-
1
-
-
0037204953
-
A road map for those who know JAK-STAT
-
Aaronson, D. S., and C. M. Horvath. 2002, A road map for those who know JAK-STAT. Science. 296:1653-1655.
-
(2002)
Science
, vol.296
, pp. 1653-1655
-
-
Aaronson, D.S.1
Horvath, C.M.2
-
2
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla, U. S., and R. Iyengar. 1999. Emergent properties of networks of biological signaling pathways. Science. 283:381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
3
-
-
0037142769
-
Metabolic pathway analysis of a recombinant yeast for rational strain development
-
Carlson, R., D. Fell, and F. Srienc. 2002. Metabolic pathway analysis of a recombinant yeast for rational strain development. Biotechnol. Bioeng. 79:121-134.
-
(2002)
Biotechnol. Bioeng.
, vol.79
, pp. 121-134
-
-
Carlson, R.1
Fell, D.2
Srienc, F.3
-
4
-
-
0023714694
-
Stoichiometric network analysis
-
Clarke, B. L. 1988. Stoichiometric network analysis. Cell Biophys. 12:237-253.
-
(1988)
Cell Biophys.
, vol.12
, pp. 237-253
-
-
Clarke, B.L.1
-
5
-
-
0037008673
-
Transcriptional Regulation in Constraints-based Metabolic Models of Escherichia coli
-
Covert, M. W., and B. O. Palsson. 2002. Transcriptional Regulation in Constraints-based Metabolic Models of Escherichia coli. J. Biol. Chem. 277:28058-28064.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 28058-28064
-
-
Covert, M.W.1
Palsson, B.O.2
-
6
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
Covert, M. W., C. H. Schilling, and B. Palsson. 2001. Regulation of gene expression in flux balance models of metabolism. J. Theor. Biol. 213:73-88.
-
(2001)
J. Theor. Biol.
, vol.213
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
7
-
-
0035101820
-
Evolving concepts in G protein-coupled receptor endocytosis: The role in receptor desensitization and signaling
-
Ferguson, S. S. 2001. Evolving concepts in G protein-coupled receptor endocytosis: the role in receptor desensitization and signaling. Pharmacol. Rev. 53:1-24.
-
(2001)
Pharmacol. Rev.
, vol.53
, pp. 1-24
-
-
Ferguson, S.S.1
-
8
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Forster, J., I. Famili, P. Fu, B. B. Palsson, and J. Nielsen. 2003. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13:244-253.
-
(2003)
Genome Res.
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.B.4
Nielsen, J.5
-
9
-
-
0037590604
-
Overview of the Alliance for Cellular Signaling
-
Gilman, A. G., M. I. Simon, H. R. Bourne, B. A. Harris, R. Long, E. M. Ross, J. T. Stull, R. Taussig, A. P. Arkin, M. H. Cobb, J. G. Cyster, P. N. Devreotes, J. E. Ferrell, D. Fruman, M. Gold, A. Weiss, M. J. Berridge, L. C. Cantley, W. A. Catterall, S. R. Coughlin, E. N. Olson, T. F. Smith, J. S. Brugge, D. Botstein, J. E. Dixon, T. Hunter, R. J. Lefkowitz, A. J. Pawson, P. W. Sternberg, H. Varmus, S. Subramaniam, R. S. Sinkovits, J. Li, D. Mock, Y. Ning, B. Saunders, P. C. Stemweis, D. Hilgemann, R. H. Scheuermann, D. DeCamp, R. Hsueh, K. M. Lin, Y. Ni, W. E. Seaman, P. C. Simpson, T. D. O'Connell, T. Roach, S. Choi, P. Eversole-Cire, I. Fraser, M. C. Mumby, Y. Zhao, D. Brekken, H. Shu, T. Meyer, G. Chandy, W. D. Heo, J. Liou, N. O'Rourke, M. Verghese, S. M. Mumby, H. Han, H. A. Brown, J. S. Forrester, P. Ivanova, S. B. Milne, P. J. Casey, T. K. Harden, J. Doyle, M. L. Gray, S. Michnick, M. A. Schmidt, M. Toner, R. Y. Tsien, M. Natarajan, R. Ranganathan, and G. R. Sambrano. 2002. Overview of the Alliance for Cellular Signaling. Nature. 420:703-706.
-
(2002)
Nature
, vol.420
, pp. 703-706
-
-
Gilman, A.G.1
Simon, M.I.2
Bourne, H.R.3
Harris, B.A.4
Long, R.5
Ross, E.M.6
Stull, J.T.7
Taussig, R.8
Arkin, A.P.9
Cobb, M.H.10
Cyster, J.G.11
Devreotes, P.N.12
Ferrell, J.E.13
Fruman, D.14
Gold, M.15
Weiss, A.16
Berridge, M.J.17
Cantley, L.C.18
Catterall, W.A.19
Coughlin, S.R.20
Olson, E.N.21
Smith, T.F.22
Brugge, J.S.23
Botstein, D.24
Dixon, J.E.25
Hunter, T.26
Lefkowitz, R.J.27
Pawson, A.J.28
Sternberg, P.W.29
Varmus, H.30
Subramaniam, S.31
Sinkovits, R.S.32
Li, J.33
Mock, D.34
Ning, Y.35
Saunders, B.36
Stemweis, P.C.37
Hilgemann, D.38
Scheuermann, R.H.39
DeCamp, D.40
Hsueh, R.41
Lin, K.M.42
Ni, Y.43
Seaman, W.E.44
Simpson, P.C.45
O'Connell, T.D.46
Roach, T.47
Choi, S.48
Eversole-Cire, P.49
Fraser, I.50
Mumby, M.C.51
Zhao, Y.52
Brekken, D.53
Shu, H.54
Meyer, T.55
Chandy, G.56
Heo, W.D.57
Liou, J.58
O'Rourke, N.59
Verghese, M.60
Mumby, S.M.61
Han, H.62
Brown, H.A.63
Forrester, J.S.64
Ivanova, P.65
Milne, S.B.66
Casey, P.J.67
Harden, T.K.68
Doyle, J.69
Gray, M.L.70
Michnick, S.71
Schmidt, M.A.72
Toner, M.73
Tsien, R.Y.74
Natarajan, M.75
Ranganathan, R.76
Sambrano, G.R.77
more..
-
10
-
-
77956738429
-
Role of arrestins in G-protein-coupled receptor endocytosis
-
Goodman, O. B., Jr., J. G. Krupnick, F. Santini, V. V. Gurevich, R. B. Penn, A. W. Gagnon, J. H. Keen, and J. L. Benovic. 1998. Role of arrestins in G-protein-coupled receptor endocytosis. Adv. Pharmacol. 42:429-433.
-
(1998)
Adv. Pharmacol.
, vol.42
, pp. 429-433
-
-
Goodman Jr., O.B.1
Krupnick, J.G.2
Santini, F.3
Gurevich, V.V.4
Penn, R.B.5
Gagnon, A.W.6
Keen, J.H.7
Benovic, J.L.8
-
13
-
-
0037044575
-
The IkappaB-NF-kappaB signaling module: Temporal control and selective gene activation
-
Hoffmann, A., A. Levchenko, M. L. Scott, and D. Baltimore. 2002. The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. Science. 298:1241-1245.
-
(2002)
Science
, vol.298
, pp. 1241-1245
-
-
Hoffmann, A.1
Levchenko, A.2
Scott, M.L.3
Baltimore, D.4
-
14
-
-
0032542211
-
Repression of Stat3 activity by activation of mitogen-activated protein kinase (MAPK)
-
Jain, N., T. Zhang, S. L. Fong, C. P. Lim, and X. Cao. 1998. Repression of Stat3 activity by activation of mitogen-activated protein kinase (MAPK). Oncogene. 17:3157-3167.
-
(1998)
Oncogene
, vol.17
, pp. 3157-3167
-
-
Jain, N.1
Zhang, T.2
Fong, S.L.3
Lim, C.P.4
Cao, X.5
-
15
-
-
0037064037
-
Molecular kinetics of nerve growth factor receptor trafficking and activation
-
Jullien, J., V. Guili, L. F. Reichardt, and B. B. Rudkin. 2002. Molecular kinetics of nerve growth factor receptor trafficking and activation. J. Biol. Chem. 277:38700-38708.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 38700-38708
-
-
Jullien, J.1
Guili, V.2
Reichardt, L.F.3
Rudkin, B.B.4
-
16
-
-
0141561934
-
Alternate interferon signaling pathways
-
Kalvakolanu, D. V. 2003. Alternate interferon signaling pathways. Pharmacol. Ther. 100:1-29.
-
(2003)
Pharmacol. Ther.
, vol.100
, pp. 1-29
-
-
Kalvakolanu, D.V.1
-
17
-
-
0030571222
-
Pathway analysis, engineering and physiological considerations for redirecting central metabolism
-
Liao, J. C., S. Y. Hou, and Y. P. Chao. 1996. Pathway analysis, engineering and physiological considerations for redirecting central metabolism. Biotech. Bioeng. 52:129-140.
-
(1996)
Biotech. Bioeng.
, vol.52
, pp. 129-140
-
-
Liao, J.C.1
Hou, S.Y.2
Chao, Y.P.3
-
18
-
-
17144460324
-
STAT1 from the cell membrane to the DNA
-
Lillemeier, B. F., M. Koster, and I. M. Kerr. 2001. STAT1 from the cell membrane to the DNA. EMBO J. 20:2508-2517.
-
(2001)
EMBO J.
, vol.20
, pp. 2508-2517
-
-
Lillemeier, B.F.1
Koster, M.2
Kerr, I.M.3
-
20
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
Milo, R., S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, and U. Alon. 2002. Network motifs: simple building blocks of complex networks. Science. 298:824-827.
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
21
-
-
1442335464
-
Topological analysis of mass-balanced signaling networks: A framework to obtain emergent properties including crosstalk
-
Papin, J. A., and B. O. Palsson. 2003. Topological analysis of mass-balanced signaling networks: a framework to obtain emergent properties including crosstalk. J. Theor. Biol. 227:283-297.
-
(2003)
J. Theor. Biol.
, vol.227
, pp. 283-297
-
-
Papin, J.A.1
Palsson, B.O.2
-
22
-
-
0036350955
-
The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy
-
Papin, J. A., N. D. Price, J. S. Edwards, and B. O. Palsson. 2002a. The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. J. Theor. Biol. 215:67-82.
-
(2002)
J. Theor. Biol.
, vol.215
, pp. 67-82
-
-
Papin, J.A.1
Price, N.D.2
Edwards, J.S.3
Palsson, B.O.4
-
23
-
-
0036916269
-
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
-
Papin, J. A., N. D. Price, and B. O. Palsson. 2002b. Extreme pathway lengths and reaction participation in genome-scale metabolic networks. Genome Res. 12:1889-1900.
-
(2002)
Genome Res.
, vol.12
, pp. 1889-1900
-
-
Papin, J.A.1
Price, N.D.2
Palsson, B.O.3
-
24
-
-
0037727678
-
Metabolic pathways in the post-genome era
-
Papin, J. A., N. D. Price, S. J. Wiback, D. Fell, and B. O. Palsson. 2003. Metabolic pathways in the post-genome era. Trends Biochem. Sci. 28:250-258.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 250-258
-
-
Papin, J.A.1
Price, N.D.2
Wiback, S.J.3
Fell, D.4
Palsson, B.O.5
-
25
-
-
0037313015
-
Rho family GTPases are required for activation of Jak/STAT signaling by G protein-coupled receptors
-
Pelletier, S., F. Duhamel, P. Coulombe, M. R. Popoff, and S. Meloche. 2003. Rho family GTPases are required for activation of Jak/STAT signaling by G protein-coupled receptors. Mol. Cell. Biol. 23:1316-1333.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 1316-1333
-
-
Pelletier, S.1
Duhamel, F.2
Coulombe, P.3
Popoff, M.R.4
Meloche, S.5
-
26
-
-
0343035686
-
Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
-
Pramanik, J., and J. D. Keasling. 1997. Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotech. Bioeng. 56:398-421.
-
(1997)
Biotech. Bioeng.
, vol.56
, pp. 398-421
-
-
Pramanik, J.1
Keasling, J.D.2
-
27
-
-
0036100243
-
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis
-
Price, N. D., J. A. Papin, and B. O. Palsson. 2002. Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. Genome Res. 12:760-769.
-
(2002)
Genome Res.
, vol.12
, pp. 760-769
-
-
Price, N.D.1
Papin, J.A.2
Palsson, B.O.3
-
28
-
-
0037385718
-
Genome-scale microbial in silico models: The constraints-based approach
-
Price, N. D., J. A. Papin, C. H. Schilling, and B. O. Palsson. 2003. Genome-scale microbial in silico models: the constraints-based approach. Trends Biotechnol. 21:162-169.
-
(2003)
Trends Biotechnol.
, vol.21
, pp. 162-169
-
-
Price, N.D.1
Papin, J.A.2
Schilling, C.H.3
Palsson, B.O.4
-
29
-
-
0037406843
-
Thirteen years of building constraint-based in silico models of Escherichia coli
-
Reed, J. L., and B. O. Palsson. 2003. Thirteen years of building constraint-based in silico models of Escherichia coli. J. Bacteriol. 185:2692-2699.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2692-2699
-
-
Reed, J.L.1
Palsson, B.O.2
-
30
-
-
0037417817
-
Modular organization of cellular networks
-
Rives, A. W., and T. Galitski. 2003. Modular organization of cellular networks. Proc. Natl. Acad. Sci. USA. 100:1128-1133.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1128-1133
-
-
Rives, A.W.1
Galitski, T.2
-
31
-
-
0023020327
-
Regulation of intracellular protein turnover: Covalent modification as a mechanism of marking proteins for degradation
-
Rivett, A. J. 1986. Regulation of intracellular protein turnover: covalent modification as a mechanism of marking proteins for degradation. Curr. Top. Cell. Regul. 28:291-337.
-
(1986)
Curr. Top. Cell. Regul.
, vol.28
, pp. 291-337
-
-
Rivett, A.J.1
-
32
-
-
0004267646
-
-
Princeton University Press, Princeton. N.J.
-
Rockafellar, R. T. 1970. Convex Analysis. Princeton University Press, Princeton. N.J.
-
(1970)
Convex Analysis
-
-
Rockafellar, R.T.1
-
33
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
Schilling, C. H., D. Letscher, and B. O. Palsson. 2000. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. J. Theor. Biol. 203:229-248.
-
(2000)
J. Theor. Biol.
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
34
-
-
0036212767
-
Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
-
Schoeberl, B., C. Eichler-Jonsson, E. D. Gilles, and G. Muller. 2002. Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nat. Biotechnol. 20:370-375.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 370-375
-
-
Schoeberl, B.1
Eichler-Jonsson, C.2
Gilles, E.D.3
Muller, G.4
-
35
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster, S., D. A. Fell, and T. Dandekar. 2000. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotechnol. 18:326-332.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, T.3
-
36
-
-
0032910337
-
Interactions between mitogenic stimuli, or, a thousand and one connections
-
Schwartz, M. A., and V. Baron. 1999. Interactions between mitogenic stimuli, or, a thousand and one connections. Curr. Opin. Cell Biol. 11:197-202.
-
(1999)
Curr. Opin. Cell Biol.
, vol.11
, pp. 197-202
-
-
Schwartz, M.A.1
Baron, V.2
-
37
-
-
2642654227
-
MPW: The metabolic pathways database
-
Selkov, E., Jr., Y. Grechkin, N. Mikhailova, and E. Selkov. 1998. MPW: the Metabolic Pathways Database. Nucleic Acids Res. 26:43-45.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 43-45
-
-
Selkov Jr., E.1
Grechkin, Y.2
Mikhailova, N.3
Selkov, E.4
-
38
-
-
0242468041
-
Regulation of JAK-STAT signalling in the immune system
-
Shuai, K., and B. Liu. 2003. Regulation of JAK-STAT signalling in the immune system. Nat. Rev. Immunol. 3:900-911.
-
(2003)
Nat. Rev. Immunol.
, vol.3
, pp. 900-911
-
-
Shuai, K.1
Liu, B.2
-
39
-
-
0027945945
-
Premature microtubule-dependent cytoplasmic streaming in cappuccino and spire mutant oocytes
-
Theurkauf, W. E. 1994. Premature microtubule-dependent cytoplasmic streaming in cappuccino and spire mutant oocytes. Science. 265:2093-2096.
-
(1994)
Science
, vol.265
, pp. 2093-2096
-
-
Theurkauf, W.E.1
-
40
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
-
Varma, A., and B. O. Palsson. 1994. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl. Environ. Microbiol. 60:3724-3731.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
41
-
-
0025938677
-
Deactivation kinetics of the transduction cascade of vision
-
Vuong, T. M., and M. Chabre. 1991. Deactivation kinetics of the transduction cascade of vision. Proc. Natl. Acad. Sci. USA. 88:9813-9817.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 9813-9817
-
-
Vuong, T.M.1
Chabre, M.2
-
42
-
-
0142092727
-
Reconstructing metabolic flux vectors from extreme pathways: Defining the alpha-spectrum
-
Wiback, S. J., R. Mahadevan, and B. O. Palsson. 2003. Reconstructing metabolic flux vectors from extreme pathways: defining the alpha-spectrum. J. Theor. Biol. 224:313-324.
-
(2003)
J. Theor. Biol.
, vol.224
, pp. 313-324
-
-
Wiback, S.J.1
Mahadevan, R.2
Palsson, B.O.3
-
43
-
-
0347093460
-
Inhibitors of cytokine signal transduction
-
Wormald, S., and D. J. Hilton. 2004. Inhibitors of cytokine signal transduction. J. Biol. Chem. 279:821-824.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 821-824
-
-
Wormald, S.1
Hilton, D.J.2
-
44
-
-
0037448456
-
Control mechanism of JAK/STAT signal transduction pathway
-
Yamada, S., S. Shiono, A. Joo, and A. Yoshimura. 2003. Control mechanism of JAK/STAT signal transduction pathway. FEBS Lett. 534:190-196.
-
(2003)
FEBS Lett.
, vol.534
, pp. 190-196
-
-
Yamada, S.1
Shiono, S.2
Joo, A.3
Yoshimura, A.4
-
45
-
-
0015871909
-
In vitro synthesis of protein in microbial systems
-
Zubay, G. 1973. In vitro synthesis of protein in microbial systems. Annu. Rev. Genet. 7:267-287.
-
(1973)
Annu. Rev. Genet.
, vol.7
, pp. 267-287
-
-
Zubay, G.1
|