Activity-based probes for the proteomic profiling of metalloproteases

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 27, 2004, Pages 10000-10005

  Saghatelian, Alan ^a   Jessani, Nadim ^a   Joseph, Arul ^a   Humphrey, Mark ^a   Cravatt, Benjamin F ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOPEPTIDASE; BENZOPHENONE; DIPEPTIDYL PEPTIDASE; ENZYME PRECURSOR; ILOMASTAT; MARIMASTAT; MATRIX METALLOPROTEINASE INHIBITOR; MEMBRANE METALLOENDOPEPTIDASE; METALLOPROTEINASE; ZINC;

ARTICLE; CANCER; CROSS LINKING; DRUG STRUCTURE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME BINDING; ENZYME MODIFICATION; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROCESSING; PROTEIN TARGETING; PROTEOMICS; RNA TRANSLATION; SEQUENCE HOMOLOGY; TISSUE REGENERATION;

DIPEPTIDES; HUMANS; MELANOMA; METALLOPROTEASES; NEPRILYSIN; PROTEOMICS;

EID: 3042831921     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0402784101     Document Type: Article

References (51)

1. Patterson, S. D. & Aebersold, R. (2003) Nat. Genet. 33, 311-323.
2. Adam, G. C., Sorensen, E. J. & Cravatt, B. F. (2002) Mol. Cell. Proteomics 1, 781-790.
3. Michnick, S. W. (2004) Drug Discovery Today 9, 262-267.
4. Patton, W. F., Schulenberg, B. & Steinberg, T. H. (2002) Curr. Opin. Biotechnol. 13, 321-328.
5. Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H. & Aebersold, R. (1999) Nat. Biotechnol. 17, 994-999.
6. Kobe, B. & Kemp, B. E. (1999) Nature 402, 373-376.
7. Jessani, N. & Cravatt, B. F. (2004) Curr. Opin. Chem. Biol. 8, 54-59.
8. Speers, A. E. & Cravatt, B. F. (2004) ChemBioChem 5, 41-47.
9. Liu, Y., Patricelli, M. P. & Cravatt, B. F. (1999) Proc. Natl. Acad. Sci. USA 96, 14694-14699.
10. Kidd, D., Liu, Y. & Cravatt, B. F. (2001) Biochemistry 40, 6107-6115.
11. Patricelli, M. P., Giang, D. K., Stamp, L. M. & Burbaum, J. J. (2001) Proteomics 1, 1067-1071.
12. Jessani, N., Liu, Y., Humphrey, M. & Cravatt, B. F. (2002) Proc. Natl. Acad. Sci. USA 99, 10335-10340.
13. Greenbaum, D., Medzihradszky, K. F., Burlingame, A. & Bogyo, M. (2000) Chem. Biol. 7, 569-581.
14. Borodovsky, A., Ovaa, H., Kolli, N., Gan-Erdene, T., Wilkinson, K. D., Ploegh, H. L. & Kessler, B. M. (2002) Chem. Biol. 9, 1149-1159.
15. Faleiro, L., Kobayashi, R., Fearnhead, H. & Lazebnik, Y. (1997) EMBO J. 16, 2271-2281.
16. Adam, G. C., Cravatt, B. F. & Sorensen, E. J. (2001) Chem. Biol. 8, 81-95.
17. Adam, G. C., Cravatt, B. F. & Sorensen, E. J. (2002) Nat. Biotechnol. 20, 805-809.
18. Leung, D., Hardouin, C., Boger, D. L. & Cravatt, B. F. (2003) Nat. Biotechnol. 21, 687-691.
19. Greenbaum, D., Baruch, A., Hayrapetian, L., Darula, Z., Burlingame, A., Medzihradszky, K. F. & Bogyo, M. (2002) Mol. Cell. Proteomics 1, 60-68.
20. Speers, A. E., Adam, G. C. & Cravatt, B. F. (2003) J. Am. Chem. Soc. 125, 4686-4687.
21. Speers, A. E. & Cravatt, B. F. (2004) Chem. Biol. 11, 535-546.
22. Ovaa, H., van Swieten, P. F., Kessler, B. M., Leeuwenburgh, M. A., Fiebiger, E., van den Nieuwendijk, A. M., Galardy, P. J., van der Marel, G. A., Ploegh, H. L. & Overkleeft, H. S. (2003) Angew. Chem. Int. Ed. Engl. 42, 3626-3629.
23. Overall, C. M. & Lopez-Otin, C. (2002) Nat. Rev. Cancer 2, 657-672.
24. Peunte, X. S., Sanchez, L. M., Overall, C. M. & Lopez-Otin, C. (2003) Nat. Rev. Genet. 4, 544-558.
25. Chang, C. & Werb, Z. (2001) Trends Cell Biol. 11, S37-43.
26. Turner, A. J., Isaac, R. E. & Coates, D. (2001) BioEssays 23, 261-269.
27. Troeberg, L. & Nagase, H. (2003) Methods Mol. Biol. 225, 77-87.
28. Coussens, L. M., Fingleton, B. & Matrisian, L. M. (2002) Science 295, 2387-2392.
29. Coleman, J. E. (1998) Curr. Opin. Chem. Biol. 2, 222-234.
30. Adam, G. C., Sorensen, E. J. & Cravatt, B. F. (2002) Mol. Cell. Proteomics 1, 828-835.
31. Bogyo, M. & Wang, E. W. (2002) Curr. Top. Microbiol. Immunol. 268, 184-208.
32. Kim, D. H. & Mobashery, S. (2001) Curr. Med. Chem. 8, 959-965.
33. Rasnick, D. & Powers, J. C. (1978) Biochemistry 17, 4363-4369.
34. Brown, S., Bernardo, M. M., Li, Z.-H., Kotra, L. P., Tanaka, Y., Fridman, R. & Mobashery, S. (2000) J. Am. Chem. Soc. 122, 3410-3411.
35. Li, Y. M., Xu, M., Lai, M. T., Huang, Q., Castro, J. L., DiMuzio-Mower, J., Harrison, T., Lellis, C., Nadin, A., Neduvelil, J. G., et al. (2000) Nature 405, 689-694.
36. Hagenstein, M. C., Mussgnug, J. H., Lotte, K., Plessow, R., Brockhinke, A., Kruse, O. & Sewald, N. (2003) Angew. Chem. Int. Ed. Engl. 42, 5635-5638.
37. Whittaker, M., Floyd, C. D., Brown, P. & Gearing, A. J. H. (1999) Chem. Rev. 99, 2735-2776.
38. Seftor, E. A., Meltzer, P. S., Kirschmann, D. A., Pe'er, J., Maniotis, A. J., Trent, J. M., Folberg, R. & Hendrix, M. J. (2002) Clin. Exp. Metastasis 19, 233-246.
39. Freije, J. R. & Bischoff, R. (2003) J. Chromatogr. 1009, 3541-3544.
40. Papandreou, C. N., Usmani, B., Geng, Y., Bogenrieder, T., Freeman, R., Wilk, S., FInstad, C. L., Reuter, V. E., Powell, C. T., Scheinberg, D., et al. (1998) Nat. Med. 4, 50-57.
41. Shipp, M. A., Tarr, G. E., Chen, C.-Y., Switzer, S. N., Hersh, L. B., Stein, H., Sunday, M. E. & Reinherz, E. L. (1991) Proc. Natl. Acad. Sci. USA 88, 10662-10666.
42. Yao, T., Takata, M., Tustsumi, S., Nishiyama, K., Taguchi, K., Nagai, E. & Tsuneyoshi, M. (2002) Pathology 34, 556-506.
43. Mikami, Y., Hata, S., Kiyokama, T. & Manabe, T. (2002) Mod. Pathol. 15, 923-930.
44. Kanitakis, J., Narvaez, D. & Claudy, A. (2002) Melanoma Res. 12, 241-244.
45. Levy, D. E., Lapierre, F., Liang, W., Ye, W., Lange, C. W., Li, X., Grobelny, D., Casabonne, M., Tyrrell, D., Holme, K., et al. (1998) J. Med. Chem. 41, 199-223.
46. Marcotte, P. A., Elmore, I. N., Guan, Z., Magoc, T. J., Albert, D. H., Morgand, D. W., Curtin, M. L., Garland, R. B., Guo, Y., Heyman, H. R., et al. (1999) J. Enzyme Inhib. 14, 425-435.
47. Adam, G. C., Burbaum, J. J., Kozarich, J. W., Patricelli, M. P. & Cravatt, B. F. (2004) J. Am. Chem. Soc. 126, 1363-1368.
48. Marks, P. A., Richon, V. M., Breslow, R. & Rifkind, R. A. (2001) Curr. Opin. Oncol. 13, 477-483.
49. Nelson, A. R., Fingleton, B., Rothenberg, M. L. & Matrisian, L. M. (2000) J. Clin. Oncol. 18, 1135-1149.
50. Dhanaraj, V., Ye, Q.-Z., Johnson, L. L., Hupe, D. J., Ortwine, D. F., Dunbar, J. B., Jr., Rubin, J. R., Pavlovsky, A., Humblet, C. & Blundell, T. L. (1996) Structure 4, 375-386.
51. Yamamoto, M., Tsujishita, H., Hori, N., Ohishi, Y., Inoue, S., Ikeda, S. & Okada, Y. (1998) J. Med. Chem. 41, 1209-1217.