Multiplexed sandwich assays in microarray format

Journal of Immunological Methods

Volumn 290, Issue 1-2, 2004, Pages 107-120

  Nielsen, Ulrik B ^a   Geierstanger, Bernhard H ^b  

^a MERRIMACK PHARMACEUTICALS   (United States)

^b GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

Author keywords

ELISA; Microarray; Multiplexed sandwich assays

Indexed keywords

ANTIBODY; DNA; RECOMBINANT ANTIBODY; RNA;

ANALYTIC METHOD; DIAGNOSTIC PROCEDURE; DNA MICROARRAY; ENZYME IMMUNOASSAY; ENZYME LINKED IMMUNOSORBENT ASSAY; HUMAN; MEDICAL TECHNOLOGY; MULTIVARIATE ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN MICROARRAY; REVIEW; SAMPLING; SIGNAL TRANSDUCTION;

ANIMALS; ANTIBODIES; ENZYME-LINKED IMMUNOSORBENT ASSAY; MICE; PROTEIN ARRAY ANALYSIS; SIGNAL TRANSDUCTION;

EID: 3142773316     PISSN: 00221759     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jim.2004.04.012     Document Type: Review

References (55)

1. Amersdorfer P., Wong C., Chen S., Smith T., Deshpande S., Sheridan R., Finnern R., Marks J.D. Molecular characterization of murine humoral immune response to botulinum neurotoxin type A binding domain as assessed by using phage antibody libraries. Infect. Immun. 65:1997;3743
2. Angenendt P., Gloekler J., Murphy D., Lehrach H., Cahill Dolores J. Toward optimized antibody microarrays: a comparison of current microarray support materials. Anal. Biochem. 309:2002;253
3. Arenkov P., Kukhtin A., Gemmell A., Voloshchuk S., Chupeeva V., Mizabekov A. Protein Microchips: use for Immunoassay and enzymatic reactions. Anal. Biochem. 278:2000;123
4. Belov L., de la Vega O., dos Remedios C.G., Mulligan S.P., Christopherson R.I. Immunophenotyping of leukemias using a cluster of differentiation antibody microarray. Cancer Res. 61:2001;4483
5. Beste G., Schmidt F.S., Stibora T., Skerra A. Small antibody-like proteins with prescribed ligand specificities derived from the lipocalin fold. Proc. Natl. Acad. Sci. U. S. A. 96:1999;1898
6. Boder E.T., Wittrup K.D. Optimal screening of surface-displayed polypeptide libraries. Biotechnol. Prog. 14:1998;55
7. Brody E.N., Willis M.C., Smith J.D., Jayasena S., Zichi D., Gold L. The use of aptamers in large arrays for molecular diagnostics. Mol. Diagn. 4:1999;381
8. Butler J.E., Ni L., Nessler R., Joshi K.S., Suter M., Rosenberg B., Chang J., Brown W.R., Cantarero L.A. The physical and functional behavior of capture antibodies adsorbed on polystyrene. J. Immunol. Methods. 150:1992;77
9. Chames P., Coulon S., Baty D. Improving the affinity and the fine specificity of an anti-cortisol antibody by parsimonious mutagenesis and phage display. J. Immunol. 161:1998;5421
10. Cutler P. Protein arrays: the current state-of-the-art. Proteomics. 3:2003;3
11. Ekins R.P. Ligand assays: from electrophoresis to miniturized microarrays. Clin. Chem. 44:1998;2015
12. Feldhaus M.J., Siegel R.W., Opresko L.K., Coleman J.R., Feldhaus J.M., Yeung Y.A., Cochran J.R., Heinzelman P., Colby D., Swers J., Graff C., Wiley H.S., Wittrup K.D. Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library. Nat. Biotechnol. 21:2003;163
13. Forman J.E., Suseno A.D., Wagner P. Surface and printing effects on fluorescent images of immobilized biomolecule arrays. Methods Enzymol. 361:2003;530
14. Guschin D., Yershov G., Zaslavsky A., Gemmell A., Shick V., Proudnikov D., Arenkov P., Mirzabekov Manual manufacturing of oligonucleotide, DNA and protein microchips. Anal. Biochem. 250:1997;203
15. Haab B.B., Dunham M.J., Brown P.O. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2(2):2001;1-13
16. Hanes J., Schaffitzel C., Knappik A., Pluckthun A. Picomolar affinity antibodies from a fully synthetic naive library selected and evolved by ribosome display. Nat. Biotechnol. 18:2000;1287
17. Holt L.J., Enever C., de Wildt R.M., Tomlinson I.M. The use of recombinant antibodies in proteomics. Curr. Opin. Biotechnol. 11:2000;445
18. Huang J.X., Mehrens D., Wiese R., Lee S., Tam S.W., Daniel S., Gilmore J., Shi M., Lashkari D. High-throughput genomic and proteomic analysis using microarray technology. Clin. Chem. 47:2001;1912
19. Joos T.O., Schrenk M., Hopfl P., Kroger K., Chowdhury U., Stoll D., Schorner D., Durr M., Herick K., Rupp S., Sohn K., Hammerle H. A microarray enzyme-linked immunosorbent assay for autoimmune diagnostics. Electrophoresis. 21:2000;2641
20. Joos T.O., Stoll D., Templin M.F. Miniaturised multiplexed immunoassays. Curr. Opin. Chem. Biol. 6:2002;76
21. Knezevic V., Leethanakul C., Bichsel V.E., Worth J.M., Prabhu V.V., Gutkind J.S., Liotta L.A., Munson P.J., Petricoin E.F., Krizman D.B. Proteomic profiling of the cancer microenvironment by antibody arrays. Proteomics. 1:2001;1271
22. Kodadek T. Protein microarrays: prospects and problems. Chem. Biol. 8:2001;105
23. Kusnezow W., Jacob A., Wakijew A., Diehl F., Hoheisel J.D. Antibody microarrays: an evaluation of production parameters. Proteomics. 3:2003;254
24. Lohse P.A., Wright M.C. In vitro protein display in drug discovery. Curr. Opin. Drug Discov. Dev. 4:2001;198
25. MacBeath G. Protein microarrays and proteomics. Nat. Genet. 32:2002;526
26. Mendoza L.G., McQuary P., Mongan A., Gangadharan R., Brignac S., Eggers M. High-throughput microarray-based enzyme-linked immunosorbent assay (ELISA). BioTechniques. 27:1999;778
27. Miller J.C., Butler E.B., Teh B.S., Haab B.B. The application of protein microarrays to serum diagnostics: prostate cancer as a test case. Dis. Markers. 17:2001;225
28. Miller Jeremy C., Zhou H., Kwekel J., Cavallo R., Burke J., Butler E.B., Teh Bin S., Haab Brian B. Antibody microarray profiling of human prostate cancer sera: antibody screening and identification of potential biomarkers. Proteomics. 3:2003;56
29. Mirzabekov A., Kolchinsky A. Emerging array-based technologies in proteomics. Curr. Opin. Chem. Biol. 2001;6
30. Moody M.D., Van Arsdell S.W., Murphy K.P., Orencole S.F., Burns C. Array-based ELISAs for high-throughput analysis of human cytokines. BioTechniques. 31:2001;186
31. Negm R.S., Verma M., Srivastava S. The promise of biomarkers in cancer screening and detection. Trends Mol. Med. 8:2002;288
32. Nielsen U.B., Cardone M.H., Sinskey A.J., MacBeath G., Sorger P.K. Profiling receptor tyrosine kinase activation by using Ab microarrays. Proc. Natl. Acad. Sci. U. S. A. 100:2003;9330
33. Paweletz C.P., Charboneau L., Bichsel V.E., Simone N.L., Chen T., Gillespie J.W., Emmert-Buck M.R., Roth M.J., Petricoin I.E., Liotta L.A. Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene. 20:2001;1981
34. Pawlak M., Schick E., Bopp M.A., Schneider M.J., Oroszlan P., Ehrat M. Zeptosens' protein microarrays: a novel high performance microarray platform for low abundance protein analysis. Proteomics. 2:2002;383
35. Peluso P., Wilson D.S., Do D., Tran H., Venkatasubbaiah M., Quincy D., Heidecker B., Poindexter K., Tolani N., Phelan M., Witte K., Jung L.S., Wagner P., Nock S. Optimizing antibody immobilization strategies for the construction of protein microarrays. Anal. Biochem. 312:2003;113
36. Robinson W.H., DiGennaro C., Hueber W., Haab B.B., Kamachi M., Dean E.J., Fournel S., Fong D., Genovese M.C., de Vegvar H.E., Skriner K., Hirschberg D.L., Morris R.I., Muller S., Pruijn G.J., van Venrooij W.J., Smolen J.S., Brown P.O., Steinman L., Utz P.J. Autoantigen microarrays for multiplex characterization of autoantibody responses. Nat. Med. 8:2002;295
37. Schier R., McCall A., Adams G.P., Marshall K.W., Merritt H., Yim M., Crawford R.S., Weiner L.M., Marks C., Marks J.D. Isolation of picomolar affinity anti-c-erbB-2 single-chain Fv by molecular evolution of the complementarity determining regions in the center of the antibody binding site. J. Mol. Biol. 263:1996;551
38. Schweitzer B., Kingsmore S.F. Measuring proteins on microarrays. Curr. Opin. Biotechnol. 13:2002;14
39. Schweitzer B., Roberts S., Grimwade B., Shao W., Wang M., Fu Q., Shu Q., Laroche I., Zhou Z., Tchernev V.T., Christiansen J., Velleca M., Kingsmore S.F. Multiplexed protein profiling on microarrays by rolling-circle amplification. Nat. Biotechnol. 20:2002;359
40. Scorilas A., Bjartell A., Lilja H., Moller C., Diamandis E.P. Streptavidin-polyvinylamine conjugates labeled wit a europium chelate: applications in immunoassay, immunohistochemistry, and microarrays. Clin. Chem. 46:2000;1450
41. Tam S.W., Wiese R., Lee S., Gilmore J., Kumble K.D. Simultaneous analysis of eight human Th1/Th2 cytokines using microarrays. J. Immunol. Methods. 261:2002;157
42. Templin M.F., Stoll D., Schrenk M., Traub P.C., Vohringer C.F., Joos T.O. Protein microarray technology. Drug Discov. Today. 7:2002;815
43. Vasiliskov A.V., Timofeev E.N., Surzhikov S.A., Drobyshev A.L., Shick V.V., Mirzabekov A.D. Fabrication of microarray of gel-immobilized compounds on a chip by copolymerization. BioTechniques. 27:1999;592
44. Wang C.C., Huang R.-P., Sommer M., Lisoukov H., Huang R., Lin Y., Miller T., Bruker J. Array-based multiplexed screening and quantitation of human cytokines and chemokines. J. Proteome Res. 1:2002;337
45. Weng S., Gu K., Hammond P.W., Lohse P., Rise C., Wagner R.W., Wright M.C., Kuimelis R.G. Generating addressable protein microarrays with PROfusion covalent mRNA-protein fusion technology. Proteomics. 2:2002;48
46. Wiese R., Belosludtsev Y., Powdrill T., Thompson P., Hogan M. Simultaneous multianalyte ELISA performed on a microarray platform. Clin. Chem. 47:2001;1451
47. Wilson D.S., Nock S. Recent developments in protein microarray technology. Angew. Chem. Intl. Ed. 42:2003;494
48. Winter G., Griffiths A.D., Hawkins R.E., Hoogenboom H.R. Making antibodies by phage display technology. Annu. Rev. Immunol. 12:1994;433
49. Wodicka L., Dong H., Mittmann M., Ho M.H., Lockhart D.J. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15:1997;1359
50. Woodbury R.L., Varnum S.M., Zangar R.C. Elevated HGF levels in sera from breast cancer patients detected using a protein microarray ELISA. J. Proteome Res. 1:2002;233
51. Xu L., Aha P., Gu K., Kuimelis R.G., Kurz M., Lam T., Lim A.C., Liu H., Lohse P.A., Sun L., Weng S., Wagner R.W., Lipovsek D. Directed evolution of high-affinity antibody mimics using mRNA display. Chem. Biol. 9:2002;933
52. Yguerabide J., Yguerabide E.E. Light-scattering submicroscopic particles as highly fluorescent analogs and their use as tracer labels in clinical and biological applications. I. Theory. Anal. Biochem. 262:1998;137-156
53. Yguerabide J., Yguerabide E.E. Light-scattering submicroscopic particles as highly fluorescent analogs and their use as tracer labels in clinical and biological applications II. Experimental Characterization. Anal. Biochem. 262:1998;157-176
54. Zhu H., Klemic J.F., Chang S., Bertone P., Casamayor A., Klemic K.G., Smith D., Gerstein M., Reed M.A., Snyder M. Analysis of yeast protein kinases using protein chips. Nat. Genet. 26:2000;283
55. Zhu H., Bilgin M., Bangham R., Hall D., Casamayor A., Bertone P., Lan N., Jansen R., Bidlingmaier S., Houfek T., Mitchell T., Miller P., Dean R.A., Gerstein M., Snyder M. Global analysis of protein activities using proteome chips. Science. 293:2001;2101