G. F., and Rao, Z. (2004) J. Biol. Chem. 279, 49414-49419
25. Supekar, V. M., Bruckmann, C., Ingallinella, P., Bianchi, E., Pessi, A., and Carfi, A. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 17958-17963
26. Yin, H. S., Paterson, R. G., Wen, X., Lamb, R. A., and Jardetzky, T. S. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 9288-9293
27. Carr, C. M., and Kim, P. S. (1993) Cell 73, 823-832
28. Bullough, P. A., Hughson, F. M., Skehel, J. J., and Wiley, D. C. (1994) Nature 371, 37-43
29. Yin, H. S., Wen, X., Paterson, R. G., Lamb, R. A., and Jardetzky, T. S. (2006) Nature 439, 38-44
30. Wild, C., Oas, T., McDanal, C., Bolognesi, D., and Matthews, T. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 10537-10541
31. Wild, C. T., Shugars, D. C., Greenwell, T. K., McDanal, C. B., and Matthews, T. J. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 9770-9774
32. Furuta, R. A., Wild, C. T., Weng, Y., and Weiss, C. D. (1998) Nat. Struct. Biol. 5, 276-279
33. Russell, C. J., Jardetzky, T. S., and Lamb, R. A. (2001) EMBO J. 20, 4024-4034
34. Kilby, J. M., Hopkins, S., Venetta, T. M., DiMassimo, B., Cloud, G. A., Lee, J. Y., Alldredge, L., Hunter, E., Lambert, D., Bolognesi, D., Matthews, T., Johnson, M. R., Nowak, M. A., Shaw, G. M., and Saag, M. S. (1998) Nat. Med. 4, 1302-1307
35. Kilby, J. M., Lalezari, J. P., Eron, J. J., Carlson, M., Cohen, C., Arduino, R. C., Goodgame, J. C., Gallant, J. E., Volberding, P., Murphy, R. L., Valentine, F., Saag, M. S., Nelson, E. L., Sista, P. R., and Dusek, A. (2002) AIDS Res. Hum. Retroviruses 18, 685-693
36. Bosch, B. J., van der Zee, R., de Haan, C. A., and Rottier, P. J. (2003) J. Virol. 77, 8801-8811
37. Bosch, B. J., Martina, B. E., Van Der Zee, R., Lepault, J., Haijema, B. J., Versluis, C., Heck, A. J., De Groot, R., Osterhaus, A. D., and Rottier, P. J. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 8455-8460
38. Liu, S., Xiao, G., Chen, Y., He, Y., Niu, J., Escalante, C. R., Xiong, H., Farmar, J., Debnath, A. K., Tien, P., and Jiang, S. (2004) Lancet 363, 938-947
39. Zhu, J., Xiao, G., Xu, Y., Yuan, F., Zheng, C., Liu, Y., Yan, H., Cole, D. K., Bell, J. I., Rao, Z., Tien, P., and Gao, G. F. (2004) Biochem. Biophys. Res. Commun. 319, 283-288
40. Tripet, B., Howard, M. W., Jobling, M., Holmes, R. K., Holmes, K. V., and Hodges, R. S. (2004) J. Biol. Chem. 279, 20836-20849
41. Huth, J. R., Bewley, C. A., Jackson, B. M., Hinnebusch, A. G., Clore, G. M., and Gronenborn, A. M. (1997) Protein Sci. 6, 2359-2364
42. Dougherty, W. G., Parks, T. D., Cary, S. M., Bazan, J. F., and Fletterick, R. J. (1989) Virology 172, 302-310
43. Marley, J., Lu, M., and Bracken, C. (2001) J. Biomol. NMR 20, 71-75
44. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
45. Caffrey, M., Cai, M., Kaufman, J., Stahl, S. J., Wingfield, P. T., Gronenborn, A. M., and Clore, G. M. (1997) J. Mol. Biol. 271, 819-826
46. Jiang, S., and Caffrey, M. (2002) J. Biomol. NMR 24, 365-366
47. Kuboniwa, H., Grzesiek, S., Delaglio, F., and Bax, A. (1994) J. Biomol. NMR 4, 871-878
48. Stuart, A. C., Borzilleri, K. A., Withka, J. M., and Palmer, A. G. (1999) J. Am. Chem. Soc. 121, 5346-5347
49. Hwang, T. L., van Zijl, P. C., and Mori, S. (1998) J. Biomol. NMR 11, 221-226
50. Cavanagh, J., Fairbrother, W., Palmer, A., and Skeleton, N. (1996) Protein NMR Spectroscopy Principles and Practice, Academic Press, San Diego
51. Bax, A., Vuister, G. W., Grzesiek, S., Delaglio, F., Wang, A. C., Tschudin, R., and Zhu, G. (1994) Methods Enzymol. 239, 79-105
52. Cornilescu, G., Delaglio, F., and Bax, A. (1999) J. Biomol. NMR 13, 289-302
53. Stein, E. G., Rice, L. M., and Brunger, A. T. (1997) J. Magn. Reson. 124, 154-164
54. Nilges, M., Clore, G. M., and Gronenborn, A. M. (1988) FEBS Lett. 229, 317-324
55. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
56. Kuszewski, J., Gronenborn, A. M., and Clore, G. M. (1996) Protein Sci. 5, 1067-1080
57. Caffrey, M. (2001) Biochim. Biophys. Acta 1536, 116-122
58. Laskowski, R. A., MacArther, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
59. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graph. 14, 51-55
60. Lindhout, D. A., Litowski, J. R., Mercier, P., Hodges, R. S., and Sykes, B. D. (2004) Biopolymers 75, 367-375
61. Otting, G., and Wuthrich, K. (1990) Q. Rev. Biophys. 23, 39-96
62. Crick, F. H. C. (1953) Acta Crystallogr. 6, 689-697
63. Lupas, A. (1996) Trends Biochem. Sci 21, 375-382
64. Wishart, D. S., and Case, D. A. (2001) Methods Enzymol. 338, 3-34