How ancient DNA may help in understanding the origin and spread of agriculture

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 354, Issue 1379, 1999, Pages 89-98

  Brown, Terence A ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Agriculture; Ancient DNA; Archaeobotany; Archaeology; Molecular phylogenetics; Plant domestication

Indexed keywords

AGRICULTURAL HISTORY; ARCHAEOLOGICAL EVIDENCE; DNA; HISTORICAL GEOGRAPHY;

EID: 0033613661     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.1999.0362     Document Type: Article

References (72)

1. Allaby, R. G. & Brown, T. A. 1999 Use of multigene PCR to assess DNA fragmentation. (In preparation.)
2. Allaby, R. G., Jones, M. K. & Brown, T. A. 1994 DNA in charred wheat grains from the Iron Age billfort at Danebury, England. Antiquity 68, 126-132.
3. Allaby, R. G., O'Donoghue, K., Sallares, R., Jones, M. K. & Brown, T. A. 1997 Evidence for the survival of ancient DNA in charred wheat seeds from European archaeological sites. Ancient Biomolec. 1, 119-129.
4. Allaby, R. G., Banerjee, M. & Brown, T. A. 1998 Evolution of the high-molecular-weight glutenin loci of the A, B, D and G genomes of wheat. Genome. (In the press.)
5. Anderson, O. D. & Greene, F. C. 1989 The characterization and comparative analysis of high-molecular-weight glutenin genes from genomes A and B of a hexaploid bread wheat. Theor. Appl. Genet. 77, 689-700.
6. Bailey, J. F., Richards, M. B., Macaulay, V. A., Colson, I. B., James, I. T., Bradley, D. G., Hedges, R. E. M. & Sykes, B. C. 1996 Ancient DNA suggests a recent expansion of European cattle from a diverse wild progenitor species. Proc. R. Soc. Lond. B 263, 1467-1473.
7. Barker, G. 1985 Prehistoric farming in Europe. Cambridge University Press.
8. Bell, G. D. H. 1987 The history of wheat cultivation. In Wheat breeding - its scientific basis (ed. F. G. H. Lupton), pp. 31-49. London: Chapman & Hall.
9. Bellwood, P. 1996 The origins and spread of agriculture in the Indo-Pacific region: gradualism and diffusion or revolution and colonization? In The origins and spread of agriculture and pastoralism in Eurasia (ed. D. R. Harris), pp. 465-498. London: UCL Press.
10. Binford, L. R. 1968 Post-Pleistocene adaptations. In New perspectives in archaeology (ed. S. R. Binford & L. R. Binford), pp. 313-341. Chicago, IL: Aldine.
11. Boardman, S. & Jones, G. 1990 Experiments on the effects of charring on cereal plant components. J. Archaeol. Sci. 17, 1-11.
12. Brown, T. A., Allaby, R. G., Brown, K. A. & Jones, M. K. 1993 Biomolecular archaeology of wheat: past, present and future. World Archaeol. 25, 64-73.
13. Brown, T. A., Allaby, R. G., Sallares, R. & Jones, G. 1998 Ancient DNA in charred wheats: taxonomic identification of mixed and single grains. Ancient Biomolec. (In the press.)
14. Cavalli-Sforza, L. L. 1996 The spread of agriculture and nomadic pastoralism: insights from genetics, linguistics and archaeology. In The origins and spread of agriculture and pastoralism in Eurasia (ed. D. R. Harris), pp. 51-69. London: UCL Press.
15. Childe, V. G. 1928 The most ancient East: the oriental prelude to European prehistory. London: Kegan Paul, Trench, Trubner.
16. Clegg, M. T., Brown, A. H. D. & Whitfield, P. R. 1984 Chloroplast DNA diversity in wild and cultivated barley: implications for genetic conservation. Genet. Res. 43, 339-343.
17. Darwin, C. 1868 The variation of animals and plants under domestication, vol 1. London: John Murray.
18. Deakin, W. J., Rowley-Conwy, P. & Shaw, C. H. 1998 Amplification and sequencing of DNA from preserved sorghum of up to 2800 years antiquity found at Qasr Ibrim. Ancient Biomolec. 1, 27-41.
19. de Candolle, A. 1882 Origine des plantes cultivés. Paris: Germer Baillière.
20. Doebley, J. 1990 Molecular evidence and the evolution of maize. Econ. Bot. 44 (suppl.), 6-28.
21. Dong, H., Cox, T. S., Sears, R. G. & Lookhart, G. L. 1991 High molecular weight glutenin genes: effects on quality in wheat. Crop Sci. 31, 974-979.
22. Flannery, K. 1969 Origins and ecological effects of early domestication in Iran and the Near East. In The domestication and exploitation of plants and animals (ed. P. J. Ucko & G. W. Dimbleby), pp. 73-100. London: Duckworth.
23. Golenberg, E. M., Bickel, A. & Weihs, P. 1996 Effect of highly fragmented DNA on PCR. Nucl. Acids Res. 24, 5026-5033.
24. Goloubinoff, P., Pääbo, S. & Wilson, A. C. 1993 Evolution of maize inferred from sequence diversity of an adh2 gene segment from archaeological specimens. Proc. Natn. Acad. Sci. USA 90, 1997-2001.
25. Grellet, F., Delcasso, D., Panabieres, F. & Delseny, M. 1986 Organization and evolution of a higher plant alphoid-like satellite DNA sequence. J. Molec. Biol. 187, 495-507.
26. Hagelberg, E., Sykes, B. & Hedges, R. E. M. 1989 Ancient bone DNA amplified. Nature 342, 485.
27. Harberd, N. P., Bartels, D. & Thompson, R. D. 1986 DNA restriction-fragment variation in the gene family encoding high molecular weight (HMW) glutenin subunits of wheat. Biochem. Genet. 24, 579-596.
28. Harlan, J. R. 1971 Agricultural origins: centers and noncenters. Science 174, 468-474.
29. Harris, D. R. 1996 Introduction: themes and concepts in the study of early agriculture. In The origins and spread of agriculture and pastoralism in Eurasia (ed. D. R. Harris), pp. 1-9. London: UCL Press.
30. Hawkes, J. G. 1983 The diversity of crop plants. Cambridge, MA: Harvard University Press.
31. Heun, M., Schäfer-Pregl, R., Klawan, D., Castagna, R., Accerbi, M., Borghi, B. & Salamini, F. 1997 Site of einkorn wheat domestication identified by DNA fingerprinting. Science 278, 1312-1314.
32. Hodder, I. 1990 The domestication of Europe. Oxford: Basil Blackwell.
33. Jones, M. K. & Brown, T. A. 1998 Agricultural origins: the evidence of modern and ancient DNA. Holocene. (In the press.)
34. Jones, M. K., Allaby, R. G. & Brown, T. A. 1998 Wheat domestication. Science 279, 302-303.
35. Kislev, M. E. 1992 Agriculture in the Near East in VIIth millennium BC. In Préhistoire de l'agriculture: nouvelles approches expérimentales et ethnographiques (Monographie 6, Centre de Recherches Archéologiques) (ed. P. C. Anderson), pp. 87-93. Paris: Editions du CNRS.
36. Krings, M., Stone, A., Schmitz, R. W., Krainitzi, H., Stoneking, M. & Pääbo, S. 1997 Neandertal DNA sequences and the origin of modern humans. Cell 90, 19-30.
37. Lagudah, E. S., Appels, R., McNeil, D. & Schachtman, D. P. 1993 Exploiting the diploid D genome chromatin for wheat improvement. In Gene conservation and exploitation, 20th Stadler genetics symposium (ed. J. P. Gustafson, R. Appels & P. Raven), pp. 87-107. New York: Plenum Press.
38. Lindahl, T. 1993a Instability and decay of the primary structure of DNA. Nature 362, 709-715.
39. Lindahl, T. 1993b Recovery of antediluvian DNA. Nature 365, 700.
40. Lister, A. M., Kadwell, M., Kaagan, L. M., Jordan, W. C., Richards, M. B. & Stanley, H. F. 1998 Ancient and modern DNA in a study of horse domestication. Ancient Biomolec. (In the press.)
41. Miller, T. E. 1987 Systematics and evolution. In Wheat breeding-its scientific basis (ed. F. G. H. Lupton), pp. 1-30. London: Chapman & Hall.
42. Neele, D. B., Saghai-Marrof, M. A., Allard, R. W., Zhang, Q. & Jorgensen, R. A. 1988 Chloroplast DNA diversity in populations of wild and cultivated barley. Genetics 120, 1105-1110.
43. Nesbitt, M. & Samuel, D. 1998 Wheat domestication: archaeo-botanical evidence. Science 279, 1433.
44. Nishikawa, N. 1983 Species relationship of wheat and its putative ancestors as viewed from isozyme variation. Proc. 6th Int. Wheat Genetics Symp., Kyoto, Japan, pp. 53-63.
45. O'Donoghue, K., Brown, T. A., Carter, J. F. & Evershed, R. P. 1994 Detection of nucleotide bases in ancient seeds using gas chromatography/mass spectrometry and gas chromatography/mass spectrometry/mass spectrometry. Rapid Comm. Mass Spectrom. 8, 503-508.
46. O'Donoghue, K., Brown, T. A., Carter, J. F. & Evershed, R. P. 1996a Application of high performance liquid chromatography mass spectrometry with electrospray ionisation to the detection of DNA nucleosides in ancient seeds. Rapid Comm. Mass Spectrom. 10, 495-500.
47. O'Donoghue, K., Clapham, A., Evershed, R. P. & Brown, T. A. 1996b Remarkable preservation of biomolecules in ancient radish seeds. Proc. R. Soc. Lond. B 263, 541-547.
48. Payne, P. I., Holt, L. M., Worland, A. J. & Law, C. N. 1982 Structural and genetic studies on the high-molecular-weight subunits of wheat glutenin. 3. Telocentric mapping of the subunit genes on the long arms of the homeologous group I chromosomes. Theor. Appl. Genet. 63, 129-138.
49. Payne, P. I. & Lawrence, G. J. 1983 Catalogue of alleles for the complex gene loci, Glu-A1, Glu-B1 and Glu-D1 which code for high molecular weight subunits of glutenin in hexaploid wheat. Cereal Res. Commun. 11, 29-35.
50. Pluciennik, M. 1996 Genetics, archaeology and the wider world. Antiquity 70, 13-14.
51. Poinar, H. N., Höss, M. M., Bada, J. L. & Pääbo, S. 1996 Amino acid racemization and the preservation of DNA in the archaeological and palacontological record. Science 272, 864-866.
52. Reddy, P. & Appels, R. 1993 Analysis of a genomic DNA segment carrying the wheat high-molecular-weight (HMW) glutenin Bx17 subunit and its use as an RFLP marker. Theor. Appl. Genet. 85, 616-624.
53. Renfrew, C. 1987 Archaeology and language, the puzzle of Indo-European origins. London: Jonathan Cape.
54. Richards, M., Côrte-Real, H., Forster, P., Macaulay, V., Wilkinson-Herbots, H., Demaine, A., Papiha, S., Hedges, R., Bandelt, H.-J. & Sykes, B. 1996 Paleolithic and Neolithic lineages in the European mitochondrial gene pool. Am. J. Hum. Genet. 59, 185-203.
55. Rollo, F., LaMarca, A. & Amici, A. 1987 Nucleic acids in mummified plant seeds: screening of twelve specimens by gel electrophoresis, molecular hybridization and DNA cloning. Theor. Appl. Genet. 73, 501-505.
56. Rollo, F., Venanzi, F. M. & Amici, A. 1991 Nucleic acids in mummified plant seeds: biochemistry and molecular genetics of pre-Columbian maize. Genet. Res. 58, 193-201.
57. Rollo, F., Asci, W. & Sassaroli, S. 1994 Assessing the genetic variation in pre-Columbian maize at the molecular level. In Conservation of plant genes II: utilization of ancient and modern DNA (ed. R. P. Adams, J. S. Miller, E. M. Golenberg & J. E. Adams), pp. 27-35. St Louis: Missouri Botanical Garden.
58. Sallares, R. 1991 The ecology of the Ancient Greek World. London: Duckworth.
59. Sallares, R., Allaby, R. G. & Brown, T. A. 1995 PCR-based identification of wheat genomes. Molec. Ecol. 4, 509-514.
60. Schlumbaum, A., Neuhaus, J.-M. & Jacomet, S. 1998 Coexistence of tetraploid and hexaploid naked wheats in a neolithic lake dwelling of Central Europe. Evidence from morphology and ancient DNA. J. Archaeol. Sci. (In the press.)
61. Sherratt, A. 1997 Climatic cycles and behavioural revolutions: the emergence of modern humans and the beginning of farming. Antiquity 71, 271-287.
62. Thompson, R. D., Bartels, D., Harberd, N. P. & Flavell, R. B. 1983 Characterisation of the multigene family coding for HMW glutenin subunits in wheat using cDNA clones. Theor. Appl. Genet. 67, 87-96.
63. Threadgold, J. & Brown, T. A. 1999 Decay of DNA in artificially charred wheat seeds. J. Archaeol. Sci. (In preparation.)
64. Turner, C. L., Grant, A., Bailey, J. F., Dover, G. A. & Barker, G. W. W. 1998 Patterns of genetic diversity in extant and extinct cattle populations: evidence from sequence analysis of mitochondrial coding regions. Ancient Biomolec. (In the press.)
65. van Zeist, W., Wasylikowa, K. & Behre, K.-H. (eds) 1991 Progress in Old World palaeoethnobotany. Rotterdam: Balkema.
66. Vavilov, N. I. 1926 Studies on the origin of cultivated plants. Leningrad: Institut Botanique Appliqué et d'Amélioration des Plantes.
67. Waite, E., Child, A. M., Craig, O. E., Collins, M. J., Brown, T. A. & Gelsthorp, K. 1997 A preliminary investigation of DNA stability in bone during artificial diagenesis. Bull. Soc. Géol. Fr. 168, 547-554.
68. Wolfe, K., Sharp, P. M. & Li, W.-H. 1989 Rates of synonymous substitution in plant nuclear genes. J. Molec. Evol. 29, 208-211.
69. Zhukovsky, P. M. 1975 World gene pool of plants for breeding. Mega-genecenters and endemic micro-genecenters. Leningrad: N. I. Vavilov Institute of Plant Industry.
70. Zohary, D. 1970 Centers of diversity and centers of origin. In Genetic resources in plants - their exploration and conservation (ed. D. H. Frankel & E. Bennett), pp. 33-42. Oxford: Blackwell Scientific.
71. Zohary, D. 1996 The mode of domestication of the founder crops of Southwest Asian agriculture. In The origins and spread of agriculture and pastoralism in Eurasia (ed. D. R. Harris), pp. 142-158. London: UCL Press.
72. Zohary, D. & Hopf, M. 1993 Domestication of plants in the Old World, 2nd edn. Oxford Scientific Publications.