-
1
-
-
0031708266
-
Electrostatics and the ion selectivity of ligand-gated channels
-
Adcock C, Smith GR, and Sansom MSP (1998) Electrostatics and the selectivity of ligand-gated ion channels. Biophys J 75:1211-1222. (Pubitemid 28397591)
-
(1998)
Biophysical Journal
, vol.75
, Issue.3
, pp. 1211-1222
-
-
Adcock, C.1
Smith, G.R.2
Sansom, M.S.P.3
-
2
-
-
0036154304
-
Molecular dynamics simulations of the ligand-binding domain of the ionotropic glutamate receptor GluR2
-
Arinaminpathy Y, Sansom MSP, and Biggin PC (2002) Molecular dynamics simulations of the ligand-binding domain of the ionotropic glutamate receptor GluR2. Biophys J 82:676-683. (Pubitemid 34111209)
-
(2002)
Biophysical Journal
, vol.82
, Issue.2
, pp. 676-683
-
-
Arinaminpathy, Y.1
Sansom, M.S.P.2
Biggin, P.C.3
-
3
-
-
0033636314
-
Mechanisms for activation and antagonism of an AMPA-sensitive glutamate receptor: Crystal structures of the GluR2 ligand binding core
-
Armstrong N and Gouaux E (2000) Mechanisms for activation and antagonism of an AMPA-sensitive glutamate receptor: crystal structures of the GluR2 ligand binding core. Neuron 28:165-181.
-
(2000)
Neuron
, vol.28
, pp. 165-181
-
-
Armstrong, N.1
Gouaux, E.2
-
5
-
-
0032578635
-
Structural of a glutamate-receptor ligand-binding core in complex with kainate
-
DOI 10.1038/27692
-
Armstrong N, Sun Y, Chen G-Q, and Gouaux E (1998) Structure of a glutamate-receptor ligand-binding core in complex with kainate. Nature (Lond) 395:913-917. (Pubitemid 28503434)
-
(1998)
Nature
, vol.395
, Issue.6705
, pp. 913-917
-
-
Armstrong, N.1
Sun, Y.2
Chen, G.-Q.3
Gouaux, E.4
-
6
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, and Haak JR (1984) Molecular dynamics with coupling to an external bath. J Chem Phys 81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
8
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, and Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
9
-
-
0031763592
-
AMPA receptors: Molecular and functional diversity
-
Borges K and Dingledine R (1998) AMPA receptors: molecular and functional diversity. Prog Brain Res 116:153-170. (Pubitemid 28526934)
-
(1998)
Progress in Brain Research
, vol.116
, pp. 153-170
-
-
Borges, K.1
Dingledine, R.2
-
10
-
-
0029102288
-
A P2X purinoceptor expressed by a subset of sensory neurons
-
Chen C-C, Akopian AN, Sivilotti L, Colquhoun D, Burnstock G, Wood JN (1995) A P2X purinoceptor expressed by a subset of sensory neurons. Nature (Lond) 377: 428-431.
-
(1995)
Nature (Lond)
, vol.377
, pp. 428-431
-
-
Chen, C.-C.1
Akopian, A.N.2
Sivilotti, L.3
Colquhoun, D.4
Burnstock, G.5
Wood, J.N.6
-
11
-
-
0032977199
-
Kainate receptors: Subunits, synaptic localization and function
-
DOI 10.1016/S0165-6147(98)01286-3, PII S0165614798012863
-
Chittajallu R, Braithwaite SP, Clarke VR, and Henley JM (1999) Kainate receptors: subunits, synaptic localization and function. Trends Pharmacol Sci 20:26-35. (Pubitemid 29304522)
-
(1999)
Trends in Pharmacological Sciences
, vol.20
, Issue.1
, pp. 26-35
-
-
Chittajallu, R.1
Braithwaite, S.P.2
Clarke, V.R.J.3
Henley, J.M.4
-
12
-
-
33846823909
-
Particle mesh Ewald-an N.log(N) method for Ewald sums in large systems
-
Darden T, York D, and Pedersen L (1993) Particle mesh Ewald-an N.log(N) method for Ewald sums in large systems. J Chem Phys 98:10089-10092.
-
(1993)
J Chem Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
13
-
-
0038719670
-
Is the isolated ligand binding domain a good model of the domain in the native receptor?
-
DOI 10.1074/jbc.C300105200
-
Deming D, Cheng Q, and Jayaraman V (2003) Is the isolated ligand binding domain a good model of the domain in the native receptor? J Biol Chem 278:17589-17592. (Pubitemid 36799358)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.20
, pp. 17589-17592
-
-
Deming, D.1
Cheng, Q.2
Jayaraman, V.3
-
14
-
-
0032912771
-
The glutamate receptor ion channels
-
Dingledine R, Borges K, Bowie D, and Traynelis SF (1999) The glutamate receptor ion channels. Pharmacol Rev 51:7-61. (Pubitemid 29113865)
-
(1999)
Pharmacological Reviews
, vol.51
, Issue.1
, pp. 7-61
-
-
Dingledine, R.1
Borges, K.2
Bowie, D.3
Traynelis, S.F.4
-
15
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essman U, Perera L, Berkowitz ML, Darden T, Lee H, and Pedersen LG (1995) A smooth particle mesh Ewald method. J Chem Phys 103:8577-8593.
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essman, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
16
-
-
20144365134
-
Tyr702 is an important determinant of agonist binding and domain closure of the ligand-binding core of GluR2
-
DOI 10.1124/mol.104.002931
-
Frandsen A, Pickering DS, Vestergaard B, Kasper C, Nielsen BB, Greenwood JR, Campiani G, Fattorusso C, Gajhede M, Schousboe A, et al. (2005) Tyr702 is an important determinant of agonist binding and domain closure of the ligandbinding core of GluR2. Mol Pharmacol 67:703-713. (Pubitemid 40372239)
-
(2005)
Molecular Pharmacology
, vol.67
, Issue.3
, pp. 703-713
-
-
Frandsen, A.1
Pickering, D.S.2
Vestergaard, B.3
Kasper, C.4
Nielsen, B.B.5
Greenwood, J.R.6
Campiani, G.7
Fattorusso, C.8
Gajhede, M.9
Schousboe, A.10
Kastrup, J.S.11
-
18
-
-
0000388705
-
LINCS: A Linear Constraint Solver for molecular simulations
-
Hess B, Bekker J, Berendsen HJC, and Fraaije JGEM (1997) LINCS: a linear constraint solver for molecular simulations. J Comput Chem 18:1463-1472. (Pubitemid 127637344)
-
(1997)
Journal of Computational Chemistry
, vol.18
, Issue.12
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
19
-
-
0036968894
-
Structural basis for AMPA receptor activation and ligand selectivity: Crystal structures of five agonist complexes with the GluR2 ligand-binding core
-
DOI 10.1016/S0022-2836(02)00650-2
-
Hogner A, Kastrup JS, Jin R, Liljefors T, Mayer ML, Egebjerg J, Larsen IK, and Gouaux E (2002) Structural basis for AMPA receptor activation and ligand selectivity: crystal structures of five agonist complexes with the glur2 ligand-binding core. J Mol Biol 322:93-109. (Pubitemid 36138726)
-
(2002)
Journal of Molecular Biology
, vol.322
, Issue.1
, pp. 93-109
-
-
Hogner, A.1
Kastrup, J.S.2
Jin, R.3
Liljefors, T.4
Mayer, M.L.5
Egebjerg, J.6
Larsen, I.K.7
Gouaux, E.8
-
21
-
-
0039592758
-
Ligand-protein interactions in the glutamate receptor
-
DOI 10.1021/bi000892f
-
Jayaraman V, Keesey R, and Madden DR (2000) Ligand-protein interactions in the glutamate receptor. Biochemistry 39:8693-8697. (Pubitemid 30602777)
-
(2000)
Biochemistry
, vol.39
, Issue.30
, pp. 8693-8697
-
-
Jayaraman, V.1
Keesey, R.2
Madden, D.R.3
-
22
-
-
0043033172
-
Structural basis for partial agonist action at ionotropic glutamate receptors
-
DOI 10.1038/nn1091
-
Jin R, Banke TG, Mayer ML, Traynelis SF, and Gouaux E (2003) Structural basis for partial agonist action at ionotropic glutamate receptors. Nat Neurosci 6:803-810. (Pubitemid 36929700)
-
(2003)
Nature Neuroscience
, vol.6
, Issue.8
, pp. 803-810
-
-
Jin, R.1
Banke, T.G.2
Mayer, M.L.3
Traynelis, S.F.4
Gouaux, E.5
-
23
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern-recognition of hydrogen-bonded and geometrical features
-
Kabsch W and Sander C (1983) Dictionary of protein secondary structure: pattern-recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
24
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24:946-950.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
26
-
-
0029583151
-
Molecular dissection of the agonist binding site of an AMPA receptor
-
Kuusinen A, Arvola M, and Keinanen K (1995) Molecular dissection of the agonist binding site of an AMPA receptor. EMBO (Eur Mol Biol Organ) J 14:6327-6332.
-
(1995)
EMBO (Eur Mol Biol Organ) J
, vol.14
, pp. 6327-6332
-
-
Kuusinen, A.1
Arvola, M.2
Keinanen, K.3
-
27
-
-
0031059975
-
Glutamate receptors of the kainate type and synaptic transmission
-
DOI 10.1016/S0166-2236(96)20055-4, PII S0166223696200554
-
Lerma J, Morales M, Vicente MA, and Herreras O (1997) Glutamate receptors of the kainate type and synpatic transmission. Trends Neurosci 20:9-12. (Pubitemid 26421224)
-
(1997)
Trends in Neurosciences
, vol.20
, Issue.1
, pp. 9-12
-
-
Lerma, J.1
Morales, M.2
Vicente, M.A.3
Herreras, O.4
-
28
-
-
1042278182
-
flip Channel Open?
-
DOI 10.1074/jbc.M310410200
-
Li G and Niu L (2004) How fast does the Glur1Qflip AMPA receptor channel open? J Biol Chem 279:3990-3997. (Pubitemid 38198981)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.6
, pp. 3990-3997
-
-
Li, G.1
Niu, L.2
-
29
-
-
0142031474
-
flip AMPA Receptor: A Laser-Pulse Photolysis Study
-
DOI 10.1021/bi0347961
-
Li G, Pei W, and Niu L (2003) Channel-opening kinetics of GluR2Qflip AMPA receptor: a laser-pulse photolysis study. Biochemistry 42:12358-12366. (Pubitemid 37296512)
-
(2003)
Biochemistry
, vol.42
, Issue.42
, pp. 12358-12366
-
-
Li, G.1
Pei, W.2
Niu, L.3
-
30
-
-
0037117739
-
Mechanism of glutamate receptor-channel function in rat hippocampal neurons investigated using the laser-pulse photolysis (LaPP) technique
-
DOI 10.1021/bi0118916
-
Li H, Nowak LM, Gee KR, and Hess GP (2002) Mechanism of glutamate receptor-channel function in rat hippocampal neurons investigated sing the laser-pulse photolysis (LaPP) technique. Biochemistry 41:4753-4759. (Pubitemid 34298641)
-
(2002)
Biochemistry
, vol.41
, Issue.15
, pp. 4753-4759
-
-
Li, H.1
Nowak, L.M.2
Gee, K.R.3
Hess, G.P.4
-
31
-
-
0035789518
-
GROMACS 3.0: A package for molecular simulation and trajectory analysis
-
DOI 10.1007/S008940100045
-
Lindahl E, Hess B, and van der Spoel D (2001) GROMACS 3.0: a package for molecular simulation and trajectory analysis. J Mol Model 7:306-317. (Pubitemid 36153547)
-
(2001)
Journal of Molecular Modeling
, vol.7
, Issue.8
, pp. 306-317
-
-
Lindahl, E.1
Hess, B.2
Van Der Spoel, D.3
-
32
-
-
0029899637
-
A venus flytrap mechanism for activation and desensitization of α- amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptors
-
DOI 10.1074/jbc.271.26.15299
-
Mano I, Lamed Y, and Teichberg VI (1996) A Venus flytrap mechanism for activation and desensitization of α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptors. J Biol Chem 271:15299-15302. (Pubitemid 26225293)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.26
, pp. 15299-15302
-
-
Mano, I.1
Lamed, Y.2
Teichberg, V.I.3
-
33
-
-
0032567729
-
A tetrameric subunit stoichiometry for a glutamate receptor-channel complex
-
Mano I and Teichberg VI (1998) A tetrameric subunit stoichiometry for a glutamate receptor channel complex. Neuroreport 9:327-331. (Pubitemid 28081410)
-
(1998)
NeuroReport
, vol.9
, Issue.2
, pp. 327-331
-
-
Mano, I.1
Teichberg, V.I.2
-
34
-
-
13844266202
-
Crystal structures of the GluR5 and GluR6 ligand binding cores: Molecular mechanisms underlying kainate receptor selectivity
-
Mayer ML (2005) Crystal structures of the GluR5 and GluR6 ligand binding cores: molecular mechanisms underlying kainate receptor selectivity. Neuron 45:539-552.
-
(2005)
Neuron
, vol.45
, pp. 539-552
-
-
Mayer, M.L.1
-
35
-
-
0037143575
-
Structural mobility of the extracellular ligand-binding core of an ionotropic glutamate receptor. Analysis of NMR relaxation dynamics
-
McFeeters RL and Oswald RE (2002) Structural mobility of the extracellular ligand-binding core of an ionotropic glutamate receptor. Analysis of NMR relaxation dynamics. Biochemistry 41:10472-10481.
-
(2002)
Biochemistry
, vol.41
, pp. 10472-10481
-
-
McFeeters, R.L.1
Oswald, R.E.2
-
36
-
-
0030815133
-
Raster3D: Photorealistic Molecular Graphics
-
DOI 10.1016/S0076-6879(97)77028-9
-
Merritt EA and Bacon J (1997) Raster3D: photorealistic molecular graphics. Methods Enzymol 277:505-524. (Pubitemid 27390937)
-
(1997)
Methods in Enzymology
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
37
-
-
13444281913
-
Structure of the kainate receptor subunit GluR6 agonist-binding domain complexed with domoic acid
-
DOI 10.1073/pnas.0409573102
-
Nanao MH, Green T, Stern-Bach Y, Heinemann SF, and Choe S (2005) Structure of the kainate receptor subunit GluR6 agonist-binding domain complexed with domoic acid. Proc Natl Acad Sci USA 102:1708-1713. (Pubitemid 40209232)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.5
, pp. 1708-1713
-
-
Nanao, M.H.1
Green, T.2
Stern-Bach, Y.3
Heinemann, S.F.4
Choe, S.5
-
38
-
-
13844272397
-
Crystal structure of the kainate receptor GluR5 ligand-binding core in complex with (S)-glutamate
-
DOI 10.1016/j.febslet.2005.01.012
-
Naur P, Vestergaard B, Skov LK, Egebjerg J, Gajhede M, and Kastrup JS (2005) Crystal structure of the kainate receptor GluR5 ligand-binding core in complex with (S)-glutamate. FEBS Lett 579:1154-1160. (Pubitemid 40253550)
-
(2005)
FEBS Letters
, vol.579
, Issue.5
, pp. 1154-1160
-
-
Naur, P.1
Vestergaard, B.2
Skov, L.K.3
Egebjerg, J.4
Gajhede, M.5
Kastrup, J.S.6
-
39
-
-
0037671391
-
Interdomain dynamics and ligand binding: Molecular dynamics simulations of glutamine binding protein
-
DOI 10.1016/S0014-5793(03)00866-4
-
Pang A, Arinaminpathy Y, Sansom MSP, and Biggin PC (2003) Interdomain dynamics and ligand binding: molecular dynamics simulations of glutamine binding protein. FEBS Lett 550:168-174. (Pubitemid 37281376)
-
(2003)
FEBS Letters
, vol.550
, Issue.1-3
, pp. 168-174
-
-
Pang, A.1
Arinaminpathy, Y.2
Sansom, M.S.P.3
Biggin, P.C.4
-
41
-
-
0032486422
-
The tetrameric structure of a glutamate receptor channel
-
DOI 10.1126/science.280.5369.1596
-
Rosenmund C, Stern-Bach Y, and Stevens CF (1998) The tetrameric structure of a glutamate receptor channel. Science (Wash DC) 280:1596-1599. (Pubitemid 28277703)
-
(1998)
Science
, vol.280
, Issue.5369
, pp. 1596-1599
-
-
Rosenmund, C.1
Stern-Bach, Y.2
Stevens, C.F.3
-
42
-
-
0035923431
-
First images of a glutamate receptor ion channel: Oligomeric state and molecular dimensions of GluRB homomers
-
DOI 10.1021/bi011143g
-
Safferling M, Tichelaar W, Kummerle G, Jouppila A, Kuusinen A, Keinanen K, and Madden DR (2001) First images of a glutamate receptor ion channel: oligomeric state and molecular dimensions of GluRB homomers. Biochemistry 40:13948-13953. (Pubitemid 33078864)
-
(2001)
Biochemistry
, vol.40
, Issue.46
, pp. 13948-13953
-
-
Safferling, M.1
Tichelaar, W.2
Kummerle, G.3
Jouppila, A.4
Kuusinen, A.5
Keinanen, K.6
Madden, D.R.7
-
43
-
-
0031015614
-
Single-channel properties of recombinant AMPA receptors depend on RNA editing, splice variation, and subunit composition
-
Swanson GT, Kamboj SK, and Cull-Candy SG (1997) Single-channel properties of recombinant AMPA receptors depend on RNA editing, splice variation and subunit composition. J Neurosci 17:58-69. (Pubitemid 27008850)
-
(1997)
Journal of Neuroscience
, vol.17
, Issue.1
, pp. 58-69
-
-
Swanson, G.T.1
Kamboj, S.K.2
Cull-Candy, S.G.3
-
44
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace AC, Laskowski RA, and Thornton JM (1995) LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Prot Eng 8:127-134.
-
(1995)
Prot Eng
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
45
-
-
0030883755
-
Protein domain movements: Detection of rigid domains and visualization of hinges in comparisons of atomic coordinates
-
DOI 10.1002/(SICI)1097-0134(199709)29:1<1::AID-PROT1>3.0.CO;2-J
-
Wriggers W and Schulten K (1997) Protein domain movements: detection of rigid domains and visualization of hinges in comparison of atomic coordinates. Proteins Struct Funct Genet 29:1-14. (Pubitemid 27377415)
-
(1997)
Proteins: Structure, Function and Genetics
, vol.29
, Issue.1
, pp. 1-14
-
-
Wriggers, W.1
Schulten, K.2
-
46
-
-
0032790229
-
Subunit- and site-specific pharmacology of the NMDA receptor channel
-
DOI 10.1016/S0301-0082(99)00007-6, PII S0301008299000076
-
Yamakura T and Shimoji K (1999) Subunit and site specific pharmacology of the NMDA receptor channel. Prog Neurobiol 59:279-298. (Pubitemid 29325000)
-
(1999)
Progress in Neurobiology
, vol.59
, Issue.3
, pp. 279-298
-
-
Yamakura, T.1
Shimoji, K.2
|