-
1
-
-
0021769953
-
DNA sequence and transcription of the region upstream of the E. coli gyrB gene
-
Adachi T., Mizuuchi K., Menzel R., and Gellert M. DNA sequence and transcription of the region upstream of the E. coli gyrB gene. Nucleic Acids Res. 12 16 (1984) 6389-6395
-
(1984)
Nucleic Acids Res.
, vol.12
, Issue.16
, pp. 6389-6395
-
-
Adachi, T.1
Mizuuchi, K.2
Menzel, R.3
Gellert, M.4
-
2
-
-
0020671929
-
Autoregulation of the Escherichia coli crp gene: CRP is a transcriptional repressor for its own gene
-
Aiba H. Autoregulation of the Escherichia coli crp gene: CRP is a transcriptional repressor for its own gene. Cell 32 1 (1983) 141-149
-
(1983)
Cell
, vol.32
, Issue.1
, pp. 141-149
-
-
Aiba, H.1
-
3
-
-
0021958061
-
Transcription of the Escherichia coli adenylate cyclase gene is negatively regulated by cAMP-cAMP receptor protein
-
Aiba H. Transcription of the Escherichia coli adenylate cyclase gene is negatively regulated by cAMP-cAMP receptor protein. J. Biol. Chem. 260 5 (1985) 3063-3070
-
(1985)
J. Biol. Chem.
, vol.260
, Issue.5
, pp. 3063-3070
-
-
Aiba, H.1
-
4
-
-
0021100981
-
Cloning and promoter analysis of the Escherichia coli adenylate cyclase gene
-
Aiba H., Kawamukai M., and Ishihama A. Cloning and promoter analysis of the Escherichia coli adenylate cyclase gene. Nucleic Acids Res. 11 11 (1983) 3451-3465
-
(1983)
Nucleic Acids Res.
, vol.11
, Issue.11
, pp. 3451-3465
-
-
Aiba, H.1
Kawamukai, M.2
Ishihama, A.3
-
5
-
-
0036305955
-
Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters
-
Aiyar S., McLeod S., Ross W., Hirvonen C., Thomas M., Johnson R., and Gourse R. Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. J. Mol. Biol. 316 3 (2002) 501-516
-
(2002)
J. Mol. Biol.
, vol.316
, Issue.3
, pp. 501-516
-
-
Aiyar, S.1
McLeod, S.2
Ross, W.3
Hirvonen, C.4
Thomas, M.5
Johnson, R.6
Gourse, R.7
-
6
-
-
0032716841
-
Growth-phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Ali Azam T., Iwata A., Nishimura A., Ueda S., and Ishihama A. Growth-phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181 20 (1999) 6361-6370
-
(1999)
J. Bacteriol.
, vol.181
, Issue.20
, pp. 6361-6370
-
-
Ali Azam, T.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
7
-
-
0000324940
-
Purification of and properties of the cyclic adenosine 3′,5′-monophosphate receptor protein which mediates cyclic adenosine 3′,5′-monophosphate-dependent gene transcription in Escherichia coli
-
Anderson W., Schneider A., Emmer M., Perlman R., and Pasta I. Purification of and properties of the cyclic adenosine 3′,5′-monophosphate receptor protein which mediates cyclic adenosine 3′,5′-monophosphate-dependent gene transcription in Escherichia coli. J. Biol. Chem. 246 19 (1971) 5929-5937
-
(1971)
J. Biol. Chem.
, vol.246
, Issue.19
, pp. 5929-5937
-
-
Anderson, W.1
Schneider, A.2
Emmer, M.3
Perlman, R.4
Pasta, I.5
-
8
-
-
0031893742
-
Activation of Escherichia coli rRNA transcription by Fis during a growth cycle
-
Appleman J., Ross W., Salomon J., and Gourse R. Activation of Escherichia coli rRNA transcription by Fis during a growth cycle. J. Bacteriol. 180 6 (1998) 1525-1532
-
(1998)
J. Bacteriol.
, vol.180
, Issue.6
, pp. 1525-1532
-
-
Appleman, J.1
Ross, W.2
Salomon, J.3
Gourse, R.4
-
9
-
-
0023430342
-
Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli
-
Balke V., and Gralla J. Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J. Bacteriol. 169 10 (1987) 4499-4506
-
(1987)
J. Bacteriol.
, vol.169
, Issue.10
, pp. 4499-4506
-
-
Balke, V.1
Gralla, J.2
-
10
-
-
0026620949
-
Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
-
Ball C., Osuna R., Ferguson K., and Johnson R. Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J. Bacteriol. 174 24 (1992) 8043-8056
-
(1992)
J. Bacteriol.
, vol.174
, Issue.24
, pp. 8043-8056
-
-
Ball, C.1
Osuna, R.2
Ferguson, K.3
Johnson, R.4
-
11
-
-
0020415825
-
Regulation of adenylate cyclase synthesis in Escherichia coli: studies with cya-lac operon and protein fusion strains
-
Bankaitis V., and Bassford Jr. P. Regulation of adenylate cyclase synthesis in Escherichia coli: studies with cya-lac operon and protein fusion strains. J. Bacteriol. 151 3 (1982) 1346-1357
-
(1982)
J. Bacteriol.
, vol.151
, Issue.3
, pp. 1346-1357
-
-
Bankaitis, V.1
Bassford Jr., P.2
-
12
-
-
1842506160
-
Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes
-
Barnard A., Wolfe A., and Busby S. Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomes. Curr. Opin. Microbiol. 7 2 (2004) 102-108
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, Issue.2
, pp. 102-108
-
-
Barnard, A.1
Wolfe, A.2
Busby, S.3
-
13
-
-
84860513120
-
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
-
Batt G., Ropers D., de Jong H., Geiselmann J., Mateescu R., Page M., and Schneider D. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. Bioinformatics 21 Suppl_1 (2005) i19-i28
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Batt, G.1
Ropers, D.2
de Jong, H.3
Geiselmann, J.4
Mateescu, R.5
Page, M.6
Schneider, D.7
-
14
-
-
0000816797
-
Elastic model of supercoiling
-
Benham C. Elastic model of supercoiling. Proc. Natl. Acad. Sci. U.S.A. 74 6 (1977) 2397-2401
-
(1977)
Proc. Natl. Acad. Sci. U.S.A.
, vol.74
, Issue.6
, pp. 2397-2401
-
-
Benham, C.1
-
15
-
-
0005586873
-
Torsional stress and local denaturation in supercoiled DNA
-
Benham C. Torsional stress and local denaturation in supercoiled DNA. Proc. Natl. Acad. Sci. U.S.A. 76 8 (1979) 3870-3874
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, Issue.8
, pp. 3870-3874
-
-
Benham, C.1
-
16
-
-
0028815976
-
The transcriptional activator protein Fis: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter
-
Bokal A., Ross W., and Gourse R. The transcriptional activator protein Fis: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter. J. Mol. Biol. 245 3 (1995) 197-207
-
(1995)
J. Mol. Biol.
, vol.245
, Issue.3
, pp. 197-207
-
-
Bokal, A.1
Ross, W.2
Gourse, R.3
-
17
-
-
0003796783
-
Modulation of chemical composition and other parameters of the cell by growth rate
-
Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D. C.
-
Bremer H., and Dennis P. Modulation of chemical composition and other parameters of the cell by growth rate. In: Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington D. C. 1553-1569
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1553-1569
-
-
Bremer, H.1
Dennis, P.2
-
18
-
-
0001978472
-
The CAP modulon
-
Lin E., and Lynchs A. (Eds), R.G. Landes, New-York Ch. 12
-
Busby S., and Kolb A. The CAP modulon. In: Lin E., and Lynchs A. (Eds). Regulation of Gene Expression in Escherichia coli (1996), R.G. Landes, New-York 255-279 Ch. 12
-
(1996)
Regulation of Gene Expression in Escherichia coli
, pp. 255-279
-
-
Busby, S.1
Kolb, A.2
-
19
-
-
85194582988
-
-
Casey, R., de Jong, H., Gouzé, J.-L., 2005. Piecewise-linear models of genetic regulatory networks: equilibria and their stability. J. Math. Biol., in press.
-
-
-
-
20
-
-
0036069537
-
Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model
-
Chang D., Smalley D., and Conway T. Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol. Microbiol. 45 2 (2002) 289-306
-
(2002)
Mol. Microbiol.
, vol.45
, Issue.2
, pp. 289-306
-
-
Chang, D.1
Smalley, D.2
Conway, T.3
-
21
-
-
0027457409
-
Global regulation of gene expression in Escherichia coli
-
Chuang S., Daniels D., and Blattner F. Global regulation of gene expression in Escherichia coli. J. Bacteriol. 175 7 (1993) 2026-2036
-
(1993)
J. Bacteriol.
, vol.175
, Issue.7
, pp. 2026-2036
-
-
Chuang, S.1
Daniels, D.2
Blattner, F.3
-
22
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: a literature review
-
de Jong H. Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9 1 (2002) 69-105
-
(2002)
J. Comput. Biol.
, vol.9
, Issue.1
, pp. 69-105
-
-
de Jong, H.1
-
23
-
-
1242345225
-
Qualitative simulation of the initiation of sporulation in Bacillus subtilis
-
de Jong H., Geiselmann J., Batt G., Hernandez C., and Page M. Qualitative simulation of the initiation of sporulation in Bacillus subtilis. Bull. Math. Biol. 66 2 (2004) 261-299
-
(2004)
Bull. Math. Biol.
, vol.66
, Issue.2
, pp. 261-299
-
-
de Jong, H.1
Geiselmann, J.2
Batt, G.3
Hernandez, C.4
Page, M.5
-
24
-
-
0345269975
-
Genetic Network Analyzer: qualitative simulation of genetic regulatory networks
-
de Jong H., Geiselmann J., Hernandez C., and Page M. Genetic Network Analyzer: qualitative simulation of genetic regulatory networks. Bioinformatics 19 (2003) 336-344
-
(2003)
Bioinformatics
, vol.19
, pp. 336-344
-
-
de Jong, H.1
Geiselmann, J.2
Hernandez, C.3
Page, M.4
-
25
-
-
1242333310
-
Qualitative simulation of genetic regulatory networks using piecewise-linear models
-
de Jong H., Gouzé J.-L., Hernandez C., Page M., Sari T., and Geiselmann J. Qualitative simulation of genetic regulatory networks using piecewise-linear models. Bull. Math. Biol. 66 2 (2004) 301-340
-
(2004)
Bull. Math. Biol.
, vol.66
, Issue.2
, pp. 301-340
-
-
de Jong, H.1
Gouzé, J.-L.2
Hernandez, C.3
Page, M.4
Sari, T.5
Geiselmann, J.6
-
26
-
-
85194576568
-
-
de Jong, H., Ropers, D., 2005. Qualitative approaches towards the analysis of genetic regulatory networks. In: Szallasi, Z., Periwal, V., Stelling, J., (Eds.), System Modeling in Cellular Biology: From Concepts to Nuts and Bolts. MIT Press, Cambridge, MA, in press.
-
-
-
-
27
-
-
10344265937
-
Control of rRNA synthesis in Escherichia coli: a systems biology approach
-
Dennis P., Ehrenberg M., and Bremer H. Control of rRNA synthesis in Escherichia coli: a systems biology approach. Microbiol Mol Biol Rev 68 4 (2004) 639-668
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, Issue.4
, pp. 639-668
-
-
Dennis, P.1
Ehrenberg, M.2
Bremer, H.3
-
28
-
-
0025250502
-
Bacterial topoisomerases and the control of DNA supercoiling
-
Drlica K. Bacterial topoisomerases and the control of DNA supercoiling. Trends Genet. 6 12 (1990) 433-437
-
(1990)
Trends Genet.
, vol.6
, Issue.12
, pp. 433-437
-
-
Drlica, K.1
-
29
-
-
0024844517
-
Consensus DNA site for the Escherichia coli catabolite gene activator protein (CAP): CAP exhibits a 450-fold higher affinity for the consensus DNA site than for the E. coli lac DNA site
-
Ebright R., Ebright Y., and Gunasekera A. Consensus DNA site for the Escherichia coli catabolite gene activator protein (CAP): CAP exhibits a 450-fold higher affinity for the consensus DNA site than for the E. coli lac DNA site. Nucleic Acids Res. 17 24 (1989) 10295-10305
-
(1989)
Nucleic Acids Res.
, vol.17
, Issue.24
, pp. 10295-10305
-
-
Ebright, R.1
Ebright, Y.2
Gunasekera, A.3
-
30
-
-
0000819850
-
Adenosine 3′:5′-cyclic monophosphate as mediator of catabolite repression in Escherichia coli
-
Epstein W., Rothman-Denes L., and Hesse J. Adenosine 3′:5′-cyclic monophosphate as mediator of catabolite repression in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 72 6 (1975) 2300-2304
-
(1975)
Proc. Natl. Acad. Sci. U.S.A.
, vol.72
, Issue.6
, pp. 2300-2304
-
-
Epstein, W.1
Rothman-Denes, L.2
Hesse, J.3
-
33
-
-
0037973668
-
Why the phosphotransferase system of Escherichia coli escapes diffusion limitation
-
Francke C., Postma P., Westerhoff H., Blom J., and Peletier M. Why the phosphotransferase system of Escherichia coli escapes diffusion limitation. Biophys. J. 85 1 (2003) 612-622
-
(2003)
Biophys. J.
, vol.85
, Issue.1
, pp. 612-622
-
-
Francke, C.1
Postma, P.2
Westerhoff, H.3
Blom, J.4
Peletier, M.5
-
34
-
-
0018731893
-
Effect of carbon sources on the rates of cyclic AMP synthesis, excretion, and degradation, and the ability to produce beta-galactosidase in Escherichia coli
-
Fraser A., and Yamazaki H. Effect of carbon sources on the rates of cyclic AMP synthesis, excretion, and degradation, and the ability to produce beta-galactosidase in Escherichia coli. Can. J. Biochem. 57 8 (1979) 1073-1079
-
(1979)
Can. J. Biochem.
, vol.57
, Issue.8
, pp. 1073-1079
-
-
Fraser, A.1
Yamazaki, H.2
-
35
-
-
14844323127
-
From molecular networks to qualitative cell behavior
-
Gagneur J., and Casari G. From molecular networks to qualitative cell behavior. FEBS Lett. 579 8 (2005) 1867-1871
-
(2005)
FEBS Lett.
, vol.579
, Issue.8
, pp. 1867-1871
-
-
Gagneur, J.1
Casari, G.2
-
36
-
-
0015609281
-
The logical analysis of continuous, non-linear biochemical control networks
-
Glass L., and Kauffman S. The logical analysis of continuous, non-linear biochemical control networks. J. Theor. Biol. 39 1 (1973) 103-129
-
(1973)
J. Theor. Biol.
, vol.39
, Issue.1
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.2
-
37
-
-
0029844676
-
Fis is a regulator of metabolism in Escherichia coli
-
Gonzalez-Gil G., Bringmann P., and Kahmann R. Fis is a regulator of metabolism in Escherichia coli. Mol. Microbiol. 22 1 (1996) 21-29
-
(1996)
Mol. Microbiol.
, vol.22
, Issue.1
, pp. 21-29
-
-
Gonzalez-Gil, G.1
Bringmann, P.2
Kahmann, R.3
-
38
-
-
0037582107
-
Regulation of crp transcription by oscillation between distinct nucleoprotein complexes
-
Gonzalez-Gil G., Kahmann R., and Muskhelishvili G. Regulation of crp transcription by oscillation between distinct nucleoprotein complexes. EMBO J. 17 10 (1998) 2877-2885
-
(1998)
EMBO J.
, vol.17
, Issue.10
, pp. 2877-2885
-
-
Gonzalez-Gil, G.1
Kahmann, R.2
Muskhelishvili, G.3
-
39
-
-
2442655332
-
Transcriptome analysis of CRP-dependent catabolite control of gene expression in Escherichia coli
-
Gosset G., Zhang Z., Nayyar S., Cuevas W., and Saier Jr. M. Transcriptome analysis of CRP-dependent catabolite control of gene expression in Escherichia coli. J. Bacteriol. 186 11 (2004) 3516-3524
-
(2004)
J. Bacteriol.
, vol.186
, Issue.11
, pp. 3516-3524
-
-
Gosset, G.1
Zhang, Z.2
Nayyar, S.3
Cuevas, W.4
Saier Jr., M.5
-
40
-
-
0021700772
-
Bacterial regulation: global regulatory networks
-
Gottesman S. Bacterial regulation: global regulatory networks. Annu. Rev. Genet. 18 18 (1984) 415-441
-
(1984)
Annu. Rev. Genet.
, vol.18
, Issue.18
, pp. 415-441
-
-
Gottesman, S.1
-
41
-
-
0036938728
-
A class of piecewise-linear differential equations arising in biological models
-
Gouzé J.-L., and Sari T. A class of piecewise-linear differential equations arising in biological models. Dynam. Syst. 17 (2003) 299-316
-
(2003)
Dynam. Syst.
, vol.17
, pp. 299-316
-
-
Gouzé, J.-L.1
Sari, T.2
-
42
-
-
0025773408
-
Molecular mechanism of negative autoregulation of Escherichia coli crp gene
-
Hanamura A., and Aiba H. Molecular mechanism of negative autoregulation of Escherichia coli crp gene. Nucleic Acids Res. 19 16 (1991) 4413-4419
-
(1991)
Nucleic Acids Res.
, vol.19
, Issue.16
, pp. 4413-4419
-
-
Hanamura, A.1
Aiba, H.2
-
43
-
-
0026800962
-
A new aspect of transcriptional control of the Escherichia coli crp gene: positive autoregulation
-
Hanamura A., and Aiba H. A new aspect of transcriptional control of the Escherichia coli crp gene: positive autoregulation. Mol. Microbiol. 6 17 (1992) 2489-2497
-
(1992)
Mol. Microbiol.
, vol.6
, Issue.17
, pp. 2489-2497
-
-
Hanamura, A.1
Aiba, H.2
-
44
-
-
0035810698
-
Allosteric regulation of the cAMP receptor protein
-
Harman J. Allosteric regulation of the cAMP receptor protein. Biochim. Biophys. Acta 1547 1 (2001) 1-17
-
(2001)
Biochim. Biophys. Acta
, vol.1547
, Issue.1
, pp. 1-17
-
-
Harman, J.1
-
46
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
Hatfield G., and Benham C. DNA topology-mediated control of global gene expression in Escherichia coli. Annu. Rev. Genet. 36 (2002) 175-203
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 175-203
-
-
Hatfield, G.1
Benham, C.2
-
48
-
-
0000073165
-
Regulation of gene expression during entry into stationary phase
-
Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D.C.
-
Hengge-Aronis R. Regulation of gene expression during entry into stationary phase. In: Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington D.C. 1497-1512
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1497-1512
-
-
Hengge-Aronis, R.1
-
49
-
-
0000291637
-
The general stress response in Escherichia coli
-
Storz G., and Hengge-Aronis R. (Eds), ASM Press, Washington D.C.
-
Hengge-Aronis R. The general stress response in Escherichia coli. In: Storz G., and Hengge-Aronis R. (Eds). Bacterial stress responses (2000), ASM Press, Washington D.C. 161-177
-
(2000)
Bacterial stress responses
, pp. 161-177
-
-
Hengge-Aronis, R.1
-
51
-
-
0035688744
-
Contributions of UP elements and the transcription factor Fis to expression from the seven rrn P1 promoters in Escherichia coli
-
Hirvonen C., Ross W., Wozniak C., Marasco E., Anthony J., Aiyar S., Newburn V., and Gourse R. Contributions of UP elements and the transcription factor Fis to expression from the seven rrn P1 promoters in Escherichia coli. J. Bacteriol. 183 21 (2001) 6305-6314
-
(2001)
J. Bacteriol.
, vol.183
, Issue.21
, pp. 6305-6314
-
-
Hirvonen, C.1
Ross, W.2
Wozniak, C.3
Marasco, E.4
Anthony, J.5
Aiyar, S.6
Newburn, V.7
Gourse, R.8
-
52
-
-
0001175140
-
Morphological and physiological changes during stationary phase
-
Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D.C.
-
Huisman G., Siegele D.A., and Zambrano M.R.K. Morphological and physiological changes during stationary phase. In: Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington D.C. 1672-1682
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1672-1682
-
-
Huisman, G.1
Siegele, D.A.2
Zambrano, M.R.K.3
-
53
-
-
0029906892
-
Down regulation of cAMP production by cAMP receptor protein in Escherichia coli: an assessment of the contributions of transcriptional and posttranscriptional control of adenylate cyclase
-
Inada T., Takahashi H., Mizuno T., and Aiba H. Down regulation of cAMP production by cAMP receptor protein in Escherichia coli: an assessment of the contributions of transcriptional and posttranscriptional control of adenylate cyclase. Mol. Gen. Genet. 253 1-2 (1996) 198-204
-
(1996)
Mol. Gen. Genet.
, vol.253
, Issue.1-2
, pp. 198-204
-
-
Inada, T.1
Takahashi, H.2
Mizuno, T.3
Aiba, H.4
-
54
-
-
0030728648
-
Adaptation of gene expression in stationary phase bacteria
-
Ishihama A. Adaptation of gene expression in stationary phase bacteria. Curr. Opin. Genet. Dev. 7 5 (1997) 582-588
-
(1997)
Curr. Opin. Genet. Dev.
, vol.7
, Issue.5
, pp. 582-588
-
-
Ishihama, A.1
-
55
-
-
0028298782
-
Mechanism of the down-regulation of cAMP receptor protein by glucose in Escherichia coli: role of autoregulation of the crp gene
-
Ishizuka H., Hanamura A., Inada T., and Aiba H. Mechanism of the down-regulation of cAMP receptor protein by glucose in Escherichia coli: role of autoregulation of the crp gene. EMBO J. 13 13 (1994) 3077-3082
-
(1994)
EMBO J.
, vol.13
, Issue.13
, pp. 3077-3082
-
-
Ishizuka, H.1
Hanamura, A.2
Inada, T.3
Aiba, H.4
-
56
-
-
0027376662
-
A lowered concentration of cAMP receptor protein caused by glucose is an important determinant for catabolite repression in Escherichia coli
-
Ishizuka H., Hanamura A., Kunimura T., and Aiba H. A lowered concentration of cAMP receptor protein caused by glucose is an important determinant for catabolite repression in Escherichia coli. Mol. Microbiol. 10 2 (1993) 341-350
-
(1993)
Mol. Microbiol.
, vol.10
, Issue.2
, pp. 341-350
-
-
Ishizuka, H.1
Hanamura, A.2
Kunimura, T.3
Aiba, H.4
-
57
-
-
0033572810
-
Extensive regulation compromises the extent to which DNA gyrase controls DNA supercoiling and growth rate of Escherichia coli
-
Jensen P., Van Der Weijden C., Jensen L., Westerhoff H., and Snoep J. Extensive regulation compromises the extent to which DNA gyrase controls DNA supercoiling and growth rate of Escherichia coli. Eur. J. Biochem. 266 3 (1999) 865-877
-
(1999)
Eur. J. Biochem.
, vol.266
, Issue.3
, pp. 865-877
-
-
Jensen, P.1
Van Der Weijden, C.2
Jensen, L.3
Westerhoff, H.4
Snoep, J.5
-
58
-
-
0020009531
-
Multiple regulation of the activity of adenylate cyclase in Escherichia coli
-
Joseph E., Bernsley C., Guiso N., and Ullmann A. Multiple regulation of the activity of adenylate cyclase in Escherichia coli. Mol. Gen. Genet. 185 2 (1982) 262-268
-
(1982)
Mol. Gen. Genet.
, vol.185
, Issue.2
, pp. 262-268
-
-
Joseph, E.1
Bernsley, C.2
Guiso, N.3
Ullmann, A.4
-
59
-
-
0027476456
-
Synergistic activation of transcription by Escherichia coli cAMP receptor protein
-
Joung J., Le L., and Hochschild A. Synergistic activation of transcription by Escherichia coli cAMP receptor protein. Proc. Natl. Acad. Sci. U.S.A. 90 7 (1993) 3083-3087
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, Issue.7
, pp. 3083-3087
-
-
Joung, J.1
Le, L.2
Hochschild, A.3
-
60
-
-
0036084127
-
The EcoCyc Database
-
Karp P., Riley M., Saier M., Paulsen I., Collado-Vides J., Paley S., Pellegrini-Toole A., Bonavides C., and Gama-Castro S. The EcoCyc Database. Nucleic Acids Res. 30 1 (2002) 56-58
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 56-58
-
-
Karp, P.1
Riley, M.2
Saier, M.3
Paulsen, I.4
Collado-Vides, J.5
Paley, S.6
Pellegrini-Toole, A.7
Bonavides, C.8
Gama-Castro, S.9
-
62
-
-
0022343005
-
Negative regulation of adenylate cyclase gene (cya) expression by cyclic AMP-cyclic AMP receptor protein in Escherichia coli: studies with cya-lac protein and operon fusion plasmids
-
Kawamukai M., Kishimoto J., Utsumi R., Himeno M., Komano T., and Aiba H. Negative regulation of adenylate cyclase gene (cya) expression by cyclic AMP-cyclic AMP receptor protein in Escherichia coli: studies with cya-lac protein and operon fusion plasmids. J. Bacteriol. 164 2 (1985) 872-877
-
(1985)
J. Bacteriol.
, vol.164
, Issue.2
, pp. 872-877
-
-
Kawamukai, M.1
Kishimoto, J.2
Utsumi, R.3
Himeno, M.4
Komano, T.5
Aiba, H.6
-
63
-
-
0000847987
-
Regulation of ribosome synthesis
-
Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D.C.
-
Keener J., and Nomura M. Regulation of ribosome synthesis. In: Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington D.C. 1417-1431
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1417-1431
-
-
Keener, J.1
Nomura, M.2
-
64
-
-
13444262374
-
EcoCyc: a comprehensive database resource for Escherichia coli
-
Keseler I., Collado-Vides J., Gama-Castro S., Ingraham J., Paley S., Paulsen I., Peralta-Gil M., and Karp P. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Res. 33 (2005) D334-D337
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Keseler, I.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
Paulsen, I.6
Peralta-Gil, M.7
Karp, P.8
-
65
-
-
0038027881
-
Molecular interaction maps as information organizers and simulation guides
-
Kohn K. Molecular interaction maps as information organizers and simulation guides. Chaos 11 1 (2001) 84-97
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 84-97
-
-
Kohn, K.1
-
66
-
-
0027383520
-
The stationary phase of the bacterial life cycle
-
Kolter R., Siegele D., and Tormo A. The stationary phase of the bacterial life cycle. Annu. Rev. Microbiol. 47 (1993) 855-874
-
(1993)
Annu. Rev. Microbiol.
, vol.47
, pp. 855-874
-
-
Kolter, R.1
Siegele, D.2
Tormo, A.3
-
67
-
-
0035206064
-
The organization of metabolic reaction networks: III. Application for diauxic growth on glucose and lactose
-
Kremling A., Bettenbrock K., Laube B., Jahreis K., Lengeler J., and Gilles E. The organization of metabolic reaction networks: III. Application for diauxic growth on glucose and lactose. Metab. Eng. 3 4 (2001) 362-379
-
(2001)
Metab. Eng.
, vol.3
, Issue.4
, pp. 362-379
-
-
Kremling, A.1
Bettenbrock, K.2
Laube, B.3
Jahreis, K.4
Lengeler, J.5
Gilles, E.6
-
68
-
-
0346022968
-
Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism
-
Kremling A., Fischer S., Sauter T., Bettenbrock K., and Gilles E. Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism. BioSystems 73 1 (2004) 57-71
-
(2004)
BioSystems
, vol.73
, Issue.1
, pp. 57-71
-
-
Kremling, A.1
Fischer, S.2
Sauter, T.3
Bettenbrock, K.4
Gilles, E.5
-
69
-
-
0034805944
-
The organization of metabolic reaction networks: II. Signal processing in hierarchical structured functional units
-
Kremling A., and Gilles E. The organization of metabolic reaction networks: II. Signal processing in hierarchical structured functional units. Metab. Eng. 3 2 (2001) 138-150
-
(2001)
Metab. Eng.
, vol.3
, Issue.2
, pp. 138-150
-
-
Kremling, A.1
Gilles, E.2
-
70
-
-
0036266647
-
The regulation of enzyme IIA(Glc) expression controls adenylate cyclase activity in Escherichia coli
-
Krin E., Sismeiro O., Danchin A., and Bertin P. The regulation of enzyme IIA(Glc) expression controls adenylate cyclase activity in Escherichia coli. Microbiology 148 5 (2002) 1553-1559
-
(2002)
Microbiology
, vol.148
, Issue.5
, pp. 1553-1559
-
-
Krin, E.1
Sismeiro, O.2
Danchin, A.3
Bertin, P.4
-
71
-
-
0017285768
-
Properties of adenyl cyclase and cyclic adenosine 3′,5′-monophosphate receptor protein-deficient mutants of Escherichia coli
-
Kumar S. Properties of adenyl cyclase and cyclic adenosine 3′,5′-monophosphate receptor protein-deficient mutants of Escherichia coli. J. Bacteriol. 125 2 (1976) 545-555
-
(1976)
J. Bacteriol.
, vol.125
, Issue.2
, pp. 545-555
-
-
Kumar, S.1
-
72
-
-
1342345189
-
Catabolite activator protein: DNA binding and transcription activation
-
Lawson C., Swigon D., Murakami K., Darst S., Berman H., and Ebright R. Catabolite activator protein: DNA binding and transcription activation. Curr. Opin. Struct. Biol. 14 1 (2004) 10-20
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, Issue.1
, pp. 10-20
-
-
Lawson, C.1
Swigon, D.2
Murakami, K.3
Darst, S.4
Berman, H.5
Ebright, R.6
-
73
-
-
0037440734
-
Evolution of transcription factors and the gene regulatory network in Escherichia coli
-
Madan Babu M., and Teichmann S. Evolution of transcription factors and the gene regulatory network in Escherichia coli. Nucleic Acids Res. 31 4 (2003) 1234-1244
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.4
, pp. 1234-1244
-
-
Madan Babu, M.1
Teichmann, S.2
-
74
-
-
0345730808
-
Growth-phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coli
-
Mallik P., Pratt T., Beach M., Bradley M., Undamatla J., and Osuna R. Growth-phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coli. J. Bacteriol. 186 1 (2004) 122-135
-
(2004)
J. Bacteriol.
, vol.186
, Issue.1
, pp. 122-135
-
-
Mallik, P.1
Pratt, T.2
Beach, M.3
Bradley, M.4
Undamatla, J.5
Osuna, R.6
-
75
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
Martinez-Antonio A., and Collado-Vides J. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr. Opin. Microbiol. 6 5 (2003) 482-489
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, Issue.5
, pp. 482-489
-
-
Martinez-Antonio, A.1
Collado-Vides, J.2
-
77
-
-
0020554566
-
Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling
-
Menzel R., and Gellert M. Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling. Cell 34 1 (1983) 105-113
-
(1983)
Cell
, vol.34
, Issue.1
, pp. 105-113
-
-
Menzel, R.1
Gellert, M.2
-
78
-
-
0023136608
-
Fusions of the Escherichia coli gyrA and gyrB control regions to the galactokinase gene are inducible by coumermycin treatment
-
Menzel R., and Gellert M. Fusions of the Escherichia coli gyrA and gyrB control regions to the galactokinase gene are inducible by coumermycin treatment. J. Bacteriol. 169 3 (1987) 1272-1278
-
(1987)
J. Bacteriol.
, vol.169
, Issue.3
, pp. 1272-1278
-
-
Menzel, R.1
Gellert, M.2
-
79
-
-
0023176329
-
Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters
-
Menzel R., and Gellert M. Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters. Proc. Natl. Acad. Sci. U.S.A. 84 12 (1987) 4185-4189
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, Issue.12
, pp. 4185-4189
-
-
Menzel, R.1
Gellert, M.2
-
80
-
-
0028844979
-
A mathematical framework for describing and analysing gene regulatory networks
-
Mestl T., Plahte E., and Omholt S. A mathematical framework for describing and analysing gene regulatory networks. J. Theor. Biol. 176 2 (1995) 291-300
-
(1995)
J. Theor. Biol.
, vol.176
, Issue.2
, pp. 291-300
-
-
Mestl, T.1
Plahte, E.2
Omholt, S.3
-
81
-
-
0022349488
-
Evidence for negative control of cya transcription by cAMP and cAMP receptor protein in intact Escherichia coli cells
-
Mori K., and Aiba H. Evidence for negative control of cya transcription by cAMP and cAMP receptor protein in intact Escherichia coli cells. J. Biol. Chem. 260 27 (1985) 14838-14843
-
(1985)
J. Biol. Chem.
, vol.260
, Issue.27
, pp. 14838-14843
-
-
Mori, K.1
Aiba, H.2
-
82
-
-
0037215597
-
Regulation of the Escherichia coli rrnB P2 promoter
-
Murray H., Appleman J., and Gourse R. Regulation of the Escherichia coli rrnB P2 promoter. J. Bacteriol. 185 1 (2003) 28-34
-
(2003)
J. Bacteriol.
, vol.185
, Issue.1
, pp. 28-34
-
-
Murray, H.1
Appleman, J.2
Gourse, R.3
-
83
-
-
2942538872
-
Unique roles of the rrn P2 rRNA promoters in Escherichia coli
-
Murray H., and Gourse R. Unique roles of the rrn P2 rRNA promoters in Escherichia coli. Mol. Microbiol. 52 5 (2004) 1375-1387
-
(2004)
Mol. Microbiol.
, vol.52
, Issue.5
, pp. 1375-1387
-
-
Murray, H.1
Gourse, R.2
-
84
-
-
0037084067
-
Transcriptional regulation of fis operon involves a module of multiple coupled promoters
-
Nasser W., Rochman M., and Muskhelishvili G. Transcriptional regulation of fis operon involves a module of multiple coupled promoters. EMBO J. 21 4 (2002) 715-724
-
(2002)
EMBO J.
, vol.21
, Issue.4
, pp. 715-724
-
-
Nasser, W.1
Rochman, M.2
Muskhelishvili, G.3
-
85
-
-
0026508913
-
Fis-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions
-
Nilsson L., Verbeek H., Vijgenboom E., van Drunen C., and Vanet A.B.L. Fis-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions. J. Bacteriol. 174 3 (1992) 921-929
-
(1992)
J. Bacteriol.
, vol.174
, Issue.3
, pp. 921-929
-
-
Nilsson, L.1
Verbeek, H.2
Vijgenboom, E.3
van Drunen, C.4
Vanet, A.B.L.5
-
86
-
-
0026569267
-
The E. coli fis promoter is subject to stringent control and autoregulation
-
Ninnemann O., Koch C., and Kahmann R. The E. coli fis promoter is subject to stringent control and autoregulation. EMBO J. 11 3 (1992) 1075-1083
-
(1992)
EMBO J.
, vol.11
, Issue.3
, pp. 1075-1083
-
-
Ninnemann, O.1
Koch, C.2
Kahmann, R.3
-
87
-
-
0022452957
-
Mechanism for the autogenous control of the crp operon: transcriptional inhibition by a divergent RNA transcript
-
Okamoto K., and Freundlich M. Mechanism for the autogenous control of the crp operon: transcriptional inhibition by a divergent RNA transcript. Proc. Natl. Acad. Sci. U.S.A. 83 14 (1986) 5000-5004
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, Issue.14
, pp. 5000-5004
-
-
Okamoto, K.1
Freundlich, M.2
-
88
-
-
0024110098
-
Evidence in vivo for autogenous control of the cyclic AMP receptor protein gene (crp) in Escherichia coli by divergent RNA
-
Okamoto K., Hara S., Bhasin R., and Freundlich M. Evidence in vivo for autogenous control of the cyclic AMP receptor protein gene (crp) in Escherichia coli by divergent RNA. J. Bacteriol. 170 11 (1988) 5076-5079
-
(1988)
J. Bacteriol.
, vol.170
, Issue.11
, pp. 5076-5079
-
-
Okamoto, K.1
Hara, S.2
Bhasin, R.3
Freundlich, M.4
-
89
-
-
10044234372
-
rRNA transcription in Escherichia coli
-
Paul B., Ross W., Gaal T., and Gourse R. rRNA transcription in Escherichia coli. Annu. Rev. Genet. 38 1 (2004) 749-770
-
(2004)
Annu. Rev. Genet.
, vol.38
, Issue.1
, pp. 749-770
-
-
Paul, B.1
Ross, W.2
Gaal, T.3
Gourse, R.4
-
90
-
-
11344266685
-
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
-
Peter B., Arsuaga J., Breier A., Khodursky A., Brown P., and Cozzarelli N. Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli. Genome Biol. 5 11 (2004) R87
-
(2004)
Genome Biol.
, vol.5
, Issue.11
-
-
Peter, B.1
Arsuaga, J.2
Breier, A.3
Khodursky, A.4
Brown, P.5
Cozzarelli, N.6
-
91
-
-
0001436751
-
The nuleoid
-
Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D.C.
-
Pettijohn D. The nuleoid. In: Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and S almonella: Cellular and Molecular Biology (1996), ASM Press, Washington D.C. 158-165
-
(1996)
Escherichia coli and S almonella: Cellular and Molecular Biology
, pp. 158-165
-
-
Pettijohn, D.1
-
92
-
-
0032020122
-
A methodological basis for description and analysis of systems with complex switch-like interactions
-
Plahte E., Mestl T., and Omholt S. A methodological basis for description and analysis of systems with complex switch-like interactions. J. Math. Biol. 36 (1998) 321-348
-
(1998)
J. Math. Biol.
, vol.36
, pp. 321-348
-
-
Plahte, E.1
Mestl, T.2
Omholt, S.3
-
93
-
-
0001014412
-
Phosphoenolpyruvate:carbohydrate phosphotransferase systems
-
Neidhardt F., Curtiss J., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D.C.
-
Postma P., Lengeler J., and Jacobson G. Phosphoenolpyruvate:carbohydrate phosphotransferase systems. In: Neidhardt F., Curtiss J., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington D.C. 1149-1174
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1149-1174
-
-
Postma, P.1
Lengeler, J.2
Jacobson, G.3
-
94
-
-
0030795165
-
Deletion analysis of the fis promoter region in Escherichia coli: antagonistic effects of integration host factor and Fis
-
Pratt T., Steiner T., Feldman L., Walker K., and Osuna R. Deletion analysis of the fis promoter region in Escherichia coli: antagonistic effects of integration host factor and Fis. J. Bacteriol. 179 20 (1997) 6367-6377
-
(1997)
J. Bacteriol.
, vol.179
, Issue.20
, pp. 6367-6377
-
-
Pratt, T.1
Steiner, T.2
Feldman, L.3
Walker, K.4
Osuna, R.5
-
96
-
-
0031552372
-
Regulation of Escherichia coli topA gene transcription: involvement of a sigmaS-dependent promoter
-
Qi H., Menzel R., and Tse-Dinh Y. Regulation of Escherichia coli topA gene transcription: involvement of a sigmaS-dependent promoter. J. Mol. Biol. 267 3 (1997) 481-489
-
(1997)
J. Mol. Biol.
, vol.267
, Issue.3
, pp. 481-489
-
-
Qi, H.1
Menzel, R.2
Tse-Dinh, Y.3
-
98
-
-
0034634571
-
Understanding glucose transport by the bacterial phosphoenolpyruvate:glycose phosphotransferase system on the basis of kinetic measurements in vitro
-
Rohwer J., Meadow N., Roseman S., Westerhoff H., and Postma P. Understanding glucose transport by the bacterial phosphoenolpyruvate:glycose phosphotransferase system on the basis of kinetic measurements in vitro. J. Biol. Chem. 275 45 (2000) 34909-34921
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.45
, pp. 34909-34921
-
-
Rohwer, J.1
Meadow, N.2
Roseman, S.3
Westerhoff, H.4
Postma, P.5
-
99
-
-
0036428761
-
Negative autoregulation speeds the response times of transcription networks
-
Rosenfeld N., Elowitz M., and Alon U. Negative autoregulation speeds the response times of transcription networks. J. Mol. Biol. 323 5 (2002) 785-793
-
(2002)
J. Mol. Biol.
, vol.323
, Issue.5
, pp. 785-793
-
-
Rosenfeld, N.1
Elowitz, M.2
Alon, U.3
-
100
-
-
0020362037
-
The cya locus of Escherichia coli K12: organization and gene products
-
Roy A., and Danchin A. The cya locus of Escherichia coli K12: organization and gene products. Mol. Gen. Genet. 188 3 (1982) 465-471
-
(1982)
Mol. Gen. Genet.
, vol.188
, Issue.3
, pp. 465-471
-
-
Roy, A.1
Danchin, A.2
-
101
-
-
0020995669
-
Regulation of adenylate cyclase synthesis in Escherichia coli: nucleotide sequence of the control region
-
Roy A., Haziza C., and Danchin A. Regulation of adenylate cyclase synthesis in Escherichia coli: nucleotide sequence of the control region. EMBO J. 2 5 (1983) 791-797
-
(1983)
EMBO J.
, vol.2
, Issue.5
, pp. 791-797
-
-
Roy, A.1
Haziza, C.2
Danchin, A.3
-
102
-
-
0000973692
-
Regulation of carbon utilization
-
Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds), ASM Press, Washington D.C.
-
Saier M.J., and Ramseier T.J.R. Regulation of carbon utilization. In: Neidhardt F., Curtiss R., Ingraham J., Lin E., Low K., Magasanik B., Reznikoff W., Riley M., Schaechter M., and Umbarger III H. (Eds). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington D.C. 1325-1343
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1325-1343
-
-
Saier, M.J.1
Ramseier, T.J.R.2
-
103
-
-
9144270496
-
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
-
Salgado H., Gama-Castro S., Martinez-Antonio A., Diaz-Peredo E., Sanchez-Solano F., Peralta-Gil M., Garcia-Alonso D., Jimenez-Jacinto V., Santos-Zavaleta A., Bonavides-Martinez C., and Collado-Vides J. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res. 1 32 (2004) D303-D306
-
(2004)
Nucleic Acids Res.
, vol.1
, Issue.32
-
-
Salgado, H.1
Gama-Castro, S.2
Martinez-Antonio, A.3
Diaz-Peredo, E.4
Sanchez-Solano, F.5
Peralta-Gil, M.6
Garcia-Alonso, D.7
Jimenez-Jacinto, V.8
Santos-Zavaleta, A.9
Bonavides-Martinez, C.10
Collado-Vides, J.11
-
104
-
-
0038690473
-
Control of rRNA expression in Escherichia coli
-
Schneider D., Ross W., and Gourse R. Control of rRNA expression in Escherichia coli. Curr. Opin. Microbiol. 6 2 (2003) 151-156
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, Issue.2
, pp. 151-156
-
-
Schneider, D.1
Ross, W.2
Gourse, R.3
-
105
-
-
0033404486
-
A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli
-
Schneider R., Travers A., Kutateladze T., and Muskhelishvili G. A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol. Microbiol. 34 5 (1999) 953-964
-
(1999)
Mol. Microbiol.
, vol.34
, Issue.5
, pp. 953-964
-
-
Schneider, R.1
Travers, A.2
Kutateladze, T.3
Muskhelishvili, G.4
-
106
-
-
0033814887
-
The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA
-
Schneider R., Travers A., and Muskhelishvili G. The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA. Mol. Microbiol. 38 1 (2000) 165-175
-
(2000)
Mol. Microbiol.
, vol.38
, Issue.1
, pp. 165-175
-
-
Schneider, R.1
Travers, A.2
Muskhelishvili, G.3
-
107
-
-
0033664358
-
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
-
Selinger D., Cheung K., Mei R., Johansson E., Richmond C., Blattner F., Lockhart D., and Church G. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nat. Biotechnol. 18 12 (2000) 1262-1268
-
(2000)
Nat. Biotechnol.
, vol.18
, Issue.12
, pp. 1262-1268
-
-
Selinger, D.1
Cheung, K.2
Mei, R.3
Johansson, E.4
Richmond, C.5
Blattner, F.6
Lockhart, D.7
Church, G.8
-
108
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr S., Milo R., Mangan S., and Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 31 1 (2002) 64-68
-
(2002)
Nat. Genet.
, vol.31
, Issue.1
, pp. 64-68
-
-
Shen-Orr, S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
109
-
-
0036227648
-
DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene-expression and metabolic regulation of both topoisomerase I and DNA gyrase
-
Snoep J., van der Weijden C., Andersen H., Westerhoff H., and Jensen P. DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene-expression and metabolic regulation of both topoisomerase I and DNA gyrase. Eur. J. Biochem. 269 6 (2002) 1662-1669
-
(2002)
Eur. J. Biochem.
, vol.269
, Issue.6
, pp. 1662-1669
-
-
Snoep, J.1
van der Weijden, C.2
Andersen, H.3
Westerhoff, H.4
Jensen, P.5
-
110
-
-
0024916497
-
Qualitative dynamics of piecewise-linear differential equations: a discrete mapping approach
-
Snoussi E. Qualitative dynamics of piecewise-linear differential equations: a discrete mapping approach. Dyn. Stabil. Syst. 4 3-4 (1989) 189-207
-
(1989)
Dyn. Stabil. Syst.
, vol.4
, Issue.3-4
, pp. 189-207
-
-
Snoussi, E.1
-
111
-
-
0033659769
-
Control of sporulation initiation in B acillus subtilis
-
Sonenshein A. Control of sporulation initiation in B acillus subtilis. Curr. Opin. Microbiol. 3 6 (2000) 561-566
-
(2000)
Curr. Opin. Microbiol.
, vol.3
, Issue.6
, pp. 561-566
-
-
Sonenshein, A.1
-
112
-
-
0031686015
-
CRP down-regulates adenylate cyclase activity by reducing the level of phosphorylated IIA(Glc), the glucose-specific phosphotransferase protein, in Escherichia coli
-
Takahashi H., Inada T., Postma P., and Aiba H. CRP down-regulates adenylate cyclase activity by reducing the level of phosphorylated IIA(Glc), the glucose-specific phosphotransferase protein, in Escherichia coli. Mol. Gen. Genet. 259 3 (1998) 317-326
-
(1998)
Mol. Gen. Genet.
, vol.259
, Issue.3
, pp. 317-326
-
-
Takahashi, H.1
Inada, T.2
Postma, P.3
Aiba, H.4
-
113
-
-
0037109068
-
Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis
-
Tani T., Khodursky A., Blumenthal R., Brown P., and Matthews R. Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis. Proc. Natl. Acad. Sci. U.S.A. 99 21 (2002) 13471-13476
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, Issue.21
, pp. 13471-13476
-
-
Tani, T.1
Khodursky, A.2
Blumenthal, R.3
Brown, P.4
Matthews, R.5
-
114
-
-
0041914463
-
Metabolic switching in the sugar phosphotransferase system of Escherichia coli
-
Thattai M., and Shraiman B. Metabolic switching in the sugar phosphotransferase system of Escherichia coli. Biophys. J. 85 2 (2003) 744-754
-
(2003)
Biophys. J.
, vol.85
, Issue.2
, pp. 744-754
-
-
Thattai, M.1
Shraiman, B.2
-
116
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks. I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
Thomas R., Thieffry D., and Kaufman M. Dynamical behaviour of biological regulatory networks. I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull. Math. Biol. 57 2 (1995) 247-276
-
(1995)
Bull. Math. Biol.
, vol.57
, Issue.2
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
-
117
-
-
0035082155
-
DNA supercoiling and transcription in Escherichia coli: the Fis connection
-
Travers A., Schneider R., and Muskhelishvili G. DNA supercoiling and transcription in Escherichia coli: the Fis connection. Biochimie 83 2 (2001) 213-217
-
(2001)
Biochimie
, vol.83
, Issue.2
, pp. 213-217
-
-
Travers, A.1
Schneider, R.2
Muskhelishvili, G.3
-
118
-
-
0023737117
-
Multiple promoters for transcription of the Escherichia coli DNA topoisomerase I gene and their regulation by DNA supercoiling
-
Tse-Dinh Y., and Beran R. Multiple promoters for transcription of the Escherichia coli DNA topoisomerase I gene and their regulation by DNA supercoiling. J. Mol. Biol. 202 4 (1988) 735-742
-
(1988)
J. Mol. Biol.
, vol.202
, Issue.4
, pp. 735-742
-
-
Tse-Dinh, Y.1
Beran, R.2
-
119
-
-
0037376655
-
Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
-
Tyson J., Chen K., and Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell. Biol. 15 2 (2003) 221-231
-
(2003)
Curr. Opin. Cell. Biol.
, vol.15
, Issue.2
, pp. 221-231
-
-
Tyson, J.1
Chen, K.2
Novak, B.3
-
120
-
-
2942750479
-
Modeling the quorum sensing regulatory network of human-pathogenic Pseudomonas aeruginosa
-
Usseglio Viretta U., and Fussenegger M. Modeling the quorum sensing regulatory network of human-pathogenic Pseudomonas aeruginosa. Biotechnol. Prog. 20 3 (2004) 670-678
-
(2004)
Biotechnol. Prog.
, vol.20
, Issue.3
, pp. 670-678
-
-
Usseglio Viretta, U.1
Fussenegger, M.2
-
121
-
-
0033063805
-
Functional determinants of the Escherichia coli fis promoter: roles of - 35, - 10, and transcription initiation regions in the response to stringent control and growth-phase-dependent regulation
-
Walker K., Atkins C., and Osuna R. Functional determinants of the Escherichia coli fis promoter: roles of - 35, - 10, and transcription initiation regions in the response to stringent control and growth-phase-dependent regulation. J. Bacteriol. 181 4 (1999) 1269-1280
-
(1999)
J. Bacteriol.
, vol.181
, Issue.4
, pp. 1269-1280
-
-
Walker, K.1
Atkins, C.2
Osuna, R.3
-
122
-
-
0035909791
-
Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification
-
Wang J., Gilles E., Lengeler J., and Jahreis K. Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification. J. Biotechnol. 92 2 (2001) 133-158
-
(2001)
J. Biotechnol.
, vol.92
, Issue.2
, pp. 133-158
-
-
Wang, J.1
Gilles, E.2
Lengeler, J.3
Jahreis, K.4
-
123
-
-
0034065133
-
Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis
-
Weinstein-Fischer D., Elgrably-Weiss M., and Altuvia S. Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis. Mol. Microbiol. 35 6 (2000) 1413-1420
-
(2000)
Mol. Microbiol.
, vol.35
, Issue.6
, pp. 1413-1420
-
-
Weinstein-Fischer, D.1
Elgrably-Weiss, M.2
Altuvia, S.3
-
124
-
-
3142678124
-
Molecular components of physiological stress responses in Escherichia coli
-
Wick L., and Egli T. Molecular components of physiological stress responses in Escherichia coli. Adv. Biochem. Eng. Biotechnol. 89 (2004) 1-45
-
(2004)
Adv. Biochem. Eng. Biotechnol.
, vol.89
, pp. 1-45
-
-
Wick, L.1
Egli, T.2
-
125
-
-
0014974440
-
On the relation between effector concentration and the rate of induced enzyme synthesis
-
Yagil G., and Yagil E. On the relation between effector concentration and the rate of induced enzyme synthesis. Biophys. J. 11 1 (1971) 11-27
-
(1971)
Biophys. J.
, vol.11
, Issue.1
, pp. 11-27
-
-
Yagil, G.1
Yagil, E.2
-
126
-
-
0020619694
-
Purification and characterization of adenylate cyclase from Escherichia coli K12
-
Yang J., and Epstein W. Purification and characterization of adenylate cyclase from Escherichia coli K12. J. Biol. Chem. 258 6 (1983) 3750-3758
-
(1983)
J. Biol. Chem.
, vol.258
, Issue.6
, pp. 3750-3758
-
-
Yang, J.1
Epstein, W.2
-
127
-
-
0034126370
-
Monte Carlo implementation of supercoiled double-stranded DNA
-
Yang Z., Haijun Z., and Zhong-Can O. Monte Carlo implementation of supercoiled double-stranded DNA. Biophys. J. 78 4 (2000) 1979-1987
-
(2000)
Biophys. J.
, vol.78
, Issue.4
, pp. 1979-1987
-
-
Yang, Z.1
Haijun, Z.2
Zhong-Can, O.3
-
128
-
-
0029944245
-
Effects of Fis on ribosome synthesis and activity and on rRNA promoter activities in Escherichia coli
-
Zhang X., and Bremer H. Effects of Fis on ribosome synthesis and activity and on rRNA promoter activities in Escherichia coli. J. Mol. Biol. 259 1 (1996) 27-40
-
(1996)
J. Mol. Biol.
, vol.259
, Issue.1
, pp. 27-40
-
-
Zhang, X.1
Bremer, H.2
-
129
-
-
0036818941
-
Kinetic properties of rrn promoters in Escherichia coli
-
Zhang X., Dennis P., Ehrenberg M., and Bremer H. Kinetic properties of rrn promoters in Escherichia coli. Biochimie 54 10 (2002) 981-996
-
(2002)
Biochimie
, vol.54
, Issue.10
, pp. 981-996
-
-
Zhang, X.1
Dennis, P.2
Ehrenberg, M.3
Bremer, H.4
-
130
-
-
0344012447
-
Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation
-
Zhi H., Wang X., Cabrera J., Johnson R., and Jin D. Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation. J. Biol. Chem. 278 47 (2003) 47340-47349
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.47
, pp. 47340-47349
-
-
Zhi, H.1
Wang, X.2
Cabrera, J.3
Johnson, R.4
Jin, D.5
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