-
2
-
-
33644845526
-
Binding site flexibility: Molecular simulation of partial and full agonists with a glutamate receptor
-
Arinaminpathy Y, Sansom MS, Biggin PC (2006) Binding site flexibility: molecular simulation of partial and full agonists with a glutamate receptor. Mol Pharmacol 69:5-12.
-
(2006)
Mol Pharmacol
, vol.69
, pp. 5-12
-
-
Arinaminpathy, Y.1
Sansom, M.S.2
Biggin, P.C.3
-
3
-
-
0033636314
-
Mechanisms for activation and antagonism of an AMPA-sensitive glutamate receptor: Crystal structures of the GluR2 ligand binding core
-
Armstrong N, Gouaux E (2000) Mechanisms for activation and antagonism of an AMPA-sensitive glutamate receptor: crystal structures of the GluR2 ligand binding core. Neuron 28:165-181.
-
(2000)
Neuron
, vol.28
, pp. 165-181
-
-
Armstrong, N.1
Gouaux, E.2
-
4
-
-
0038625032
-
Tuning activation of the AMPA-sensitive GluR2 ion channel by genetic adjustment of agonist-induced conformational changes
-
USA
-
Armstrong N, Mayer M, Gouaux E (2003) Tuning activation of the AMPA-sensitive GluR2 ion channel by genetic adjustment of agonist-induced conformational changes. Proc Natl Acad Sci USA 100:5736-5741.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 5736-5741
-
-
Armstrong, N.1
Mayer, M.2
Gouaux, E.3
-
5
-
-
0037832971
-
Ligands for glutamate receptors: Design and therapeutic prospects
-
Brauner-Osborne H, Egebjerg J, Nielsen EO, Madsen U, Krogsgaard-Larsen P (2000) Ligands for glutamate receptors: design and therapeutic prospects. J Med Chem 43:2609-2645.
-
(2000)
J Med Chem
, vol.43
, pp. 2609-2645
-
-
Brauner-Osborne, H.1
Egebjerg, J.2
Nielsen, E.O.3
Madsen, U.4
Krogsgaard-Larsen, P.5
-
6
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL (1998) Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54:905-921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
7
-
-
0033576612
-
Functional characterization of a potassium-selective prokaryotic glutamate receptor
-
Chen GQ, Cui C, Mayer ML, Gouaux E (1999) Functional characterization of a potassium-selective prokaryotic glutamate receptor. Nature 402:817-821.
-
(1999)
Nature
, vol.402
, pp. 817-821
-
-
Chen, G.Q.1
Cui, C.2
Mayer, M.L.3
Gouaux, E.4
-
10
-
-
28244465987
-
Synthesis and pharmacology of willardiine derivatives acting as antagonists of kainate receptors
-
Dolman NP, Troop HM, More JC, Alt A, Knauss JL, Nistico R, Jack S, Morley RM, Bortolotto ZA, Roberts PJ, Bleakman D, Collingridge GL, Jane DE (2005) Synthesis and pharmacology of willardiine derivatives acting as antagonists of kainate receptors. J Med Chem 48:7867-7881.
-
(2005)
J Med Chem
, vol.48
, pp. 7867-7881
-
-
Dolman, N.P.1
Troop, H.M.2
More, J.C.3
Alt, A.4
Knauss, J.L.5
Nistico, R.6
Jack, S.7
Morley, R.M.8
Bortolotto, Z.A.9
Roberts, P.J.10
Bleakman, D.11
Collingridge, G.L.12
Jane, D.E.13
-
11
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf RM (1997) An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J Mol Graph Model 15:132-134:112-133.
-
(1997)
J Mol Graph Model
, vol.15
, pp. 132-134
-
-
Esnouf, R.M.1
-
12
-
-
0038606161
-
Structural model of the N-methyl-D-aspartate receptor glycine site probed by site-directed chemical coupling
-
Foucaud B, Laube B, Schemm R, Kreimeyer A, Goeldner M, Betz H (2003) Structural model of the N-methyl-D-aspartate receptor glycine site probed by site-directed chemical coupling. J Biol Chem 278:24011-24017.
-
(2003)
J Biol Chem
, vol.278
, pp. 24011-24017
-
-
Foucaud, B.1
Laube, B.2
Schemm, R.3
Kreimeyer, A.4
Goeldner, M.5
Betz, H.6
-
13
-
-
1242311587
-
Mechanisms of activation, inhibition and specificity: Crystal structures of NR1 ligand-binding core
-
Furukawa H, Gouaux E (2003) Mechanisms of activation, inhibition and specificity: crystal structures of NR1 ligand-binding core. EMBO J 22:1-13.
-
(2003)
EMBO J
, vol.22
, pp. 1-13
-
-
Furukawa, H.1
Gouaux, E.2
-
14
-
-
27744500994
-
Subunit arrangement and function in NMDA receptors
-
Furukawa H, Singh SK, Mancusso R, Gouaux E (2005) Subunit arrangement and function in NMDA receptors. Nature 438:185-192.
-
(2005)
Nature
, vol.438
, pp. 185-192
-
-
Furukawa, H.1
Singh, S.K.2
Mancusso, R.3
Gouaux, E.4
-
15
-
-
0037448433
-
Competitive antagonism of AMPA receptors by ligands of different classes: Crystal structure of ATPO bound to the GluR2 ligand-binding core, in comparison with DNQX
-
Hogner A, Greenwood JR, Liljefors T, Lunn ML, Egebjerg J, Larsen IK, Gouaux E, Kastrup JS (2003) Competitive antagonism of AMPA receptors by ligands of different classes: crystal structure of ATPO bound to the GluR2 ligand-binding core, in comparison with DNQX. J Med Chem 46:214-221.
-
(2003)
J Med Chem
, vol.46
, pp. 214-221
-
-
Hogner, A.1
Greenwood, J.R.2
Liljefors, T.3
Lunn, M.L.4
Egebjerg, J.5
Larsen, I.K.6
Gouaux, E.7
Kastrup, J.S.8
-
16
-
-
0001940513
-
Structure of ionotropic glutamate receptors
-
Jonas P, Monyer H, eds, Berlin: Springer
-
Hollmann M (1999) Structure of ionotropic glutamate receptors. In: Ionotropic glutamate receptors in the CNS (Jonas P, Monyer H, eds), pp 3-98. Berlin: Springer.
-
(1999)
Ionotropic Glutamate Receptors in the CNS
, pp. 3-98
-
-
Hollmann, M.1
-
17
-
-
0023767546
-
Quinoxalinediones: Potent competitive non-NMDA glutamate receptor antagonists
-
Honore T, Davies SN, Drejer J, Fletcher EJ, Jacobsen P, Lodge D, Nielsen FE (1988) Quinoxalinediones: potent competitive non-NMDA glutamate receptor antagonists. Science 241:701-703.
-
(1988)
Science
, vol.241
, pp. 701-703
-
-
Honore, T.1
Davies, S.N.2
Drejer, J.3
Fletcher, E.J.4
Jacobsen, P.5
Lodge, D.6
Nielsen, F.E.7
-
18
-
-
1242293631
-
Regulation of AMPA receptor gating by ligand binding core dimers
-
Horning MS, Mayer ML (2004) Regulation of AMPA receptor gating by ligand binding core dimers. Neuron 41:379-388.
-
(2004)
Neuron
, vol.41
, pp. 379-388
-
-
Horning, M.S.1
Mayer, M.L.2
-
19
-
-
20444408992
-
Mechanism of partial agonist action at the NR1 subunit of NMDA receptors
-
Inanobe A, Furukawa H, Gouaux E (2005) Mechanism of partial agonist action at the NR1 subunit of NMDA receptors. Neuron 47:71-84.
-
(2005)
Neuron
, vol.47
, pp. 71-84
-
-
Inanobe, A.1
Furukawa, H.2
Gouaux, E.3
-
20
-
-
0037207136
-
Mechanism of activation and selectivity in a ligand-gated ion channel: Structural and functional studies of GluR2 and quisqualate
-
Jin R, Horning M, Mayer ML, Gouaux E (2002) Mechanism of activation and selectivity in a ligand-gated ion channel: structural and functional studies of GluR2 and quisqualate. Biochemistry 41:15635-15643.
-
(2002)
Biochemistry
, vol.41
, pp. 15635-15643
-
-
Jin, R.1
Horning, M.2
Mayer, M.L.3
Gouaux, E.4
-
21
-
-
0043033172
-
Structural basis for partial agonist action at ionotropic glutamate receptors
-
Jin R, Banke TG, Mayer ML, Traynelis SF, Gouaux E (2003) Structural basis for partial agonist action at ionotropic glutamate receptors. Nat Neurosci 6:803-810.
-
(2003)
Nat Neurosci
, vol.6
, pp. 803-810
-
-
Jin, R.1
Banke, T.G.2
Mayer, M.L.3
Traynelis, S.F.4
Gouaux, E.5
-
22
-
-
25644454403
-
Mechanism of positive allosteric modulators acting on AMPA receptors
-
Jin R, Clark S, Weeks AM, Dudman JT, Gouaux E, Partin KM (2005) Mechanism of positive allosteric modulators acting on AMPA receptors. J Neurosci 25:9027-9036.
-
(2005)
J Neurosci
, vol.25
, pp. 9027-9036
-
-
Jin, R.1
Clark, S.2
Weeks, A.M.3
Dudman, J.T.4
Gouaux, E.5
Partin, K.M.6
-
23
-
-
0030841587
-
Electron-density map interpretation
-
Jones TA, Kjeldgaard M (1997) Electron-density map interpretation. Methods Enzymol 277:173-208.
-
(1997)
Methods Enzymol
, vol.277
, pp. 173-208
-
-
Jones, T.A.1
Kjeldgaard, M.2
-
24
-
-
0002906346
-
Around O
-
Rossman MG, Arnold E, eds, Dordrecht: Kluwer Academic Publishers
-
Kleywegt GJ, Zou JY, Kjeldgaard M, Jones TA (2001) Around O. In: International tables for crystallography, Vol F, Crystallography of biological macromolecules (Rossman MG, Arnold E, eds), pp 353-356. Dordrecht: Kluwer Academic Publishers.
-
(2001)
International Tables for Crystallography, Vol F, Crystallography of Biological Macromolecules
, pp. 353-356
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Kjeldgaard, M.3
Jones, T.A.4
-
25
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24:946-950.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
26
-
-
33645001653
-
Agonist activities of competitive AMPA receptor antagonists
-
Li Y, Nilsson L, Rogers GA (2005) Agonist activities of competitive AMPA receptor antagonists. Soc Neurosci Abstr 31:486.6.
-
(2005)
Soc Neurosci Abstr
, vol.31
-
-
Li, Y.1
Nilsson, L.2
Rogers, G.A.3
-
27
-
-
27744445169
-
Protein flexibility using constraints from molecular dynamics simulations
-
Mamonova T, Hespenheide B, Straub R, Thorpe MF, Kurnikova M (2005) Protein flexibility using constraints from molecular dynamics simulations. Phys Biol 2:S137-S147.
-
(2005)
Phys Biol
, vol.2
-
-
Mamonova, T.1
Hespenheide, B.2
Straub, R.3
Thorpe, M.F.4
Kurnikova, M.5
-
28
-
-
20444429431
-
Glutamate receptor ion channels
-
Mayer ML (2005a) Glutamate receptor ion channels. Curr Opin Neurobiol 15:282-288.
-
(2005)
Curr Opin Neurobiol
, vol.15
, pp. 282-288
-
-
Mayer, M.L.1
-
29
-
-
13844266202
-
Crystal structures of the GluR5 and GluR6 ligand binding cores: Molecular mechanisms underlying kainate receptor selectivity
-
Mayer ML (2005b) Crystal structures of the GluR5 and GluR6 ligand binding cores: molecular mechanisms underlying kainate receptor selectivity. Neuron 45:539-552.
-
(2005)
Neuron
, vol.45
, pp. 539-552
-
-
Mayer, M.L.1
-
30
-
-
2342462388
-
Structure and function of glutamate receptor ion channels
-
Mayer ML, Armstrong N (2004) Structure and function of glutamate receptor ion channels. Annu Rev Physiol 66:161-181.
-
(2004)
Annu Rev Physiol
, vol.66
, pp. 161-181
-
-
Mayer, M.L.1
Armstrong, N.2
-
31
-
-
0035943408
-
Mechanisms for ligand binding to GluR0 ion channels: Crystal structures of the glutamate and serine complexes and a closed apo state
-
Mayer ML, Olson R, Gouaux E (2001) Mechanisms for ligand binding to GluR0 ion channels: crystal structures of the glutamate and serine complexes and a closed apo state. J Mol Biol 311:815-836.
-
(2001)
J Mol Biol
, vol.311
, pp. 815-836
-
-
Mayer, M.L.1
Olson, R.2
Gouaux, E.3
-
33
-
-
0037143575
-
Structural mobility of the extracellular ligand-binding core of an ionotropic glutamate receptor. Analysis of NMR relaxation dynamics
-
McFeeters RL, Oswald RE (2002) Structural mobility of the extracellular ligand-binding core of an ionotropic glutamate receptor. Analysis of NMR relaxation dynamics. Biochemistry 41:10472-10481.
-
(2002)
Biochemistry
, vol.41
, pp. 10472-10481
-
-
McFeeters, R.L.1
Oswald, R.E.2
-
34
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt EA, Bacon DJ (1997) Raster3D: photorealistic molecular graphics. Methods Enzymol 277:505-524.
-
(1997)
Methods Enzymol
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
35
-
-
2542422824
-
Characterisation of UBP296: A novel, potent and selective kainate receptor antagonist
-
More JC, Nistico R, Dolman NP, Clarke VR, Alt AJ, Ogden AM, Buelens FP, Troop HM, Kelland EE, Pilato F, Bleakman D, Bortolotto ZA, Collingridge GL, Jane DE (2004) Characterisation of UBP296: a novel, potent and selective kainate receptor antagonist. Neuropharmacology 47:46-64.
-
(2004)
Neuropharmacology
, vol.47
, pp. 46-64
-
-
More, J.C.1
Nistico, R.2
Dolman, N.P.3
Clarke, V.R.4
Alt, A.J.5
Ogden, A.M.6
Buelens, F.P.7
Troop, H.M.8
Kelland, E.E.9
Pilato, F.10
Bleakman, D.11
Bortolotto, Z.A.12
Collingridge, G.L.13
Jane, D.E.14
-
36
-
-
1042267373
-
Model structures of the N-methyl-D-aspartate receptor subunit NR1 explain the molecular recognition of agonist and antagonist ligands
-
Moretti L, Pentikainen OT, Settimo L, Johnson MS (2004) Model structures of the N-methyl-D-aspartate receptor subunit NR1 explain the molecular recognition of agonist and antagonist ligands. J Struct Biol 145:205-215.
-
(2004)
J Struct Biol
, vol.145
, pp. 205-215
-
-
Moretti, L.1
Pentikainen, O.T.2
Settimo, L.3
Johnson, M.S.4
-
37
-
-
0033638816
-
Subunit composition of kainate receptors in hippocampal interneurons
-
Mulle C, Sailer A, Swanson GT, Brana C, O'Gorman S, Bettler B, Heinemann SF (2000) Subunit composition of kainate receptors in hippocampal interneurons. Neuron 28:475-484.
-
(2000)
Neuron
, vol.28
, pp. 475-484
-
-
Mulle, C.1
Sailer, A.2
Swanson, G.T.3
Brana, C.4
O'Gorman, S.5
Bettler, B.6
Heinemann, S.F.7
-
38
-
-
13444281913
-
Structure of the kainate receptor subunit GluR6 agonist-binding domain complexed with domoic acid
-
USA
-
Nanao MH, Green T, Stern-Bach Y, Heinemann SF, Choe S (2005) Structure of the kainate receptor subunit GluR6 agonist-binding domain complexed with domoic acid. Proc Natl Acad Sci USA 102:1708-1713.
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 1708-1713
-
-
Nanao, M.H.1
Green, T.2
Stern-Bach, Y.3
Heinemann, S.F.4
Choe, S.5
-
39
-
-
13844272397
-
Crystal structure of the kainate receptor GluR5 ligand-binding core in complex with (S)-glutamate
-
Naur P, Vestergaard B, Skov LK, Egebjerg J, Gajhede M, Kastrup JS (2005) Crystal structure of the kainate receptor GluR5 ligand-binding core in complex with (S)-glutamate. FEBS Lett 579:1154-1160.
-
(2005)
FEBS Lett
, vol.579
, pp. 1154-1160
-
-
Naur, P.1
Vestergaard, B.2
Skov, L.K.3
Egebjerg, J.4
Gajhede, M.5
Kastrup, J.S.6
-
40
-
-
0037905523
-
Denzo and Scalepack
-
Rossman MG, Arnold E, eds, Dordrecht: Kluwer Academic Publishers
-
Otwinowski Z, Minor W (2001) Denzo and Scalepack. In: International tables for crystallography, Vol F, Crystallography of biological macromolecules (Rossman MG, Arnold E, eds), pp. 226-235. Dordrecht: Kluwer Academic Publishers.
-
(2001)
International Tables for Crystallography, Vol F, Crystallography of Biological Macromolecules
, pp. 226-235
-
-
Otwinowski, Z.1
Minor, W.2
-
41
-
-
23844520061
-
A molecular viewer for the analysis of TLS rigid-body motion in macromolecules
-
Painter J, Merritt EA (2005) A molecular viewer for the analysis of TLS rigid-body motion in macromolecules. Acta Crystallogr D Biol Crystallogr 61:465-471.
-
(2005)
Acta Crystallogr D Biol Crystallogr
, vol.61
, pp. 465-471
-
-
Painter, J.1
Merritt, E.A.2
-
42
-
-
0344153957
-
Selective agonist binding of (S)-2-amino-3-(3-hydroxy-5-methyl-4- isoxazolyl)propionic acid (AMPA) and 2S-(2alpha,3beta,4beta)-2-carboxy-4-(1- methylethenyl)-3-pyrrolidineacetic acid (kainate) receptors: A molecular modeling study
-
Pentikainen OT, Settimo L, Keinanen K, Johnson MS (2003) Selective agonist binding of (S)-2-amino-3-(3-hydroxy-5-methyl-4-isoxazolyl)propionic acid (AMPA) and 2S-(2alpha,3beta,4beta)-2-carboxy-4-(1-methylethenyl)-3- pyrrolidineacetic acid (kainate) receptors: a molecular modeling study. Biochem Pharmacol 66:2413-2425.
-
(2003)
Biochem Pharmacol
, vol.66
, pp. 2413-2425
-
-
Pentikainen, O.T.1
Settimo, L.2
Keinanen, K.3
Johnson, M.S.4
-
43
-
-
0029981539
-
Atomic structure and specificity of bacterial periplasmic receptors for active transport and chemotaxis: Variation of common themes
-
Quiocho FA, Ledvina PS (1996) Atomic structure and specificity of bacterial periplasmic receptors for active transport and chemotaxis: variation of common themes. Mol Microbiol 20:17-25.
-
(1996)
Mol Microbiol
, vol.20
, pp. 17-25
-
-
Quiocho, F.A.1
Ledvina, P.S.2
-
44
-
-
0032486422
-
The tetrameric structure of a glutamate receptor channel
-
Rosenmund C, Stern-Bach Y, Stevens CF (1998) The tetrameric structure of a glutamate receptor channel. Science 280:1596-1599.
-
(1998)
Science
, vol.280
, pp. 1596-1599
-
-
Rosenmund, C.1
Stern-Bach, Y.2
Stevens, C.F.3
-
45
-
-
0037118049
-
Mechanism of glutamate receptor desensitization
-
Sun Y, Olson R, Horning M, Armstrong N, Mayer M, Gouaux E (2002) Mechanism of glutamate receptor desensitization. Nature 417:245-253.
-
(2002)
Nature
, vol.417
, pp. 245-253
-
-
Sun, Y.1
Olson, R.2
Horning, M.3
Armstrong, N.4
Mayer, M.5
Gouaux, E.6
-
47
-
-
14644394262
-
Microsecond-to-millisecond conformational dynamics demarcate the GluR2 glutamate receptor bound to agonists glutamate, quisqualate, and AMPA
-
Valentine ER, Palmer AGI (2005) Microsecond-to-millisecond conformational dynamics demarcate the GluR2 glutamate receptor bound to agonists glutamate, quisqualate, and AMPA. Biochemistry 44:3410-3417.
-
(2005)
Biochemistry
, vol.44
, pp. 3410-3417
-
-
Valentine, E.R.1
Palmer, A.G.I.2
-
48
-
-
0035182073
-
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
-
Winn MD, Isupov MN, Murshudov GN (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement. Acta Crystallogr D Biol Crystallogr 57:122-133.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 122-133
-
-
Winn, M.D.1
Isupov, M.N.2
Murshudov, G.N.3
|