Quantitative detection of individual cleaved DNA molecules on surfaces using gold nanoparticles and scanning electron microscope imaging

Analytical Chemistry

Volumn 78, Issue 5, 2006, Pages 1528-1534

  Nie, Bei ^a   Shortreed, Michael R ^a   Smith, Lloyd M ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLICON MOLECULES; BACKGROUND FLUORESCENCE; CLEAVED DNA MOLECULES; ROLLING CIRCLE AMPLIFICATION; SINGLE-NUCLEOTIDE POLYMORPHISMS;

COMPUTER SOFTWARE; DNA; FLUORESCENCE; GENES; GOLD; IMAGING TECHNIQUES; MICROSCOPIC EXAMINATION; SCANNING; SILICON;

NANOSTRUCTURED MATERIALS;

GENOMIC DNA; GOLD; SILICON;

AMPLICON; ARTICLE; DNA CLEAVAGE; DNA DETERMINATION; FLUORESCENCE; FLUORESCENCE MICROSCOPY; GENE AMPLIFICATION; GENETIC VARIABILITY; HUMAN; NANOPARTICLE; SCANNING ELECTRON MICROSCOPY; SIGNAL NOISE RATIO; SINGLE NUCLEOTIDE POLYMORPHISM;

DNA; DNA MUTATIONAL ANALYSIS; GENOMICS; GOLD; HUMANS; METAL NANOPARTICLES; MICROSCOPY, ELECTRON, SCANNING; OLIGONUCLEOTIDES; POINT MUTATION; POLYMORPHISM, SINGLE NUCLEOTIDE; SURFACE PROPERTIES;

EID: 33644784882     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac052067g     Document Type: Article

References (28)

1. Wang, W.; Barratt, B. J.; Clayton, D. G.; Todd, J. A. Nat. Rev. Genet. 2005, 6, 109-118.
2. Kruglyak, L. Nat. Genet. 1997, 17, 21-24.
3. Stoneking, M. Nature 2001, 409, 821-822.
4. Thorisson, G. A.; Stein, L. D. Nucleic Acids Res. 2003, 31, 124-127.
5. Chakravarti, A. Nature 2001, 409, 822-823.
6. Risch, N.; Merikangas, K. Science 1996, 273, 1516-1517.
7. Lyamichev, V.; Mast, A. L.; Hall, J. G.; Prudent, J. R.; Kaiser, M. W.; Takova, T.; Kwiatkowski, R. W.; Sander, T. J.; de Arruda, M.; Arco, D. A.; Neri, B. P.; Brow, M. A. D. Nat. Biotechnol. 1999, 17, 292-296.
8. Eis, P. S.; Olson, M. C.; Takova, T.; Curtis, M. L.; Olson, S. M.; Vener, T. I.; Ip, H. S.; Vedvik, K. L.; Bartholomay, C. T.; Allawi, H. T.; Ma, W.; Hall, J. G.; Morin, M. D.; Rushmore, T. H.; Lyamichev, V.; Kwiatkowski, R. W. Nat. Biotechnol. 2001, 19, 673-676.
9. Lyamichev, V.; Brow, M. A. D.; Varvel, V. E.; Dahlberg, J. E. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6143-6148.
10. Lyamichev, V.; Kaiser, M. W.; Lyamicheva, N. E.; Vologodskii, A. V.; Hall, J. G.; Ma, W.; Allawi, H. T.; Neri, B. P. Biochemistry 2000, 39, 9523-9532.
11. Hall, J. G.; Eis, P. S.; Law, S. M.; Reynaldo, L. P.; Prudent, J. R.; Marshall, D. J.; Allawi, H. T.; Mast, A. L.; Dahlberg, J. E.; Kwiatkowski, R. W.; de Arruda, M.; Neri, B. P.; Lyamichev, V. I. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 8272-8277.
12. Chen, Y.; Shortreed, M. R.; Olivier, M.; Smith, L. M. Anal. Chem. 2005, 77, 2400-2405.
13. Nallur, G.; Luo, C.; Fang, L.; Cooley, S.; Dave, V.; Lambert, J.; Kukanskis, K.; Kingsmore, S.; Lasken, R.; Schweitzer, B. Nucleic Acids Res. 2001, 29, 23 e118.
14. Nie, B.; Shortreed, M. R.; Smith, L. M. Anal. Chem. 2005, 77, 6594-6600.
15. Levit-Binnun, N.; Lindner, A. B.; Zik, O.; Eshhar, Z.; Moses, E. Anal. Chem. 2003, 75, 1436-1441
16. Grubisha, D. S.; Lipert, R. J.; Park, H.-Y.; Driskell, J.; Porter, M. D. Anal. Chem. 2003, 75, 5936-5943
17. Nam, J. M.; Thaxton, C. S.; Mirkin, C. A. Science 2003, 301, 1884-1886.
18. Taton, T. A.; Mirkin, C. A.; Letsinger, R. L. Science 2000, 289, 1757-1760.
19. Brookes, A. J. Gene 1999, 234, 177-186.
20. User Guide to DNA Modification and Labeling; Glen Research Corporation: Sterling, VA, 1996.
21. Lu, M.; Hall, J. G.; Shortreed, M. R.; Wang, L.; Berggren, W. T.; Stevens, P. W.; Kelso, D. M.; Lyamichev, V.; Neri, B.; Skinner, J. L.; Smith, L. M. J. Am. Chem. Soc. 2002, 124, 7924-7931.
22. Cai, W.; Lin, Z.; Strother, T.; Smith, L. M.; Hamers, R. J. J. Phys. Chem. B 2002, 106, 2656-2664.
23. Knickerbocker, T.; Strother, T.; Schwartz, M. P.; Russell, J. N., Jr.; Butler, J.; Smith, L. M.; Hamers, R. J. Langmuir 2003, 19, 1938-1942.
24. Chen, Y.; Shortreed, M. R.; Peelen, D.; Lu, M.; Smith, L. M. J. Am. Chem. Soc. 2004, 126, 3016-3017.
25. Peelen, D.; Smith, L. M. Langmuir 2005, 21, 266-271.
26. Boots, B. N.; Arthur, G. Point Pattern Analysis; Sage University, 1988.
27. Diggle, P. J. J. R. Stat. Soc. A 1990, 153, 349-362.
28. Yang, W.; Auciello, O.; Butler, J. E.; Cai, W.; Carlisle, J. A.; Gerbi, J. E.; Gruen, D. M.; Knickerbocker, T.; Lasseter, T. L.; Russell, J. N., Jr.; Smith, L. M.; Hamers, R. J. Nat. Mater. 2002, 1, 253-257.