Microsatellites uncover extraordinary diversity in native American land races and wild populations of cultivated sunflower

Theoretical and Applied Genetics

Volumn 106, Issue 6, 2003, Pages 990-1003

  Tang, Shunxue ^a   Knapp, Steven J ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

Crop domestication; Helianthus; Hopi; Native American land races; Simple sequence repeats

Indexed keywords

BIODIVERSITY; GENES; PLANTS (BOTANY);

ALLELES; GENE POOL;

GENETIC ENGINEERING;

EMBRYOPHYTA; HELIANTHUS; HELIANTHUS ANNUUS;

EID: 0037518201     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-1127-6     Document Type: Article

References (65)

1. Arias DM, Rieseberg LH (1994) Gene flow between cultivated and wild sunflowers. Theor Appl Genet 89:655-660
2. Arias DM, Rieseberg LH (1995) Genetic relationships among domesticated and wild sunflowers (Helianthus annuus L. Asteraceae). Econ Bot 49:239-248
3. Berry ST, Allen RJ, Barnes SR, Caligari PDS (1994) Molecular marker analysis of Helianthus annuus L. 1. Restriction fragment length polymorphism between inbred lines of cultivated sunflower. Theor Appl Genet 89:435-441
4. Berry ST, Leon AJ, Hanfrey CC, Challis P, Burkholz A, Barnes S, Rufener GK, Lee M, Caligari PDS (1995) Molecular marker analysis of Helianthus annuus L. 2. Construction of an RFLP linkage map for cultivated sunflower. Theor Appl Genet 91:195-199
5. Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL (1994) High resolution of human evolutionary trees with polymorhic microsatellites. Nature 368:455-457
6. Burke J, Tang S, Knapp SJ, Rieseberg LH (2002) Genetic analysis of sunflower domestication. Genetics 161:1257-1267
7. Capelli C, Wilson JF, Richards M, Stumpf MPH, Gratix F, Oppenheimer S, Underhill P, Pascali VL, Ko TM, Goldstein DB (2001) A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania. Am J Hum Genet 68:432-443
8. Chakraborty R, Kimmel M, Stivers DN, Davison LJ, Deka R (1997) Relative mutation rates at di-, tri-, and tetra-nucleotide microsatellite loci. Proc Natl Acad Sci USA 94:1041-1046
9. Cheres MT, Knapp SJ (1998) Ancestral origins and genetic diversity of cultivated sunflower: coancestry analysis of public germplasm. Crop Sci 38:1476-1482
10. Crites GD (1993) Domesticated sunflower in fifth millenium B.P. termporal context: new evidence from Middle Tennessee. Am Antiquity 58:146-158
11. Cronn R, Brothers M, Klier K, Bretting PK, Wendel JF (1997) Allozyme variation in domesticated annul sunflower and its wild relatives. Theor Appl Genet 95:532-545
12. Gentzbittel L, Perrault A, Nicolas P (1992) Molecular phylogeny of the Helianthus genus, based on nuclear restriction-fragment-length polymorphism (RFLP). Mol Biol Evol 9:872-892
13. Gentzbittel L, Zhang YX, Vear F, Griveau B, Nicolas P (1994) RFLP studies of genetic relationships among inbred lines of the cultivated sunflower, Helianthus annuus L.: evidence for distinct restorer and maintainer germplasm pools. Theor Appl Genet 89:419-425
14. Gentzbittel L, Vear F, Zhang YX, Berville A (1995) Development of a consensus linkage RFLP map of cultivated sunflower (Helianthus annuus L.). Theor Appl Genet 90:1079-1086
15. Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995a) An evaluation of genetic distances for use with microsatellite loci. Genetics 139:463-471
16. Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995b) Genetic absolute dating based on microsatellites and the origin of modern humans. Proc Natl Acad Sci USA 92:6723-6727
17. Heiser CB (1945) The Hopi sunflower. Miss Bot Garden Bull 3:163-166
18. Heiser CB (1946) A "new" cultivated sunflower from Mexico. Madrono 8:226-229
19. Heiser CB (1951) The sunflower among the North American Indians. Proc Am Phil Soc 95:432-448
20. Heiser CB (1955) Origin and development of the cultivated sunflower. Am Biol Teach 17:161-167
21. Heiser CB (1976) The sunflower. University Oklahoma Press, Norman
22. Heiser CB (1985) Some botanical considerations of the early domesticated plants north of Mexico. In: Ford RI (ed) Prehistoric food production in North America. University Michigan Museum Anthropology, Ann Arbor, pp 57-82
23. Heiser CB (2001) Letter to the editor. Econ Bot 55:470-471
24. Hongtrakul V, Huestis GM, Knapp SJ (1997) Amplified fragment length polymorphisms as a tool for DNA fingerprinting sunflower germplasms: genetic diversity among oilseed inbred lines. Theor Appl Genet 95:400-407
25. Jan CC, Vick BA, Miller JF, Kahler AL, Butler ET (1998) Construction of an RFLP linkage map for cultivated sunflower. Theor Appl Genet 96:15-22
26. Kinman ML (1970) New developments in the USDA and state experiment station breeding programs. In: Proc 4th Int Sunflower Conf, Int Sunflower Assoc, Paris, pp 181-183
27. Knapp SJ, Berry ST, Rieseberg LH (2001) Genetic mapping in sunflower. In: Philips RL, Vasil IK (eds) DNA markers in plants. Kluwer, Dordrecht, The Netherlands, pp 379-403
28. Korell M, Mosges G, Friedt W (1992) Construction of a sunflower pedigree map. Helia 15:7-12
29. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
30. Lawson WR, Henry RJ, Kochman JK, Kong GA (1994) Genetic diversity in sunflower (Helianthus annuus L.) as revealed by random amplified polymorphic DNA analysis. Aust J Agric Res 45:1319-1327
31. Leclercq P (1969) Une Sterilite male cytoplasmique chez le tournesol. Ann Amélior Plant 19:99-106
32. Lentz DL, Pohl MED, Pope KO, Wyatt AR (2001a) Prehistoric sunflower (Helianthus annuus L.) domestication in Mexico. Econ Bot 55:370-376
33. Lentz DL, Pohl MED, Pope KO, Wyatt AR (2001b) Letter to the editor. Econ Bot 55:471-472
34. Linder CR, Taha I, Seiler GJ, Snow AA, Rieseberg LH (1996) Long-term introgression of crop genes into wild sunflower populations. Theor Appl Genet 96:339-347
35. Margush T, McMorris FR (1981) Consensus n-trees. Bull Math Biol 43:239-244
36. Matsuoka Y, Mitchell SE, Kresovich S, Goodman MM, Doebley J (2002a) Microsatellites in Zea - variability, patterns of mutations, and use for evolutionary studies. Theor Appl Genet 104:436-450
37. Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez GJ, Buckler E, Doebley J (2002b) A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci USA 99:6080-6084
38. Nabhan G (1982) Sunflower of Indians of the southwest. Sunflower 8:30-32
39. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
40. Ohta T, Kimura K (1973) The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population. Genet Res 22:201-204
41. Ott J (1991) Analysis of human genetic linkage. John Hopkins University Press, Baltimore
42. Paniego N, Echaide M, Munoz M, Fernandez L, Torales S, Faccio P, Fuxan I, Carrera M, Zandomeni R, Suarez EY, Hopp HE (2002) Microsatellite isolation and characterization in sunflower (Helianthus annuus L.). Genome 45:34-43
43. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparision of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2:225-238
44. Pustovoit VS (1964) Conclusions of work on the selection and seed production of sunflowers (in Russian). Agrobiology 5:662-697
45. Putt ER (1997) Early history of sunflower. In: Schneiter AA (ed) Sunflower technology and production. Crop Sci Soc Am, Madison, Wisconsin, pp 1-19
46. Quillet MC, Vear F, Branlard G (1992) The use of isozyme polymorphism for identification of (Helianthus annuus L.) inbred lines. J Genet Breed 91:1195-1202
47. Rieseberg LH (1998) Genetic mapping as a tool for studying speciation. In: Soltis DE, Soltis PS, Doyle JJ (eds) Molecular systematics of plants. Chapman and Hall, New York, pp 459-487
48. Rieseberg LH, Seiler GJ (1990) Molecular evidence and the origin and development of the domesticated sunflower (Helianthus annuus, Asteraceae.). Econ Bot 44:79-91
49. Rieseberg LH, Choi H, Chan R, Spore C (1993) Genomic map of a diploid hybrid species. Heredity 70:285-293
50. Rogers CE, Thompson TE, Seiler GJ (1982) Sunflower species of the United States. National Sunflower Association, Bismark, North Dakota
51. Rzhetsky A, Nei M (1992a) A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9:945-967
52. Rzhetsky A, Nei M (1992b) Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference. J Mol Evol 35:367-375
53. Schlötterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211-215
54. Shriver MD, Jin L, Chakraborty R, Boerwinkle E (1993) VNTR allele frequency distributions under the stepwise mutation model: a computer simulation approach. Genetics 134:983-993
55. Seiler GJ, Rieseberg LH (1997) Systematics, origin, and germplasm resources of the wild and domesticated sunflower. In: Schneiter AA (ed) Sunflower technology and production. Crop Sci Soc Am, Madison, Wisconsin, pp 21-65
56. Semelczi-Kovacs A (1975) Acclimatization and dissemination of the sunflower in Europe (in German). Acta Ethnogr Acad Sci Hung 24:47-88
57. Takezaki N, Nei M (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite data. Genetics 144:389-399
58. Takahashi K, Nei M (2000) Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Mol Biol Evol 17:1251-1258
59. Tang S, Yu JK, Slabaugh MB, Shintani DK, Knapp SJ (2002) Simple sequence repeat map of the sunflower genome. Theor Appl Genet (in press)
60. Tersac M, Blanchard P, Brunel D, Vincourt P (1994) Relations between heterosis and enzymatic polymorphism in populations of cultivated sunflowers (Helianthus annuus L.). Theor Appl Genet 88:49-55
61. Valdes AM, Slatkin M, Freimer NB (1993) Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133:737-749
62. Webb DM, Knapp SJ (1990) DNA extraction from a previously recalcitrant plant genus. Mol Biol Rep 8:180-185
63. Whiting AE (1939) Ethnobotany of the Hopi. Mus Northern Ariz Bull 15
64. Yu JK, Mangor J, Thompson L, Edwards KJ, Slabaugh MB, Knapp SJ (2002a) Allelic diversity of simple sequence repeat markers among elite inbred lines in cultivated sunflower. Genome 45:652-660
65. Yu JK, Tang S, Slabaugh MB, Heesacker A, Cole G, Herring M, Soper J, Han F, Webb DM, Thompson L, Edwards KJ, Berry S, Leon A, Olungu C, Maes N, Knapp SJ (2002b) Towards a saturated molecular genetic linkage map for sunflower. Crop Sci (in press)