Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis)

Genetics

Volumn 162, Issue 2, 2002, Pages 851-860

  Zhang, Liqing ^a   Peek, Andrew S ^a,b   Dunams, Detiger ^a   Gaut, Brandon S ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b INTEGRATED DNA TECHNOLOGIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ARTIFICIAL SELECTION; COCHLIOBOLUS CARBONUM; CONTROLLED STUDY; DNA POLYMORPHISM; DNA SEQUENCE; DOMESTICATION; GENE LOCUS; GENETIC RESISTANCE; GENETIC VARIABILITY; HM1 GENE; HM2 GENE; MAIZE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; PLANT PATHOGEN INTERACTION; POPULATION GENETICS; PRIORITY JOURNAL; ASCOMYCETES; ENZYMOLOGY; GENETIC SELECTION; GENETICS; MICROBIOLOGY; PATHOGENICITY;

COCHLIOBOLUS CARBONUM; EMBRYOPHYTA; ZEA MAYS;

HC TOXIN REDUCTASE, ZEA MAYS; OXIDOREDUCTASE; VEGETABLE PROTEIN;

ASCOMYCOTA; EVOLUTION, MOLECULAR; OXIDOREDUCTASES; PLANT PROTEINS; SELECTION (GENETICS); SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS); ZEA MAYS;

EID: 0036811122     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (42)

1. Bishop, J. G., A. M. Dean and T. Mitchell-Olds, 2000 Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution. Proc. Natl. Acad. Sci. USA 97: 5322-5327.
2. Braverman, J. M., R. R. Hudson, N. L. Kaplan, C. H. Langley and W. Stephan, 1995 The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140: 783-796.
3. Buckler, E. S., J. M. Thornesberry and S. Kresovich, 2001 Molecular diversity, structure and domestication of grasses. Genet. Res. 77: 313-318.
4. Caicedo, A. L., B. A. Schaal and B. N. Kunkel, 1999 Diversity, and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96: 302-306.
5. Depaulis, F., S. Mousset and M. Veuille, 2001 Haplotype tests using coalescent simulations conditional on the number of segregating sites. Mol. Biol. Evol. 18: 1136-1138.
6. Doebley, J., 1990 Molecular evidence and the evolution of maize. Econ. Bot. 44: 6-27.
7. Eyre-Walker, A., R. L. Gaut, H. Hilton, D. L. Feldman and B. S. Gaut, 1998 Investigation of the bottleneck leading to the domestication of maize. Proc. Natl. Acad. Sci. USA 95: 4441-4446.
8. Fay, J. C., and C.-I. Wu, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
9. Fu, Y.-X., and W.-H. Li, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
10. Goloubinoff, P., S. Paabo and A. C. Wilson, 1993 Evolution of maize inferred from sequence diversity of an Adh2 gene segment from archaelogical specimens. Proc. Natl. Acad. Sci. USA 90: 1997-2001.
11. Hanson, M. A., B. S. Gaut, A. O. Stec, S. I. Fuerstenberg, M. M. Goodman et al., 1996 Evolution of anthocyanin biosynthesis in maize kernels: The role of regulatory and enzymatic loci. Genetics 143: 1395-1407.
12. Henry, M., and C. Damerral, 1997 High rates of polymorphism and recombination at the Opaque-2 locus in cultivated maize. Mol. Gen. Genet. 256: 147-157.
13. Hilton, H., and B. S. Gaut, 1998 Speciation and domestication in maize and its wild relatives: Evidence from the Globulin-1 gene. Genetics 150: 863-872.
14. Hudson, R. R., M. Kreitman and M. Aguade, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
15. Hudson, R. R., K. Bailey, D. Skarecky, J. Kwiatowski and F. J. Ayala, 1994 Evidence for positive selection in the superoxide dismutase (Sod) regions of Drosophila melanogaster. Genetics 136: 1329-1340.
16. Iltis, H. H., 1983 From teosinte to maize: The catastrophic sexual transmutation. Science 222: 886-894.
17. Johal, G. S., and S. P. Briggs, 1992 Reductase activity encoded by the HM1 disease resistance gene in maize. Science 258: 985-987.
18. Mason-Gamer, R. J., C. F. Weil and E. A. Kellogg, 1998 Granulebound starch synthase: Structure, function and phylogenetic utility. Mol. Biol. Evol. 15: 1658-1673.
19. Matsuoka, Y., S. E. Mitchell, S. Kresovich, M. Goodman and J. Doebley, 2001 Microsatellites in Zea - Variability, patterns of mutations, and use for evolutionary studies. Theor. Appl. Genet. 104: 436-450.
20. McDonald, J. H., 1998 Improved tests for heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence. Mol. Biol. Evol. 15: 377-384.
21. McDonald, J. H., and M. Kreitman, 1991 Adaptive protein evolution at the Adh1 locus in Drosophila. Nature 351: 652-654.
22. Meyers, B. C., K. A. Shen, P. Rohani, B. S. Gaut and R. W. Michelmore, 1998 Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 10: 1833-1846.
23. Meyers, B. C., A. W. Dickerman, R. W. Michelmore, S. Sivaramakrishnan, B. W. Sobral et al., 1999 Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 20: 317-332.
24. Michelmore, R. W., and B. C. Meyers, 1998 Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res. 8: 1113-1130.
25. Multani, D. S., G. S. Johal, J. Gray, R. B. Meeley and S. P. Briggs, 1998 Plant-pathogen micro-evolution: Molecular basis for the recent origin of a disease in maize. Proc. Natl. Acad. Sci. USA 95: 1686-1691.
26. Nelson, O. E., and A. J. Ullstrup, 1964 Resistance to leaf spot in maize. J. Hered. 55: 195-199.
27. Parniske, M., K. E. Hammond-Kosack, C. Golstein, C. M. Thomas, D. A. Jones et al., 1997 Novel disease resistance specificities result from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91: 821-832.
28. Przeworski, M., R. R. Hudson and A. Di Rienzo, 2000 Adjusting the focus on human variation. Trends Genet. 16: 296-302.
29. Rozas, J., and R. Rozas, 1999 DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
30. Rozas, J., M. Gullaud, G. Blandin and M. Aguade, 2001 DNA variation at the rp49gene region of Drosophila simulans: Evolutionary inferences from an unusual haplotype structure. Genetics 158: 1147-1155.
31. Ryan, C. A., 1990 Protease inhibitors in plants: Genes for improving defenses against insects and pathogens. Annu. Rev. Phytopathol. 28: 425-449.
32. Simonsen, K. L., G. A. Churchill and C. F. Aquadro, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
33. Stahl, E. A., G. Dwyer, R. Mauricio, M. Kreitman and J. Bergelson, 1999 Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature 400: 667-671.
34. Tajima, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
35. Tajima, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
36. Tenaillon, M., M. C. Sawkins, A. D. Long, R. L. Gaut, J. F. Doebley et al., 2001 Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. USA 98: 9161-9166.
37. Tiffin, P., and B. S. Gaut, 2001 Molecular evolution of the wound induced serine protease inhibitor wip1 in Zea and related genera. Mol. Biol. Evol. 18: 2091-2101.
38. Wang, G.-L., D.-L. Ruan, W.-Y. Song, S. Sideris, L. Chen et al., 1998 Xa21D encodes a receptor-like molecule with a leucine rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell 10: 765-779.
39. Wang, R. L., A. Stec, J. Hey, L. Lukens and J. Doebley, 1999 The limits of selection during maize domestication. Nature 398: 236-239.
40. Wang, R.-L., A. Stec, J. Hey, L. Lukens and J. Doebley, 2001 Correction: The limits of selection during maize domestication. Nature 410: 718.
41. Watterson, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 188-193.
42. White, S. E., and J. F. Doebley, 1999 The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. Genetics 153: 1455-1462.