Genetic data and plant domestication

Documenting Domestication: New Genetic and Archaeological Paradigms

Volumn , Issue , 2006, Pages 99-122

  Emshwiller, Eve ^a,b  

^a FIELD MUSEUM OF NATURAL HISTORY   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

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EID: 33344455541     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (247)

1. Abbo, S., S. Lev-Yadun, and G. Ladizinsky. 2001. Tracing the wild genetic stocks of crop plants. Genome 44: 309-310.
2. Allaby, R. G. and T. A. Brown. 2003. AFLP data and the origins of domesticated crops. Genome 46: 448-453.
3. Anderson, E. and L. Hubricht. 1938. Hybridization in Tradescantia. III. The evidence for introgressive hybridization. American Journal of Botany 25: 396-402.
4. Anthony, F., M. C. Combes, C. Astorga, B. Bertrand, G. Graziosi, and P. Lashermes. 2002. The origin of cultivated Coffea arabica L. varieties revealed by AFLP and SSR markers. Theoretical and Applied Genetics 104: 894-900.
5. Atkinson, R. G., G. Cipriani, D. J. Whittaker, and R. C. Gardner. 1997. The allopolyploid origin of kiwifruit, Actinidia deliciosa (Actinidiaceae). Plant Systematics and Evolution 205: 111-124.
6. Badr, A., K. Muller, R. Schafer-Pregl, H. El Rabey, S. Effgen, H. H. Ibrahim, C. Pozzi, W. Rohde, and F. Salamini. 2000. On the origin and domestication history of barley (Hordeum vulgare). Molecular Biology & Evolution 17: 499-510.
7. Barrett, S. C. H. 1983. Crop mimicry in weeds. Economic Botany 37: 255-282.
8. Baumel, A., M. Ainouche, R. Kalendar, and A. H. Schulman. 2002. Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C.E. Hubbard (Poaceae). Molecular Biology and Evolution 19: 1218-1227.
9. Beadle, G. W. 1939. Teosinte and the origin of maize. Journal of Heredity 30: 245-247.
10. Beadle, G. W. 1972. The mystery of maize. Field Museum of Natural History Bulletin 43:2-11.
11. Becerra Velasquez, V. L. and P. Gepts. 1994. RFLP diversity of common bean (Phaseolus vulgaris) in its centers of origin. Genome 37: 256-263.
12. Beebe, S., O. Toro, A. V. Gonzalez, M. I. Chacon, and D. G. Debouck. 1997. Wild-weed-crop complexes of common bean (Phaseolus vulgaris L, Fabaceae) in the Andes of Peru and Colombia, and their implications for conservation and breeding. Genetic Resources and Crop Evolution 44: 73-91.
13. Benavente, E. and J. Orellana. 1989. Pairing competition between identical and homologous chromosomes in autotetraploid rye heterozygous for interstitial C-Bands. Chromosoma 98: 225-232.
14. Benavente, E. 1991. Chromosome differentiation and pairing behavior of polyploids-An assessment on preferential metaphase-I associations in colchicine-induced autotetraploid hybrids within the genus Secale. Genetics 128: 433-442.
15. Bennetzen, J., E. Buckler, V. Chandler, J. Doebley, J. Dorweiler, B. Gaut, M. Freeling, S. Hake, E. Kellogg, R. S. Poethig, V. Walbot, and S. Wessler. 2001. Genetic evidence and the origin of maize. Latin American Antiquity 12: 84-86.
16. Bernacchi, D., T. Beck Bunn, Y. Eshed, Y. Lopez, V. Petiard, J. Uhlig, D. Zamir, and S. Tanksley. 1998. Advanced backcross QTL analysis in tomato. I. Identification of QTLs for traits of agronomic importance from Lycopersicon hirsutum. Theoretical and Applied Genetics 97: 381-397.
17. Blattner, F. R. and A. G. Badani Mendez. 2001. RAPD data do not support a second centre of barley domestication in Morocco. Genetic Resources and Crop Evolution 48. 13-19.
18. Blumler, M. A. 1992. Independent inventionism and recent genetic evidence on plant domestication. Economic Botany 46: 98-111.
19. Bretó, M. P., C. Ruiz, J. A. Pina, and M. J. Asíns. 2001. The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species. Molecular Phylogenetics and Evolution 21: 285-293.
20. Brown, T. A. 1999. How ancient DNA may help in understanding the origin and spread of agriculture. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 354: 89-97.
21. Brubaker, C. L., A. H. Paterson, and J. F. Wendel. 1999. Comparative genetic mapping of allotetraploid cotton and its diploid progenitors. Genome 42: 184-203.
22. Buckler, E. S. IV and T. P. Holtsford. 1996. Zea systematics: ribosomal ITS evidence. Molecular Biology and Evolution 13: 612-622.
23. Buckler, E. S. IV, J. M. Thornsberry, and S. Kresovich. 2001. Molecular diversity, structure and domestication of grasses. Genetical Research 77: 213-218.
24. Burke, J. M., K. A. Gardner, and L. H. Rieseberg. 2002a. The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States. American Journal of Botany 89: 1550-1552.
25. Burke, J. M., K. A. Gardner, and L. H. Rieseberg. 2002b. Genetic analysis of sunflower domestication. Genetics 161: 1257-1267.
26. Cai, H. W. and H. Morishima. 2000. Genomic regions affecting seed shattering and seed dormancy in rice. Theoretical and Applied Genetics 100: 840-846.
27. Cai, H. W. and H. Morishima. 2002. QTL clusters reflect character associations in wild and cultivated rice. Theoretical and Applied Genetics 104: 1217-1228.
28. Chang, R. Y., L. S. O'Donoughue, and T. E. Bureau. 2001. Inter-MITE polymorphisms (IMP): a high throughput transposonbased genome mapping and fingerprinting approach. Theoretical and Applied Genetics 102: 773-781.
29. Cong, B., J. Liu, and S. D. Tanksley. 2002. Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations. Proceedings of the National Academy of Sciences of the United States of America 99: 13606-13611.
30. Coulibaly, S., R. S. Pasquet, R. Papa, and P. Gepts. 2002. AFLP analysis of the phenetic organization and genetic diversity of Vigna unguiculata L. Walp. reveals extensive gene flow between wild and domesticated types. Theoretical and Applied Genetics 104: 358-366.
31. Cronn, R., M. Cedroni, T. Haselkorn, C. Grover, and J. F. Wendel. 2002. PCR-mediated recombination in amplification products derived from polyploid cotton. Theoretical and Applied Genetics 104: 482-489.
32. Cros, J., M. C. Combes, P. Trouslot, F. Anthony, S. Hamon, A. Charrier, and P. Lashermes. 1998. Phylogenetic analysis of chloroplast DNA variation in Coffea L. Molecular Phylogenetics and Evolution 9: 109-117.
33. Cutler, H. C. 1946. Races of maize in South America. Cambridge, MA: Botanical Museum, Harvard University.
34. Darwin, C. 1883. The variation of animals and plants under domestication, 2nd Edition. New York: D. Appleton.
35. Debouck, D. G., O. Toro, O. M. Paredes, W. C. Johnson, and P. Gepts. 1993. Genetic diversity and ecological distribution of Phaseolus vulgaris (Fabaceae) in northwestern South America. Economic Botany 47: 408-423.
36. de Candolle, A. 1884. Origin of cultivated plants. London, UK: Trench.
37. Decker, D. S. 1985. Numerical analysis of allozyme variation in Cucurbita pepo. Economic Botany 39: 300-309.
38. Decker, D. S. 1988. Origin(s), evolution, and systematics of Cucurbita pepo (Cucurbitaceae). Economic Botany 42: 4-15.
39. Decker, D. S. and H. D. Wilson. 1986. Numerical analysis of seed morphology in Cucurbita pepo. Systematic Botany 11: 595-607.
40. Decker, D. S. and H. D. Wilson. 1987. Allozyme variation in the Cucurbita pepo complex Cucurbita pepo var. ovifera vs. Cucurbita texana. Systematic Botany 12: 263-273.
41. Decker-Walters, D. S., T. W. Walters, C. W. Cowan, and B. D. Smith. 1993. Isozymic characterization of wild populations of Cucurbita pepo. Journal of Ethnobiology 13: 55-72.
42. Decker-Walters, D. S., J. E. Staub, S. M. Chung, E. Nakata, and H. D. Quemada. 2002. Diversity in free-living populations of Cucurbita pepo (Cucurbitaceae) as assessed by random amplified polymorphic DNA. Systematic Botany 27: 19-28.
43. de Wet, J. M. J. and J. R. Harlan. 1975. Weeds and domesticates: Evolution in the man-made habitat. Economic Botany 29: 99-109.
44. Diamond, J. 1997. Guns, germs, and steel: The fates of human societies. New York: Norton.
45. Doebley, J. 1989. Isozymic evidence and the evolution of crop plants. In Isozymes in plant biology, D. E. Soltis and P. S. Soltis (eds.), pp. 165-191. Portland, Or.: Dioscorides Press.
46. Doebley, J. 1990a. Molecular evidence and the evolution of maize. Economic Botany 44: 6-27.
47. Doebley, J. 1990b. Molecular evidence for gene flow among Zea species-Genes transformed into maize through genetic engineering could be transferred to its wild relatives, the teosintes. Bioscience 40: 443-448.
48. Doebley, J. 1992a. Mapping the genes that made maize. Trends in Genetics 8: 302-307.
49. Doebley, J. 1992b. Molecular systematics and crop evolution. In Molecular Systematics of Plants, P. S. Soltis, D. E. Soltis, and J. J. Doyle (eds.), pp. 202-222. New York: Chapman and Hall.
50. Doebley, J. 1995. Genetic dissection of the morphological evolution of maize. Aliso 14: 297-304.
51. Doebley, J. 2001. George Beadle's other hypothesis: One-gene, one-trait. Genetics 158. 487-493.
52. Doebley, J. and A. Stec. 1991. Genetic analysis of the morphological differences between maize and teosinte. Genetics 129: 285-295.
53. Doebley, J. 1993. Inheritance of the morphological differences between maize and teosinte: Comparison of results for two F-2 populations. Genetics 134: 559-570.
54. Doebley, J. and R. L. Wang. 1997. Genetics and the evolution of plant form: An example from maize. Cold Spring Harbor Symposia on Quantitative Biology 62: 361-367.
55. Doebley, J. F., M. M. Goodman, and C. W. Stuber. 1984. Isoenzymatic variation in Zea (Gramineae). Systematic Botany 9: 203-218.
56. Doebley, J., M. M. Goodman, and C. W. Stuber. 1987a. Patterns of isozyme variation between maize and Mexican annual teosinte. Economic Botany 41: 234-246.
57. Doebley, J., W. Renfroe, and A. Blanton. 1987b. Restriction site variation in the Zea chloroplast genome. Genetics 117: 139-148.
58. Doebley, J., A. Bacigalupo, and A. Stec. 1994. Inheritance of kernel weight in two maize-teosinte hybrid populations: Implications for crop evolution. Journal of Heredity 85: 191-195.
59. Doebley, J., A. Stec, and C. Gustus. 1995a. Teosinte branched1 and the origin of maize: Evidence for epistasis and the evolution of dominance. Genetics 141: 333-346.
60. Doebley, J., A. Stec, and B. Kent. 1995b. Suppressor of sessile spikelets1 (Sos1): A dominant mutant affecting inflorescence development in maize. American Journal of Botany 82: 571-577.
61. Doganlar, S., A. Frary, M.-C. Daunay, R. N. Lester, and S. D. Tanksley. 2002. Conservation of gene function in the Solanaceae as revealed by comparative mapping of domestication traits in eggplant. Genetics 161: 1713-1726.
62. Dorweiler, J. E. and J. Doebley. 1997. Developmental analysis of teosinte glume architecture1: A key locus in the evolution of maize (Poaceae). American Journal of Botany 84: 1313-1322.
63. Dorweiler, J., A. Stec, J. Kermicle, and J. Doebley. 1993. Teosinte glume architecture1: A genetic locus controlling a key step in maize evolution. Science 262: 233-235.
64. Doyle, J. J. 1992. Gene trees and species trees: Molecular systematics as one-character taxonomy. Systematic Botany 17: 144-163.
65. Doyle, J. J. and R. N. Beachy. 1985. Ribosomal gene variation in soybean (Glycine) and its relatives. Theoretical and Applied Genetics 70: 369-376.
66. Doyle, J. J. and J. L. Doyle. 1999. Nuclear protein-coding genes in phylogeny reconstruction and homology assessment: Some examples from Leguminosae. In Molecular systematics and plant evolution, P. M. Hollingsworth, R. M. Bateman and R. J. Gornall (eds.), pp. 229-254. London: Taylor& Francis.
67. Doyle, J. J. and B. S. Gaut. 2000. Evolution of genes and taxa: A primer. Plant Molecular Biology 42: 1-23.
68. Doyle, J. J., M. Morgante, S. V. Tingey, and W. Powell. 1998. Size homoplasy in chloroplast microsatellites of wild perennial relatives of soybean (Glycine subgenus Glycine). Molecular Biology and Evolution 15: 215-218.
69. Ellstrand, N. C. and M. L. Roose. 1987. Patterns of genotypic diversity in clonal plant species. American Journal of Botany 74: 123-131.
70. Ellstrand, N. C., H. C. Prentice, and J. F. Hancock. 1999. Gene flow and introgression from domesticated plants into their wild relatives. Annual Review of Ecology and Systematics 30: 539-563.
71. Eubanks, M. W. 1995. A cross between 2 maize relatives-Tripsacum dactyloides and Zea diploperennis (Poaceae). Economic Botany 49: 172-182.
72. Eubanks, M. W. 1997. Molecular analysis of crosses between Tripsacum dactyloides and Zea diploperennis (Poaceae). Theoretical and Applied Genetics 94: 707-712.
73. Eubanks, M. W. 2001a. An interdisciplinary perspective on the origin of maize. Latin American Antiquity 12: 91-98.
74. Eubanks, M. W. 2001b. The mysterious origin of maize. Economic Botany 55: 492-514.
75. Eubanks, M. W. 2001c. The origin of maize: Evidence for Tripsacum ancestry. Plant Breeding Reviews 20: 15-66.
76. Eyre-Walker, A., R. L. Gaut, H. Hilton, D. L. Feldman, and B. S. Gaut. 1998. Investigation of the bottleneck leading to the domestication of maize. Proceedings of the National Academy of Sciences of the United States of America 95: 4441-4446.
77. Feldman, M. and E. Millet. 2001. The contribution of the discovery of wild emmer to an understanding of wheat evolution and domestication and to wheat improvement. Israel Journal of Plant Sciences 49: S25-S35.
78. Flavell, A. J., M. R. Knox, S. R. Pearce, and T. H. N. Ellis. 1998. Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant Journal 16: 643-650.
79. Frary, A. and S. Doganlar. 2003. Comparative genetics of crop plant domestication and evolution. Turkish Journal of Agriculture and Forestry 27: 59-69.
80. Frary, A., T. C. Nesbitt, A. Frary, S. Grandillo, E. van der Knaap, B. Cong, J. Liu, J. Meller, R. Elber, K. B. Alpert, and S. Tanksley. 2000. fw2.2: A quantitative trait locus key to the evolution of tomato fruit size. Science 289: 85-88.
81. Freitas, F. O., G. Bendel, R. G. Allaby, and T. A. Brown. 2003. DNA from primitive maize landraces and archaeological remains: Implications for the domestication of maize and its expansion into South America. Journal of Archaeological Science 30: 901-908.
82. Freyre, R., R. Rios, L. Guzman, D. G. Debouck, and P. Gepts. 1996. Ecogeographic distribution of Phaseolus spp (Fabaceae) in Bolivia. Economic Botany 50: 195-215.
83. Gaut, B. S. 1998. Molecular clocks and nucleotide substitution rates in higher plants. In Evolutionary biology, Volume 30, M. K. Hecht, R. J. Macintyre, and M. T. Clegg (eds.), pp. 93-120. New York and London: Plenum Press.
84. Gaut, B. S. 2001 Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Research 11: 55-66.
85. Gaut, B. S. and M. T. Clegg. 1993. Nucleotide polymorphism in the Adh1 locus of pearl millet (Pennisetum glaucum) (Poaceae). Genetics 135: 1091-1097.
86. Gaut, B. S. and J. F. Doebley. 1997. DNA sequence evidence for the segmental allotetraploid origin of maize. Proceedings of the National Academy of Sciences of the United States of America 94: 6809-6814.
87. Gaut, B. S. and B. S. Weir. 1994. Detecting substitution-rate heterogeneity among regions of a nucleotide sequence. Molecular Biology and Evolution 11: 620-629.
88. Gaut, B. S., M. Le Thierry d'Ennequin, A. S. Peek, and M. C. Sawkins. 2000. Maize as a model for the evolution of plant nuclear genomes. Proceedings of the National Academy of Sciences of the United States of America 97: 7008-7015.
89. Gepts, P. 1990a. Biochemical evidence bearing on the domestication of Phaseolus (Fabaceae) beans. Economic Botany 44: 28-38.
90. Gepts, P. 1990b. Genetic diversity of seed storage proteins in plants. In Plant population genetics, breeding, and genetic resources, A. H. D. Brown, M. T. Clegg, A. L. Kahler, and B. S. Weir (eds.), pp. 64-82. Sunderland, Mass.: Sinauer Associates Inc.
91. Gepts, P. 1993 The use of molecular and biochemical markers in crop evolution studies. Evolutionary Biology 27: 51-94.
92. Gepts, P. 1996. Origin and evolution of cultivated Phaseolus species. In Advances in legume systematics (Part 8): Legumes of economic importance, B. Pickersgill and J. M. Lock (eds.), pp. 65-74. Kew: Royal Botanic Gardens.
93. Gepts, P. and F. A. Bliss. 1985. F1 hybrid weakness in the common bean-Differential geographic origin suggests two gene pools in cultivated bean germplasm. Journal of Heredity 76: 447-450.
94. Gepts, P. 1986. Phaseolin variability among wild and cultivated common beans (Phaseolus vulgaris) from Colombia. Economic Botany 40: 469-478.
95. Gepts, P., T. C. Osborn, K. Rashka, and F. A. Bliss. 1986. Phaseolin protein variability in wild forms and landraces of the common bean (Phaseolus vulgaris)-Evidence for multiple centers of domestication. Economic Botany 40: 451-468.
96. Goloubinoff, P., S. Pääbo, and A. C. Wilson. 1993. Evolution of maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens. Proceedings of the National Academy of Sciences of the United States of America 90: 1997-2001.
97. Goloubinoff, P., S. Pääbo, and A. C. Wilson. 1994. Molecular characterization of ancient maize: Potentials and pitfalls. In Corn and culture in the prehistoric New World, S. Johannessen and C. A. Hastorf (eds.), pp. 113-125. Boulder, Colo.: Westview Press.
98. Grant, T., J. Faivovicha, and D. Pola. 2003. The perils of "pointand-click" systematics. Cladistics 19: 276-285.
99. Graur, D. and W. Martin. 2004. Reading the entrails of chickens: Molecular timescales of evolution and the illusion of precision. Trends in Genetics 20: 80-86.
100. Hammer, K. 1984. Das Domestikationssyndrom. Kulturpflanze 32: 11-34.
101. Hamrick, J. L. and M. J. W. Godt. 1990. Allozyme diversity in plant species. In Plant population genetics, breeding, and genetic resources, A. H. D. Brown, M. T. Clegg, A. L. Kahler, and B. S. Weir (eds.), pp. 43-63. Sunderland, Mass.: Sinauer Associates Inc.
102. Hamrick, J. L. and M. J. W. Godt. 1996. Effects of life history traits on genetic diversity in plant species. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 351: 1291-1298.
103. Hanson, M. A., B. S. Gaut, A. O. Stec, S. I. Fuerstenberg, M. M. Goodman, E. H. Coe, and J. F. Doebley. 1996. Evolution of anthocyanin biosynthesis in maize kernels: The role of regulatory and enzymatic loci. Genetics 143: 1395-1407.
104. Harlan, J. R. 1971. Agricultural origins: Centers and noncenters. Science 174: 468-473.
105. Harlan, J. R. 1992. Crops and man, 2nd edition. Madison, Wisc.: American Society of Agronomy, Crop Science Society of America.
106. Harlan, J. R., J. M. J. de Wet, and E. G. Price. 1973. Comparative evolution of cereals. Evolution 27: 311-325.
107. Heiser, C. B., Jr. 1949. Natural hybridization with particular reference to introgression. Botanical Review 49: 645-687.
108. Heiser, C. B. 1973. Introgression reexamined. Botanical Review 39: 347-366.
109. Heiser, C. B. 1988. Aspects of unconscious selection and the evolution of domesticated plants. Euphytica 37: 77-81.
110. Heiser, C. B. 1985. Some botanical considerations on the early domesticated plants north of Mexico. In Prehistoric food production in North America, R. I. Ford (ed.), pp. 57-72. Ann Arbor, Mich.: Museum of Anthropology, University of Michigan.
111. Heun, M., R. SchaferPregl, D. Klawan, R. Castagna, M. Accerbi, B. Borghi, and F. Salamini. 1997. Site of einkorn wheat domestication identified by DNA fingerprinting. Science 278: 1312-1314.
112. Hilton, H. and B. S. Gaut. 1998. Speciation and domestication in maize and its wild relatives: Evidence from the globulin-1 gene. Genetics 150: 863-872.
113. Hilu, K. W. and H. T. Stalker. 1995. Genetic relationships between peanut and wild species of Arachis sect Arachis (Fabaceae): Evidence from RAPDs. Plant Systematics and Evolution 198: 167-178.
114. Iltis, H. H. 1983. From teosinte to maize-the catastrophic sexual transmutation. Science 222: 886-894.
115. Iltis, H. H. 2000. Homeotic sexual translocations and the origin of maize (Zea mays, Poaceae): A new look at an old problem. Economic Botany 54: 7-42.
116. Ingram, A. L. and J. J. Doyle. 2003. The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: Evidence from nuclear waxy and plastid rps16. American Journal of Botany 90:116-122.
117. Iqbal, M. J., O. U. K. Reddy, K. M. El-Zik, and A. E. Pepper. 2001. A genetic bottleneck in the "evolution under domestication" of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theoretical and Applied Genetics 103: 547-554.
118. Ishii, T., N. Mori, and Y. Ogihara. 2001. Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species. Theoretical and Applied Genetics 103: 896-904.
119. Islam, F. M. A., K. E. Basford, R. J. Redden, A. V. Gonzalez, P. M. Kroonenberg, and S. Beebe. 2002. Genetic variability in cultivated common bean beyond the two major gene pools. Genetic Resources and Crop Evolution 49: 271-283.
120. Jaenicke-Després, V., E. S. Buckler, B. D. Smith, M. T. P. Gilbert, A. Cooper, J. Doebley, and S. Pääbo. 2003. Early Allelic selection in maize as revealed by ancient DNA. Science 302:1206-1208.
121. Jiang, C. X., R. J. Wright, K. M. El-Zik, and A. H. Paterson. 1998. Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proceedings of the National Academy of Sciences, USA 95: 4419-4424.
122. Johns, T. 1989. A chemical-ecological model of root and tuber domestication in the Andes. In Foraging and farming-The evolution of plant exploitation, D. R. Harris and G. C. Hillman (eds.), pp. 504-519. London: Unwin Hyman.
123. Johns, T. and J. G. Alonso. 1990. Glycoalkaloid change during the domestication of the potato, Solanum section Petota. Euphytica 50: 203-210.
124. Jones, C. J., K. J. Edwards, S. Castaglione, M. O. Winfield, F. Sala, C. VandeWiel, G. Bredemeijer, B. Vosman, M. Matthes, A. Daly, R. Brettschneider, P. Bettini, M. Buiatti, E. Maestri, A. Malcevschi, N. Marmiroli, R. Aert, G. Volckaert, J. Rueda, R. Linacero, A. Vazquez, and A. Karp. 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding 3: 381-390.
125. Jones, M. and T. Brown. 2000. Agricultural origins: The evidence of modern and ancient DNA. Holocene 10: 769-776.
126. Jung, S., P. L. Tate, R. Horn, G. Kochert, K. Moore, and A. G. Abbott. 2003. The phylogenetic relationship of possible progenitors of the cultivated peanut. Journal of Heredity 94: 334-340.
127. Kalendar, R., T. Grob, M. Regina, A. Suoniemi, and A. Schulman. 1999. IRAP and REMAP: Two new retrotransposon-based DNA fingerprinting techniques. Theoretical and Applied Genetics 98: 704-711.
128. Katzir, N., Y. Tadmor, G. Tzuri, E. Leshzeshen, N. Mozes-Daube, Y. Danin-Poleg, and H. S. Paris. 2000. Further ISSR and preliminary analysis of relationships among accessions of Cucurbita pepo. Acta Horticulturae 510: 433-439.
129. Kellogg, E. A. 2003. What happens to genes in duplicated genomes. Proceedings of the National Academy of Sciences, USA 100: 4369-4371.
130. Kirkpatrick, K. J., D. S. Decker, and H. D. Wilson. 1985. Allozyme differentiation in the Cucurbita pepo complex Cucurbita pepo var. medullosa vs. Cucurbita texana. Economic Botany 39: 289-299.
131. Koenig, R. and P. Gepts. 1989. Segregation and linkage of genes for seed proteins, isozymes, and morphological traits in common bean (Phaseolus vulgaris). Journal of Heredity 80: 455-459.
132. Koinange, E. M. K. and P. Gepts. 1992. Hybrid weakness in wild Phaseolus vulgaris L. Journal of Heredity 83: 135-139.
133. Koinange, E. M. K., S. P. Singh, and P. Gepts. 1996. Genetic control of the domestication syndrome in common bean. Crop Science 36: 1037-1045.
134. Kumar, A. and H. Hirochika. 2001. Applications of retrotransposons as genetic tools in plant biology. Trends in Plant Science 6: 127-134.
135. Ladizinsky, G. 1985. Founder effect in crop-plant evolution. Economic Botany 39: 191-199.
136. Ladizinsky, G. and A. Genizi. 2001. Could early gene flow have created similar allozyme-gene frequencies in cultivated and wild barley? Genetic Resources and Crop Evolution 48.101-104.
137. Le Thierry D'Ennequin, M., B. Toupance, T. Robert, B. Godelle, and P. Gouyon. 1999. Plant domestication: A model for studying the selection of linkage. Journal of Evolutionary Biology 12: 1138-1147.
138. Levy, A. A. and M. Feldman. 2002. The impact of polyploidy on grass genome evolution. Plant Physiology 130: 1587-1593.
139. Li, G. and C. F. Quirós. 2001. Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theoretical and Applied Genetics 103: 455-461.
140. Lukens, L. and J. Doebley. 2001. Molecular evolution of the teosinte branched gene among maize and related grasses. Molecular Biology and Evolution 18: 627-638.
141. MacNeish, R. S. and M. W. Eubanks. 2000. Comparative analysis of the Río Balsas and Tehuacán models for the origin of maize. Latin American Antiquity 11: 3-20.
142. Manen, J. F., L. Bouby, O. Dalnoki, P. Marinval, M. Turgay, and A. Schlumbaum. 2003. Microsatellites from archaeological Vitis vinifera seeds allow a tentative assignment of the geographical origin of ancient cultivars. Journal of Archaeological Science 30: 721-729.
143. Mangelsdorf, P. C. and R. G. Reeves. 1939. The origin of Indian corn and its relatives. Texas Agricultural Experiment Station Bulletin 574: 1-315.
144. Mason-Gamer, R. J. 2001. Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule-bound starch synthase gene sequences. Systematic Botany 26: 757-768.
145. Matsuoka, Y., Y. Vigouroux, M. M. Goodman, G. J. Sanchez, E. Buckler, and J. Doebley. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proceedings of the National Academy of Sciences, USA 99: 6080-6084.
146. McClintock, B. 1929. Chromosome morphology in Zea mays. Science 69: 629.
147. McGregor, C. E., C. A. Lambert, M. M. Greyling, J. H. Louw, and L. Warnich. 2000. A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm. Euphytica 113: 135-144.
148. Milbourne, D., R. Meyer, J. E. Bradshaw, E. Baird, N. Bonar, J. Provan, W. Powell, and R. Waugh. 1997. Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato. Molecular Breeding 3: 127-136.
149. Molina-Cano, J. L., M. Moralejo, E. Igartua, and I. Romagosa. 1999. Further evidence supporting Morocco as a centre of origin of barley. Theoretical and Applied Genetics 98: 913-918.
150. Morgante, M. and A. M. Olivieri. 1993. PCR-amplified microsatellites as markers in plant genetics. The Plant Journal 3: 175-182.
151. Nee, M. 1990. The domestication of Cucurbita (Cucurbitaceae). Economic Botany 44: 56-68.
152. Nesbitt, T. C. and S. D. Tanksley. 2002. Comparative sequencing in the genus Lycopersicon: Implications for the evolution of fruit size in the domestication of cultivated tomatoes. Genetics 162: 365-379.
153. Nixon, K. C. and Q. D. Wheeler. 1990. An amplification of the phylogenetic species concept. Cladistics 6: 211-223.
154. Nybom, H., S. H. Rogstad, and B. A. Schaal. 1990. Genetic variation detected by use of the M13 DNA fingerprint probe in Malus, Prunus and Rubus Rosaceae. Theoretical and Applied Genetics 79: 153-156.
155. Olsen, K. M. 1999. Minisatellite variation in a single-copy nuclear gene: Phylogenetic assessment of repeat length homoplasy and mutational mechanism. Molecular Biology& Evolution 16:1406-1409.
156. Olsen, K. M. and M. D. Purugganan. 2002. Molecular evidence on the origin and evolution of glutinous rice. Genetics 162: 941-950.
157. Ortiz, R. and Z. Huamán. 2001. Allozyme polymorphisms in tetraploid potato gene pools and the effect on human selection. Theoretical and Applied Genetics 103: 792-796.
158. Ozkan, H., A. Brandolini, R. Schafer-Pregl, and F. Salamini. 2002. AFLP analysis of a collection of tetraploid wheats indicates the origin of emmer and hard wheat domestication in southeast Turkey. Molecular Biology and Evolution 19: 1797-1801.
159. Palacios, G., S. Bustamante, C. Molina, P. Winter, and G. Kahl. 2002. Electrophoretic identification of new genomic profiles with a modified selective amplification of microsatellite polymorphic loci technique based on AT/AAT polymorphic repeats. Electrophoresis 23: 3341-3345.
160. Papa, R. and P. Gepts. 2003. Asymmetry of gene flow and differential geographical structure of molecular diversity in wild and domesticated common bean (Phaseolus vulgaris L.) from Mesoamerica. Theoretical and Applied Genetics 106: 239-250.
161. Parsons, B. J., H. J. Newbury, M. T. Jackson, and B. V. FordLloyd. 1997. Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L) using different marker types. Molecular Breeding 3: 115-125.
162. Paterson, A. H. 2002. What has QTL mapping taught us about plant domestication? New Phytologist 154: 591-608.
163. Paterson, A. H., Y. R. Lin, Z. K. Li, K. F. Schertz, J. F. Doebley, S. R. M. Pinson, S. C. Liu, J. W. Stansel, and J. E. Irvine. 1995. Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714-1718.
164. Patzak, J. 2001. Comparison of RAPD, STS, ISSR and AFLP molecular methods used for assessment of genetic diversity in hop (Humulus lupulus L.). Euphytica 121: 9-18.
165. Peakall, R., S. Gilmore, W. Keys, M. Morgante, and A. Rafalski. 1998. Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: Implications for the transferability of SSRs in plants. Molecular Biology and Evolution 15: 1275-1287.
166. Percy, R. G. and J. F. Wendel. 1990. Allozyme evidence for the origin and diversification of Gossypium barbadense L. Theoretical and Applied Genetics 79: 529-542.
167. Pickersgill, B. 1981. Biosystematics of crop-weed complexes. Kulturpflanze 29: 377-388.
168. Pickersgill, B. 1989. Cytological and genetical evidence of the domestication and diffusion of crops within the Americas. In Foraging and farming-The evolution of plant exploitation, D. R. Harris and G. C. Hillman (eds.), pp. 426-439. London: Unwin Hyman.
169. Poncet, V., F. Lamy, K. M. Devos, M. D. Gale, A. Sarr, and T. Robert. 2000. Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae). Theoretical and Applied Genetics 100: 147-159.
170. Poncet, V., E. Martel, S. Allouis, K. M. Devos, F. Lamy, A. Sarr, and T. Robert. 2002. Comparative analysis of QTLs affecting domestication traits between two domesticated × wild pearl millet (Pennisetum glaucum L., Poaceae) crosses. Theoretical and Applied Genetics 104: 965-975.
171. Potter, D. and J. J. Doyle. 1992. Origins of the African yam bean (Sphenostylis stenocarpa, Leguminosae)-Evidence from morphology, isozymes, chloroplast DNA, and linguistics. Economic Botany 46: 276-292.
172. Powell, W., M. Morgante, C. Andre, J. W. McNicol, G. C. Machray, J. J. Doyle, S. V. Tingey, and J. A. Rafalski. 1995. Hypervariable microsatellites provide a general source of polymorphic DNA markers for the chloroplast genome. Current Biology 5: 1023-1029.
173. Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey, and A. Rafalski. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular Breeding 2: 225-238.
174. Provan, J., W. Powell, H. Dewar, G. Bryan, G. C. Machray, and R. Waugh. 1999a. An extreme cytoplasmic bottleneck in the modern European cultivated potato (Solanum tuberosum) is not reflected in decreased levels of nuclear diversity. Proceedings of the Royal Society of London Series B-Biological Sciences 266: 633-639.
175. Provan, J., W. T. B. Thomas, B. P. Forster, and W. Powell. 1999b. Copia-SSR: A simple marker technique which can be used on total genomic DNA. Genome 42: 363-366.
176. Purugganan, M. D., A. L. Boyles, and J. I. Suddith. 2000. Variation and selection at the CAULIFLOWER floral homeotic gene accompanying the evolution of domesticated Brassica oleracea. Genetics 155: 855-862.
177. Rieseberg, L. H. 1996. Homology among RAPD fragments in interspecific comparisons. Molecular Ecology 5: 99-105.
178. Rieseberg, L. H. 2001. Polyploid evolution: Keeping the peace at genomic reunions. Current Biology 11: R925-R928.
179. Rieseberg, L. H. and N. C. Ellstrand. 1993. What can molecular and morphological markers tell us about plant hybridization? Critical Reviews in Plant Sciences 12: 213-241.
180. Rieseberg, L. H. and J. F. Wendel. 1993. Introgression and its consequences in plants. In Hybrid zones and the evolutionary process, R. G. Harrison (ed.), pp. 70-109. New York: Oxford.
181. Rieseberg, L. H., D. E. Soltis, and J. D. Palmer. 1988. A Molecular reexamination of introgression between Helianthus annuus and Helianthus bolanderi (Compositae). Evolution 42: 227-238.
182. Rieseberg, L. H., H. C. Choi, and D. Ham. 1991. Differential cytoplasmic versus nuclear introgression in Helianthus. Journal of Heredity 82: 489-493.
183. Rieseberg, L. H., M. J. Kim, and G. J. Seiler. 1999a. Introgression between the cultivated sunflower and a sympatric wild relative, Helianthus petiolaris (Asteraceae). International Journal of Plant Sciences 160: 102-108.
184. Rieseberg, L. H., J. Whitton, and K. Gardner. 1999b. Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species. Genetics 152: 713-727.
185. Rindos, D. 1989. Darwinism and its role in the explanation of domestication. In Foraging and farming: The evolution of plant exploitation, D. R. Harris and G. C. Hillman (eds.), pp. 27-41. London: Unwin Hyman.
186. Rogstad, S. H., J. C. Patton, II, and B. A. Schaal. 1988. M13 repeat probe detects DNA minisatellite-like sequences in gymnosperms and angiosperms. Proceedings of the National Academy of Sciences, USA 85: 9176-9178.
187. Sanjur, O. I., D. R. Piperno, T. C. Andres, and L. Wessel-Beaver. 2002. Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin. Proceedings of the National Academy of Sciences, USA 99: 535-540.
188. Sefc, K. M., R. B. Payne, and M. D. Sorenson. 2003. Microsatellite amplification from museum feather samples: Effects of fragment size and template concentration on genotyping errors. Auk 120: 982-989.
189. Seiler, G. J. and L. H. Rieseberg. 1997. Systematics, origin, and germplasm resources of the wild and domesticated sunflower. In Sunflower technology and production, Agronomy Monograph no. 35, pp. 21-65. Madison, Wisc.: American Society of Agronomy, Crop Science Society of America, Soil Science Society of America.
190. Selinger, D. A. and V. L. Chandler. 1999. Major recent and independent changes in levels and patterns of expression have occurred at the b gene, a regulatory locus in maize. Proceedings of the National Academy of Sciences, USA 96: 1507-1512.
191. Singh, S. P., R. Nodari, and P. Gepts. 1991. Genetic diversity in cultivated common bean: I. Allozymes. Crop Science 31:19-23.
192. Small, R. L., J. A. Ryburn, and J. F. Wendel. 1999. Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.). Molecular Biology and Evolution 16: 491-501.
193. Smith, B. D. 1997. The initial domestication of Cucurbita pepo in the Americas 10,000 years ago. Science 276: 932-934.
194. Smith, B. D. 1998. The Emergence of Agriculture. New York: Scientific American Library, W. H. Freeman (paperback edition).
195. Smith, B. D. 2002. Rivers of Change - Essays on Early Agriculture in Eastern North America. Washington, D. C.: Smithsonian Institution Press (paperback edition).
196. Smith, B. D. 2005. Low-level food production and the northwest coast. In Keeping it living: Traditions of plant use and cultivation on the northwest coast, D. Deur and N. J. Turner (eds.), pp. 37-66. Vancouver, B.C./Seattle, Wash.: University of British Columbia Press/ University of Washington Press.
197. Smith, B. D. and D. Decker-Walters. 2002. Cucurbita pepo in eastern North America: The early history of a domesticate. Paper presented in the Symposium "Issues Concerning Early North American Agriculture, East and Southwest," Annual Meeting of the Society for American Archaeology, March 20-24, Denver, Colorado.
198. Soltis, P. S. and D. E. Soltis. 2000. The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences, USA 97: 7051-7057.
199. Sonnante, G., T. Stockton, R. O. Nodari, V. L. B. Velasquez, and P. Gepts. 1994. Evolution of genetic diversity during the domestication of common bean (Phaseolus vulgaris L). Theoretical and Applied Genetics 89: 629-635.
200. Spooner, D. M., J. Tivang, J. Nienhuis, J. T. Miller, D. S. Douches, and A. Contreras. 1996. Comparison of four molecular markers in measuring relationships among the wild potato relatives Solanum section Etuberosum (subgenus Potatoe). Theoretical and Applied Genetics 92: 532-540.
201. Stace, C. A. and J. P. Bailey. 1999. The value of genomic in situ hybridization (GISH) in plant taxonomic and evolutionary studies. In Molecular systematics and plant evolution, P. M. Hollingsworth, R. M. Bateman, and R. J. Gornall (eds.), pp. 199-210. London: Taylor& Francis.
202. Stockton, T. and P. Gepts. 1994. Identification of DNA probes that reveal polymorphisms among closely related Phaseolus vulgaris lines. Euphytica 76: 177-183.
203. Sylvester, H. A. 2003. Inter-simple sequence repeat restriction fragment length polymorphisms for DNA fingerprinting. Biotechniques 34: 942-944.
204. Talbert, L. E., L. Y. Smith, and M. K. Blake. 1998. More than one origin of hexaploid wheat is indicated by sequence comparison of low-copy DNA. Genome 41: 402-407.
205. Tang, S. and S. J. Knapp. 2003. Microsatellites uncover extraordinary diversity in native American land races and wild populations of cultivated sunflower. Theoretical and Applied Genetics 106: 990-1003.
206. Tanksley, S. D. 1993. Mapping polygenes. Annual Review of Genetics 27: 205-233.
207. Tanksley, S. D. and S. R. McCouch. 1997. Seed banks and molecular maps: Unlocking genetic potential from the wild. Science 277: 1063-1066.
208. Tautz, D. and C. Schlötterer. 1994. Simple sequences. Current Biology 4: 832-837.
209. Tenaillon, M. I., M. C. Sawkins, A. D. Long, R. L. Gaut, J. F. Doebley, and B. S. Gaut. 2001. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp mays L.). Proceedings of the National Academy of Sciences, USA 98: 9161-9166.
210. Terrell, J. E., J. P. Hart, S. Barut, N. Cellinese, A. Curet, T. Denham, C. M. Kusimba, K. Latinis, R. Oka, J. Palka, M. E. D. Pohl, K. O. Pope, P. R. Williams, H. Haines, and J. E. Staller. 2003. Domesticated landscapes: The subsistence ecology of plant and animal domestication. Journal of Archaeological Method and Theory 10: 323-368.
211. Theissen, G. 2002. Key genes of crop domestication and breeding: Molecular analyses. In Progress in Botany, K. Esser, U. Lüttge, W. Beyschlag, and F. Hellwig (eds.), pp. 189-203. Berlin: Springer.
212. Throne, J. E. and M. W. Eubanks. 2002. Resistance of tripsacorn to Sitophilus zeamais and Oryzaephilus surinamensis. Journal of Stored Products Research 38: 239-245.
213. Tiffin, P. and B. S. Gaut. 2001. Sequence diversity in the tetraploid Zea perennis and the closely related diploid Z. diploperennis: Insights from four nuclear loci. Genetics 158: 401-412.
214. Tohme, J., D. O. Gonzalez, S. Beebe, and M. C. Duque. 1996. AFLP analysis of gene pools of a wild bean core collection. Crop Science 36: 1375-1384.
215. Uptmoor, R., W. Wenzel, W. Friedt, G. Donaldson, K. Ayisi, and F. Ordon. 2003. Comparative analysis on the genetic relatedness of Sorghum bicolor accessions from Southern Africa by RAPDs, AFLPs and SSRs. Theoretical and Applied Genetics 106:1316-1325.
216. Vavilov, N. I. 1992. Origin and geography of cultivated plants. Cambridge, UK: Cambridge University Press [translation by D. Löve of Russian text originally published during 1920-1940].
217. Vigouroux, Y., M. McMullen, C. T. Hittinger, K. Houchins, L. Schulz, S. Kresovich, Y. Matsuoka, and J. Doebley. 2002. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proceedings of the National Academy of Sciences, USA 99: 9650-9655.
218. Virk, P. S., J. Zhu, H. J. Newbury, G. J. Bryan, M. T. Jackson, and B. V. Ford-Lloyd. 2000. Effectiveness of different classes of molecular marker for classifying and revealing variation in rice (Oryza sativa) germplasm. Euphytica 112: 275-284.
219. Von Buren, M. 2001. Polymorphisms in two homeologous g-gliadin genes and the evolution of cultivated wheat. Genetic Resources and Crop Evolution 48. 205-220.
220. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
221. Wang, R. L., A. Stec, J. Hey, L. Lukens, and J. Doebley. 1999. The limits of selection during maize domestication. Nature 398: 236-239.
222. Wang, R. L., A. Stec, J. Hey, L. Lukens, and J. Doebley. 2001. Correction: The limits of selection during maize domestication (vol. 398, p. 236, 1999). Nature 410: 718.
223. Warburton, M. L., B. Skovmand, and A. Mujeeb-Kazi. 2002. The molecular genetic characterization of the "Bobwhite" bread wheat family using AFLPs and the effect of the T1BL.1RS translocation. Theoretical and Applied Genetics 104: 868-873.
224. Weeden, N. F., S. Brauner, and J. A. Przyborowski. 2002. Genetic analysis of pod dehiscence in pea (Pisum sativum L.). Cellular& Molecular Biology Letters 7: 657-663.
225. Wendel, J. F. 2000. Genome evolution in polyploids. Plant Molecular Biology 42: 225-249.
226. Wendel, J. F. and V. A. Albert. 1992. Phylogenetics of the cotton genus (Gossypium): Character-state weighted parsimony analysis of chloroplast DNA restriction site data and its systematic and biogeographic implications. Systematic Botany 17: 115-143.
227. Wendel, J. F., P. D. Olson, and J. M. Stewart. 1989. Genetic diversity, introgression, and independent domestication of old world cultivated cottons. American Journal of Botany 76: 1795-1806.
228. Whitaker, T. W. and G. F. Carter. 1946. Critical notes on the origin and domestication of the cultivated species of Cucurbita. American Journal of Botany 33: 10-15.
229. White, S. E. and J. F. Doebley. 1999. The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. Genetics 153: 1455-1462.
230. Whitt, S. R., L. M. Wilson, M. I. Tenaillon, B. S. Gaut, and E. S. Buckler IV. 2002. Genetic diversity and selection in the maize starch pathway. Proceedings of the National Academy of Sciences, USA 99: 12959-12962.
231. Whitton, J., D. E. Wolf, D. M. Arias, A. A. Snow, and L. H. Rieseberg. 1997. The persistence of cultivar alleles in wild populations of sunflowers five generations after hybridization. Theoretical and Applied Genetics 95: 33-40.
232. Wilson, H. D., J. Doebley, and M. Duvall. 1992. Chloroplast DNA diversity among wild and cultivated members of Cucurbita (Cucurbitaceae). Theoretical and Applied Genetics 84: 859-865.
233. Wilson, W. A., S. E. Harrington, W. L. Woodman, M. Lee, M. E. Sorrells, and S. R. McCouch. 1999. Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids. Genetics 153: 453-473.
234. Witsenboer, H., J. Vogel, and R. W. Michelmore. 1997. Identification, genetic localization, and allelic diversity of selectively amplified microsatellite polymorphic loci in lettuce and wild relatives (Lactuca spp.). Genome 40: 923-936.
235. Wolfe, A. D. and A. Liston. 1998. Contributions of PCR-based methods to plant systematics and evolutionary biology. In Molecular Systematics of Plants II, D. E. Soltis, P. S. Soltis, and J. J. Doyle (eds.), pp. 43-86. Norwell, Mass.: Kluwer Academic Publishers.
236. Wolfe, K. H., W.-H. Li, and P. M. Sharp. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proceedings of the National Academy of Sciences, USA 84: 9054-9058.
237. Xiong, L. X., K. D. Liu, X. K. Dai, C. G. Xu, and Q. F. Zhang. 1999. Identification of genetic factors controlling domesticationrelated traits of rice using an F-2 population of a cross between Oryza sativa and O. rufipogon. Theoretical and Applied Genetics 98: 243-251.
238. Xu, R. Q., N. Tomooka, D. A. Vaughan, and K. Doi. 2000. The Vigna angularis complex: Genetic variation and relationships revealed by RAPD analysis, and their implications for in situ conservation and domestication. Genetic Resources and Crop Evolution 47: 123-134.
239. Yen, D. E. 1989. The domestication of environment. In Foraging and farming-The evolution of plant exploitation, D. R. Harris and G. C. Hillman (eds.), pp. 55-75. London: Unwin Hyman.
240. Zhang, D. X. and G. M. Hewitt. 2003. Nuclear DNA analyses in genetic studies of populations: Practice, problems and prospects. Molecular Ecology 12: 563-584.
241. Zhang, L., A. S. Peek, D. Dunams, and B. S. Gaut. 2002. Population genetics of duplicated disease defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis). Genetics 162: 851-860.
242. Zhang, P., B. Friebe, and B. S. Gill. 2002. Variation in the distribution of a genome-specific DNA sequence on chromosomes reveals evolutionary relationships in the Triticum and Aegilops complex. Plant Systematics and Evolution 235: 169-179.
243. Zietkiewicz, E., A. Rafalski, and D. Labuda. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain-reaction amplification. Genomics 20: 176-183.
244. Zohary, D. 1984. Modes of evolution of plants under domestication. In Plant biosystematics, W. F. Grant (ed.), pp. 579-586. Toronto: Academic Press.
245. Zohary, D. 1996. The mode of domestication of the founder crops of southwest Asian agriculture. In The origins and spread of agriculture and pastoralism in Eurasia, D. R. Harris (ed.), pp. 142-158. London: University College London Press.
246. Zohary, D. 1999. Monophyletic vs. polyphyletic origin of the crops on which agriculture was founded in the Near East. Genetic Resources and Crop Evolution 46: 133-142.
247. Zohary, D. and M. Hopf. 1994. Domestication of plants in the old world, Oxford Science Publications. Oxford: Oxford University Press.