Biogenesis of cytochrome c oxidase

Mitochondrion

Volumn 5, Issue 6, 2005, Pages 363-388

  Khalimonchuk, Oleh ^a   Rödel, Gerhard ^a  

^a DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

Assembly factors; Cytochrome c oxidase; Metallation; Mitochondria

Indexed keywords

COPPER ION; CYTOCHROME C OXIDASE; GENE PRODUCT; HEME; METAL ION;

BIOGENESIS; CELL MEMBRANE TRANSPORT; COMPLEX FORMATION; ELECTRON TRANSPORT; ENZYME ACTIVE SITE; ENZYME MECHANISM; ENZYME STRUCTURE; ENZYME SUBUNIT; MAMMAL; MICROORGANISM; MITOCHONDRION; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; PROTEIN PROCESSING; REVIEW;

ANIMALS; BACTERIAL PROTEINS; ELECTRON TRANSPORT COMPLEX IV; HUMANS; MITOCHONDRIA; PROTEIN PROCESSING, POST-TRANSLATIONAL; SCHIZOSACCHAROMYCES;

MAMMALIA; PROKARYOTA;

EID: 29544449035     PISSN: 15677249     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mito.2005.08.002     Document Type: Review

References (243)

1. C. Abajian L.A. Yatsunyk B.E. Ramirez A.C. Rosenzweig Yeast Cox17 solution structure and Copper(I) binding J. Biol. Chem. 279 2004 53584-53592
2. R. Alves E. Herrero A. Sorribas Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism: I The role of the protein pair ferredoxin-ferredoxin reductase (Yah1-Arh1). Proteins 56 2004 354-366
3. R. Amaravadi D.M. Glerum A. Tzagoloff Isolation of a cDNA encoding the human homolog of COX17, a yeast gene essential for mitochondrial copper recruitment Hum. Genet. 99 1997 329-333
4. F. Arnesano L. Banci I. Bertini M. Martinelli Ortholog search of proteins involved in copper delivery to cytochrome C oxidase and functional analysis of paralogs and gene neighbors by genomic context J. Proteome Res. 4 2005 63-70
5. F. Arnesano E. Balatri L. Banci I. Bertini D.R. Winge Folding studies of Cox17 reveal an important interplay of cysteine oxidation and copper binding Structure (Cambr) 13 2005 713-722
6. E. Balatri L. Banci I. Bertini F. Cantini S. Ciofi-Baffoni Solution structure of Sco1: A thioredoxin-like protein Involved in cytochrome c oxidase assembly Structure (Camb) 11 2003 1431-1443
7. L. Banci I. Bertini F. Cantini S. Ciofi-Baffoni L. Gonnelli S. Mangani Solution structure of Cox11, a novel type of beta-immunoglobulin-like fold involved in CuB site formation of cytochrome c oxidase J. Biol. Chem. 279 2004 34833-34839
8. L. Banci I. Bertini S. Ciofi-Baffoni E. Katsari N. Katsaros K. Kubicek S. Mangani A copper(I) protein possibly involved in the assembly of CuA center of bacterial cytochrome c oxidase Proc. Natl. Acad. Sci. USA 102 2005 3994-3999
9. A. Barrientos A. Zambiano A. Tzagoloff Mss51p and Cox14p jointly regulate mitochondrial Cox1p expression in Saccharomyces cerevisiae EMBO J. 23 2004 3472-3482
10. M.H. Barros A. Tzagoloff Regulation of the heme A biosynthetic pathway in Saccharomyces cerevisiae FEBS Lett. 516 2002 119-123
11. M.H. Barros C.G. Carlson D.M. Glerum A. Tzagoloff Involvement of mitochondrial ferredoxin and Cox15p in hydroxylation of heme O FEBS Lett. 492 2001 133-138
12. M.H. Barros F.G. Nobrega A. Tzagoloff Mitochondrial ferredoxin is required for heme A synthesis in Saccharomyces cerevisiae J. Biol. Chem. 277 2002 9997-10002
13. M.H. Barros A. Johnson A. Tzagoloff COX23, a homologue of COX17, is required for cytochrome oxidase assembly J. Biol. Chem. 279 2004 31943-31947
14. B. Beauvoit M. Rigoulet Regulation of cytochrome c oxidase by adenylic nucleotides. Is oxidative phosphorylation feedback regulated by its end-products? IUBMB Life 52 2001 143-152
15. B. Beauvoit O. Bunoust B. Guerin M. Rigoulet ATP-regulation of cytochrome oxidase in yeast mitochondria. Role of subunit VIa Eur. J. Biochem. 263 1999 118-127
16. J. Beers D.M. Glerum A. Tzagoloff Purification, characterization, and localization of yeast Cox17p, a mitochondrial copper shuttle J. Biol. Chem. 272 1997 33191-33196
17. J. Beers D.M. Glerum A. Tzagoloff Purification and characterization of yeast Sco1p, a mitochondrial copper protein J. Biol. Chem. 277 2002 22185-22190
18. J. Bengtsson C. von Wachenfeldt L. Winstedt P. Nygaard L. Hederstedt CtaG is required for formation of active cytochrome c oxidase in Bacillus subtilis Microbiology 150 2004 415-425
19. M.R. Bratton M.A. Pressler J.P. Hosler Suicide inactivation of cytochrome c oxidase: Catalytic turnover in the absence of subunit III alters the active site Biochemistry 38 1999 16236-16245
20. M.R. Bratton L. Hiser W.E. Antholine C. Hoganson J.P. Hosler Identification of the structural subunits required for formation of the metal centers in subunit I of cytochrome c oxidase of Rhodobacter sphaeroides Biochemistry 39 2000 12989-12995
21. S.A. Broadley C.M. Demlow T.D. Fox Peripheral mitochondrial inner membrane protein. Mss2p, required for export of the mitochondrially coded Cox2p C tail in Saccharomyces cerevisiae Mol. Cell. Biol. 21 2001 7663-7672
22. N.G. Brown M.C. Costanzo T.D. Fox Interactions among three proteins that specifically activate translation of the mitochondrial COX3 mRNA in Saccharomyces cerevisiae Mol. Cell. Biol. 14 1994 1045-1053
23. K.R. Brown B.M. Allan P. Do E.L. Hegg Identification of novel hemes generated by heme A synthase: Evidence for two successive monooxygenase reactions Biochemistry 41 2002 10906-10913
24. P. Brzezinski M. Sundahl P. Adelroth M.T. Wilson B. el-Agez P. Wittung B.G. Malmstrom Triplet-state quenching in complexes between Zn-cytochrome c and cytochrome oxidase or its CuA domain Biophys. Chem. 54 1995 191-197
25. P. Buchwald G. Krummeck G. Rödel Immunological identification of yeast SCO1 protein as a component of the inner mitochondrial membrane Mol. Gen. Genet. 229 1991 413-420
26. M. Bureik B. Schiffler Y. Hiraoka F. Vogel R. Bernhardt Functional expression of human mitochondrial CYP11B2 in fission yeast and identification of a new internal electron transfer protein, etp1 Biochemistry 41 2002 2311-2321
27. P.V. Burke R.O. Poyton Structure/function of oxygen-regulated isoforms in cytochrome c oxidase J. Exp. Biol. 201 1998 1163-1175
28. G. Buse T. Soulimane M. Dewor H.E. Meyer M. Bluggel Evidence for a copper-coordinated histidine-tyrosine cross-link in the active site of cytochrome oxidase Protein Sci. 8 1999 985-990
29. R.A. Butow N.G. Avadhani Mitochondrial signaling: The retrograde response Mol. Cell. 14 2004 1-15
30. K.M. Calder J.E. McEwen Deletion of the COX7 gene in Saccharomyces cerevisiae reveals a role for cytochrome c oxidase subunit VII in assembly of remaining subunits Mol. Microbiol. 5 1991 1769-1777
31. J. Cao J. Hosler J. Shapleigh A. Revzin S. Ferguson-Miller Cytochrome aa3 of Rhodobacter sphaeroides as a model for mitochondrial cytochrome c oxidase. The coxII/coxIII operon codes for structural and assembly proteins homologous to those in yeast J. Biol. Chem. 267 1992 24273-24278
32. R.A. Capaldi Structure and function of cytochrome c oxidase Annu. Rev. Biochem. 59 1990 569-596
33. C.G. Carlson A. Barrientos A. Tzagoloff D.M. Glerum COX16 encodes a novel protein required for the assembly of cytochrome oxidase in Saccharomyces cerevisiae J. Biol. Chem. 278 2003 3770-3775
34. H.S. Carr D.R. Winge Assembly of cytochrome c oxidase within the mitochondrion Acc. Chem. Res. 36 2003 309-316
35. H.S. Carr G.N. George D.R. Winge Yeast Cox11, a protein essential for cytochrome c oxidase assembly, is a Cu(I)-binding protein J. Biol. Chem. 277 2002 31237-31242
36. H.S. Carr A.B. Maxfield Y.C. Horng D.R. Winge Functional analysis of the domains in Cox11 J. Biol. Chem. 2005 April 19, Epub.
37. W.S. Caughey G.A. Smythe D.H. O'Keeffe J.E. Maskasky M.I. Smith Heme A of cytochrome c oxicase. Structure and properties: Comparisons with hemes B, C, and S and derivatives J. Biol. Chem. 250 1975 7602-7622
38. P.A. Cobine L.D. Ojeda K.M. Rigby D.R. Winge Yeast contain a non-proteinaceous pool of copper in the mitochondrial matrix J. Biol. Chem. 279 2004 14447-14455
39. C.M. Cruciat S. Brunner F. Baumann W. Neupert R.A. Stuart The cytochrome bc1 and cytochrome c oxidase complexes associate to form a single supracomplex in yeast mitochondria J. Biol. Chem. 275 2000 18093-18098
40. A. Chacinska S. Pfannschmidt N. Wiedemann V. Kozjak L.K. Sanjuan-Szklarz A. Schulze-Specking K.N. Truscott B. Guiard C. Meisinger N. Pfanner Essential role of Mia40 in import and assembly of mitochondrial intermembrane space proteins EMBO J. 23 2004 3735-3746
41. Y.V. Chinenov Cytochrome c oxidase assembly factors with a thioredoxin fold are conserved among prokaryotes and eukaryotes J. Mol. Med. 78 2000 239-242
42. C. Church C. Chapon R.O. Poyton Cloning and characterization of PET100, a gene required for the assembly of yeast cytochrome c oxidase J. Biol. Chem. 271 1996 18499-18507
43. C. Church B. Goehring D. Forsha P. Wazny R.O. Poyton A role for Pet100p in the assembly of yeast cytochrome c oxidase: Interaction with a subassembly that accumulates in a pet100 mutant J. Biol. Chem. 280 2005 1854-1863
44. R.S. Conlan N. Gounalaki P. Hatzis D. Tzamarias The Tup1-Cyc8 protein complex can shift from a transcriptional co-repressor to a transcriptional co-activator J. Biol. Chem. 274 1999 205-210
45. G. Coruzzi A. Tzagoloff Assembly of the mitochondrial membrane system. DNA sequence of subunit 2 of yeast cytochrome oxidase J. Biol. Chem. 254 1979 9324-9330
46. M.C. Costanzo T.D. Fox Specific translational activation by nuclear gene products occurs in the 5′ untranslated leader of a yeast mitochondrial mRNA Proc. Natl. Acad. Sci. USA 85 1988 2677-2681
47. R.I. Cukier A molecular dynamics study of water chain formation in the proton-conducting K channel of cytochrome c oxidase Biochim. Biophys. Acta 1706 2005 134-146
48. D.M. Cyr R.A. Stuart W. Neupert A matrix ATP requirement for presequence translocation across the inner membrane of mitochondria J. Biol. Chem. 268 1993 23751-23754
49. T.K. Das C. Pecoraro F.L. Tomson R.B. Gennis D.L. Rousseau The post-translational modification in cytochrome c oxidase is required to establish a functional environment of the catalytic site Biochemistry 37 1998 14471-14476
50. J. Das S.T. Miller D.L. Stern Comparison of diverse protein sequences of the nuclear-encoded subunits of cytochrome c oxidase suggests conservation of structure underlies evolving functional sites Mol. Biol. Evol. 21 2004 1572-1582
51. E. Decoster M. Simon D. Hatat G. Faye The MSS51 gene product is required for the translation of the COX1 mRNA in yeast mitochondria Mol. Gen. Genet. 224 1990 111-118
52. E.K. Dickinson D.L. Adams E.A. Schon D.M. Glerum A human SCO2 mutation helps define the role of Sco1p in the cytochrome oxidase assembly pathway J. Biol. Chem. 275 2000 26780-26785
53. I. Dilova C.-Y. Chen T. Powers Mks1 in concert with TOR signaling negatively regulates RTG targtet gene expression in S. cerevisiae Curr. Biol. 12 2002 389-395
54. M.B. Eisen P.T. Spellman P.O. Brown D. Botstein Cluster analysis and display of genome-wide expression patterns Proc. Natl. Acad. Sci. USA 95 1998 14863-14868
55. A.J. Enright C.A. Ouzounis Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions Genome Biol. 2 2001 RESEARCH0034
56. C.B. Epstein J.A. Waddle W. Hale IV V. Dave J. Thornton T.L. Macatee H.R. Garner R.A. Butow Genome-wide responses to mitochondrial dysfunctions Mol. Biol. Cell 12 2001 297-308
57. H. Eubel L. Jänsch H.-P. Braun New insights into the respiratory chain of plant mitochondria. Supercomplexes and a unique composition of complex II Plant Physiol. 133 2003 274-286
58. H. Eubel J. Heinemeyer H.-P. Braun Identification and characterization of respirasomes in potato mitochondria Plant Physiol. 134 2004 1450-1459
59. M. Fabian D. Jancura G. Palmer Two sites of interaction of anions with cytochrome a in oxidized bovine cytochrome c oxidase J. Biol. Chem. 279 2004 16170-16177
60. M. Fabian L. Skultety D. Jancura G. Palmer Implications of ligand binding studies for the catalytic mechanism of cytochrome c oxidase Biochim. Biophys. Acta 1655 2004 298-305
61. J.A. Fee D. Sanders C.E. Slutter P.E. Doan R. Aasa M. Karpefors T. Vanngard Multi-frequency EPR evidence for a binuclear CuA center in cytochrome c oxidase: Studies with a 63Cu- and 65Cu-enriched, soluble domain of the cytochrome ba3 subunit II from Thermus thermophilus Biochem. Biophys. Res. Commun. 212 1995 77-83
62. S. Ferguson-Miller G.T. Babcock Heme/copper terminal oxidases Chem. Rev. 96 1996 2889-2908
63. A. Fiori M. Saliola P. Goffrini C. Falcone Isolation and molecular characterization of KlCOX14, a gene of Kluyveromyces lactis encoding a protein necessary for the assembly of the cytochrome oxidase complex Yeast 16 2000 307-314
64. A. Fiori T.L. Mason T.D. Fox Evidence that synthesis of the Saccharomyces cerevisiae mitochondrially encoded ribosomal protein Var1p may be membrane localized Eukaryot. Cell 2 2003 651-653
65. L. Florens B. Schmidt J. McCracken S. Ferguson-Miller Fast deuterium access to the buried magnesium/manganese site in cytochrome c oxidase Biochemistry 40 2001 7491-7497
66. P.F. Foltopoulou G.A. Zachariadis A.S. Politou A.S. Tsiftsoglou L.C. Papadopoulou Human recombinant mutated forms of the mitochondrial COX assembly Sco2 protein differ from wild-type in physical state and copper binding capacity Mol. Genet. Metab. 81 2004 225-236
67. D. Forsha C. Church P. Wazny R.O. Poyton Structure and function of Pet100p, a molecular chaperone required for the assembly of cytochrome c oxidase in Saccharomyces cerevisiae Biochem. Soc. Trans. 29 2001 436-441
68. T.G. Frey J.M. Murray Electron microscopy of cytochrome c oxidase crystals. Monomer-dimer relationship and cytochrome c binding site J. Mol. Biol. 237 1994 275-297
69. O. Gakh P. Cavadini G. Isaya Mitochondrial processing peptidases Biochim. Biophys. Acta 1592 2002 63-77
70. X. Gan M. Kitakawa K. Yoshino N. Oshiro K. Yonezawa K. Isono Tag-mediated isolation of yeast mitochondrial ribosome and mass spectrometric identification of its new components Eur. J. Biochem. 269 2002 5203-5214
71. A.C. Gavin M. Bosche R. Krause P. Grandi M. Marzioch A. Bauer J. Schultz J.M. Rick A.M. Michon C.M. Cruciat M. Remor C. Hofert M. Schelder M. Brajenovic H. Ruffner A. Merino K. Klein M. Hudak D. Dickson T. Rudi V. Gnau A. Bauch S. Bastuck B. Huhse C. Leutwein M.A. Heurtier R.R. Copley A. Edelmann E. Querfurth V. Rybin G. Drewes M. Raida T. Bouwmeester P. Bork B. Seraphin B. Kuster G. Neubauer G. Superti-Furga Functional organization of the yeast proteome by systematic analysis of protein complexes Nature 415 2002 141-147
72. B.M. Geier H. Schagger C. Ortwein T.A. Link W.R. Hagen U. Brandt G. Von Jagow Kinetic properties and ligand binding of the eleven-subunit cytochrome-c oxidase from Saccharomyce cerevisiae isolated with a novel large-scale purification method Eur. J. Biochem. 227 1995 296-302
73. R.B. Gennis How does cytochrome oxidase pump protons? Proc. Natl. Acad. Sci. USA 95 1998 12747-12749
74. B.R. Gibney Y. Isogai F. Rabanal K.S. Reddy A.M. Grosset C.C. Moser P.L. Dutton Self-assembly of heme A and heme B in a designed four-helix bundle: Implications for a cytochrome c oxidase maquette Biochemistry 39 2000 11041-11049
75. Gilderson, G., Salomonsson, L., Aagaard, A., Gray, J., Brzezinski, P., Hosler, J, 2003. Subunit III of cytochrome c oxidase of Rhodobacter sphaeroides is required to maintain rapid proton uptake through the D pathway at physiologic pH. Biochemistry 42, 7400-7409.
76. D.M. Glerum A. Tzagoloff Isolation of a human cDNA for heme A: farnesyltransferase by functional complementation of a yeast cox10 mutant Proc. Natl. Acad. Sci. USA 91 1994 8452-8456
77. D.M. Glerum A. Tzagoloff Submitochondrial distributions and stabilities of subunits 4, 5, and 6 of yeast cytochrome oxidase in assembly defective mutants FEBS Lett. 412 1997 410-414
78. D.M. Glerum T.J. Koerner A. Tzagoloff Cloning and characterization of COX14, whose product is required for assembly of yeast cytochrome oxidase J. Biol. Chem. 270 1995 15585-15590
79. D.M. Glerum A. Shtanko A. Tzagoloff Characterization of COX17, a yeast gene involved in copper metabolism and assembly of cytochrome oxidase J. Biol. Chem. 271 1996 14504-14509
80. D.M. Glerum A. Shtanko A. Tzagoloff SCO1 and SCO2 act as high copy suppressors of a mitochondrial copper recruitment defect in Saccharomyces cerevisiae J. Biol. Chem. 271 1996 20531-20535
81. D.M. Glerum I. Muroff C. Jin A. Tzagoloff COX15 codes for a mitochondrial protein essential for the assembly of yeast cytochrome oxidase J. Biol. Chem. 272 1977 19088-19094
82. V.M. Gohil P. Hayes S. Matsuyama H. Schägger M. Schlame M.L. Greenberg Cardiolipin biosynthesis and mitochondrial respiratory chain function are interdependent J. Biol. Chem. 279 2004 42612-42618
83. M.W. Gray B.F. Lang R. Cedergren G.B. Golding C. Lemieux D. Sankoff M. Turmel N. Brossard E. Delage T.G. Littlejohn I. Plante P. Rioux D. Saint-Louis Y. Zhu G. Burger Genome structure and gene content in protist mitochondrial DNAs Nucleic Acids Res. 26 1998 865-878
84. N.S. Green-Willms C.A. Butler H.M. Dunstan T.D. Fox Pet111p, an inner membrane-bound translational activator that limits expression of the Saccharomyces cerevisiae mitochondrial gene COX2 J. Biol. Chem. 276 2001 6392-6397
85. D. Guo J. Ling M.H. Wang J.X. She J. Gu C.Y. Wang Physical interaction and functional coupling between ACDP4 and the intracellular ion chaperone COX11, an implication of the role of ACDP4 in essential metal ion transport and homeostasis Molecular Pain 1 2005 15
86. T.C. Hallstrom S. Moye-Rowley Multiple signals from dysfunctional mitochondria activate the pleiotropic drug resistance pathway in Saccharomyces cerevisiae J. Biol. Chem. 275 2000 34347-34355
87. T. Haltia M. Saraste M. Wikstrom Subunit III of cytochrome c oxidase is not involved in proton translocation: A site-directed mutagenesis study EMBO J. 10 1991 2015-2021
88. I. Hamza J.D. Gitlin Copper chaperones for cytochrome c oxidase and human disease J. Bioenerg. Biomembr. 34 2002 381-388
89. E.D. Harris Cellular copper transport and metabolism Annu. Rev. Nutr. 20 2000 291-310
90. S. He T.D. Fox Membrane translocation of mitochondrially coded Cox2p: distinct requirements for export of N and C termini and dependence on the conserved protein Oxalp Mol. Biol. Cell 8 1997 1449-1460
91. S. He T.D. Fox Mutations affecting a yeast mitochondrial inner membrane protein, pnt1p, block export of a mitochondrially synthesized fusion protein from the matrix Mol. Cell. Biol. 19 1999 6598-6607
92. D. Heaton T. Nittis C. Srinivasan D.R. Winge Mutational analysis of the mitochondrial copper metallochaperone Cox17 J. Biol. Chem. 275 2000 37582-37587
93. D.N. Heaton G.N. George G. Garrison D.R. Winge The mitochondrial copper metallochaperone Cox17 exists as an oligomeric, polycopper complex Biochemistry 40 2001 743-751
94. K. Hell J. Herrmann E. Pratje W. Neupert R.A. Stuart Oxa1p mediates the export of the N- and C-termini of pCoxII from the mitochondrial matrix to the intermembrane space FEBS Lett. 418 1997 367-370
95. K. Hell A. Tzagoloff W. Neupert R.A. Stuart Identification of Cox20p, a novel protein involved in the maturation and assembly of cytochrome oxidase subunit 2 J. Biol. Chem. 275 2000 4571-4578
96. K. Hell W. Neupert R.A. Stuart Oxa1p acts as a general membrane insertion machinery for proteins encoded by mitochondrial DNA EMBO J. 20 2001 1281-1288
97. J.M. Herrmann W. Neupert Protein insertion into the inner membrane of mitochondria IUBMB Life 55 2003 219-225
98. J.M. Herrmann H. Koll R.A. Cook W. Neupert R.A. Stuart Topogenesis of cytochrome oxidase subunit II. Mechanisms of protein export from the mitochondrial matrix J. Biol. Chem. 270 1995 27079-27086
99. B.C. Hill The reaction of the electrostatic cytochrome c-cytochrome oxidase complex with oxygen J. Biol. Chem. 266 1991 2219-2226
100. O. Hori F. Ichinoda T. Tamatani A. Yamaguchi N. Sato K. Ozawa Y. Kitao M. Miyazaki H.P. Harding D. Ron M. Tohyama D.M. Stern S. Ogawa Transmission of cell stress from endoplasmic reticulum to mitochondria: enhanced expression of Lon protease J. Cell. Biol. 157 2002 1151-1160
101. T. Hirano T. Mogi M. Tsubaki H. Hori Y. Orii Y. Anraku A novel chloride-binding site modulates the heme-copper binuclear center of the Escherichia coli bo-type ubiquinol oxidase J. Biochem. (Tokyo) 122 1997 430-437
102. L. Hiser J.P. Hosler Heme A is not essential for assembly of the subunits of cytochrome c oxidase of Rhodobacter sphaeroides J. Biol. Chem. 276 2001 45403-45407
103. L. Hiser M. Di Valentin A.G. Hamer J.P. Hosler Cox11p is required for stable formation of the Cu(B) and magnesium centers of cytochrome c oxidase J. Biol. Chem. 275 2000 619-623
104. Y.C. Horng P.A. Cobine A.B. Maxfield H.S. Carr D.R. Winge Specific copper transfer from the Cox17 metallochaperone to both Sco1 and Cox11 in the assembly of yeast cytochrome c oxidase J. Biol. Chem. 279 2004 35334-35340
105. R. Horvath H. Lochmuller R. Stucka J. Yao E.A. Shoubridge S.H. Kim K.D. Gerbitz M. Jaksch Characterization of human SCO1 and COX17 genes in mitochondrial cytochrome-c-oxidase deficiency Biochem. Biophys. Res. Commun. 276 2000 530-533
106. J. Hosler The influence of subunit III of cytochrome c oxidase on the D pathway, the proton exit pathway and mechanism-based inactivation in subunit I Biochim. Biophys. Acta 1655 2004 332-339
107. E.C. Hurt D.S. Allison U. Müller G. Schatz Amino-terminal deletions in the presequence of an imported mitochondrial protein block the targeting function and proteolytic cleavage of the presequence at the carboxy terminus J. Biol. Chem. 262 1987 1420-1424
108. S. Iwata C. Ostermeier B. Ludwig H. Michel Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans Nature 376 1995 660-669
109. Y. Jia B. Rothermel J. Thornton R.A. Butow A basic helix-loop-helix zipper transcription complex functions in a signaling pathway from mitochondria to the nucleus Mol. Cell. Biol. 17 1997 1110-1117
110. L. Jia M. Dienhart M. Schramp M. McCauley K. Hell R.A. Stuart Yeast Oxa1 interacts with mitochondrial ribosomes: The importance of the C-terminal region of Oxa1 EMBO J. 22 2003 6438-6447
111. M. Jaksch I. Ogilvie J. Yao G. Kortenhaus H.G. Bresser K.D. Gerbitz E.A. Shoubridge Mutations in SCO2 are associated with a distinct form of hypertrophic cardiomyopathy and cytochrome c oxidase deficiency Hum. Mol. Genet. 9 2000 795-801
112. M. Jaksch C. Paret R. Stucka N. Horn J. Müller-Hocker R. Horvath N. Trepesch G. Stecker P. Freisinger C. Thirion J. Müller R. Lunkwitz G. Rödel E.A. Shoubridge H. Lochmüller Cytochrome c oxidase deficiency due to mutations in SCO2, encoding a mitochondrial copper-binding protein, is rescued by copper in human myoblasts Hum. Mol. Genet. 10 2001 3025-3035
113. K. Kako A. Takehara H. Arai T. Onodera Y. Takahashi H. Hanagata Y. Ogra H. Takagi H. Kodama K.T. Suzuki E. Munekata A. Fukamizu A selective requirement for copper-dependent activation of cytochrome c oxidase by Cox17p Biochem. Biophys. Res. Commun. 324 2004 1379-1385
114. J.A. Keightley B.H. Zimmermann M.W. Mather P. Springer A. Pastuszyn D.M. Lawrence J.A. Fee Molecular genetic and protein chemical characterization of the cytochrome ba3 from Thermus thermophilus HB8 J. Biol. Chem. 270 1995 20345-20358
115. O. Khalimonchuk K. Ostermann G. Rödel Evidence for the association of yeast mitochondrial ribosomes with Cox11p, a protein required for the Cu(B) site formation of cytochrome c oxidase Curr. Genet. 47 2005 223-233
116. H.J. Kim D.W. Graham A.A. DiSpirito M.A. Alterman N. Galeva C.K. Larive D. Asunskis P.M. Sherwood Methanobactin, a copper-acquisition compound from methane-oxidizing bacteria Science 305 2004 1612-1615
117. H.J. Kim N. Galeva C.K. Larive M. Alterman D.W. Graham Purification and Physical-Chemical Properties of Methanobactin: A Chalkophore from Methylosinus trichosporium OB3b Biochemistry 44 2005 5140-5148
118. A. Kirichenko T. Vygodina H.M. Mkrtchyan A. Konstantinov Specific cation binding site in mammalian cytochrome oxidase FEBS Lett. 423 1998 329-333
119. C.M. Koehler E. Jarosch K. Tokatlidis K. Schmid R.J. Schweyen G. Schatz Import of mitochondrial carriers mediated by essential proteins of the intermembrane space Science 279 1998 369-373
120. P.M. Kroneck W.A. Antholine J. Riester W.G. Zumft The cupric site in nitrous oxide reductase contains a mixed-valence [Cu(II),Cu(I)] binuclear center: A multifrequency electron paramagnetic resonance investigation FEBS Lett. 242 1988 70-74
121. G. Krummeck G. Rödel Yeast SCO1 protein is required for a post-translational step in the accumulation of mitochondrial cytochrome c oxidase subunits I and II Curr. Genet. 18 1990 13-15
122. B.F. Lang G. Burger C.J. O'Kelly R. Cedergren G.B. Golding C. Lemieux D. Sankoff M. Turmel M.W. Gray An ancestral mitochondrial DNA resembling a eubacterial genome in miniature Nature 387 1997 493-497
123. P. Lappalainen R. Aasa B.G. Malmstrom M. Saraste Soluble CuA-binding domain from the Paracoccus cytochrome c oxidase J. Biol. Chem. 268 1993 26416-26421
124. S. Larsson B. Kallebring P. Wittung B.G. Malmstrom The CuA center of cytochrome-c oxidase: Electronic structure and spectra of models compared to the properties of CuA domains Proc. Natl. Acad. Sci. USA 92 1995 7167-7171
125. S.C. Leary B.A. Kaufman G. Pellecchia G.H. Guercin A. Mattman M. Jaksch E.A. Shoubridge Human SCO1 and SCO2 have independent, cooperative functions in copper delivery to cytochrome c oxidase Hum. Mol. Genet. 13 2004 1839-1848
126. A. Lee A. Kirichenko T. Vygodina S.A. Siletsky T.K. Das D.L. Rousseau R. Gennis A.A. Konstantinov Ca(2+)-binding site in Rhodobacter sphaeroides cytochrome c oxidase Biochemistry 41 2002 8886-8898
127. C. Lemaire S. Robineau P. Netter Molecular and biochemical analysis of Saccharomyces cerevisiae cox1 mutants Curr. Genet. 34 1998 138-145
128. E. Lesuisse R. Santos B.F. Matzanke S.A. Knight J.M. Camadro A. Dancis Iron use for haeme synthesis is under control of the yeast frataxin homologue (Yfh1) Hum. Mol. Genet. 12 2003 879-889
129. X. Liao R.A. Butow RTG1 and RTG2: Two yeast genes required for a novel path of communication from mitochondria to the nucleus Cell 72 1993 61-71
130. Z. Liu T. Sekito C.B. Epstein R.A. Butow RTG-dependent mitochondria to nucleus signaling is negatively regulated by the seven WD-repeat protein Lst8p EMBO J. 20 2001 7209-7219
131. Z. Liu T. Sekito M. Spirek J. Thornton R.A. Butow Retrograde signaling is regulated by the dynamic interaction between Rtg2p and Mks1p Mol. Cell 12 2003 401-411
132. A. Lode M. Kuschel C. Paret G. Rödel Mitochondrial copper metabolism in yeast: Interaction between Sco1p and Cox2p FEBS Lett. 485 2000 19-24
133. A. Lode C. Paret G. Rödel Molecular characterization of Saccharomyces cerevisiae Sco2p reveals a high degree of redundancy with Sco1p Yeast 19 2002 909-922
134. B. Ludwig E. Bender S. Arnold M. Huttemann I. Lee B. Kadenbach Cytochrome c oxidase and the regulation of oxidative phosphorylation Chembiochem 2 2001 392-403
135. M. Lussier A.M. White J. Sheraton T. di Paolo J. Treadwell S.B. Southard C.I. Horenstein J. Chen-Weiner A.F.J. Ram J.C. Kapteyn T.W. Roemer D.H. Vo D.C. Bondoc J. Hall W.W. Zhong A.M. Sdicu J. Davies F.M. Klis P.W. Robbins H. Bussey Large scale identification of genes involved in cell surface biosynthesis and architecture in Saccharomyces cerevsiae Genetics 147 1997 435-450
136. B.G. Malmstrom R. Aasa The nature of the CuA center in cytochrome c oxidase FEBS Lett. 325 1993 49-52
137. G.M. Manthey J.E. McEwen The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae EMBO J. 14 1995 4031-4043
138. Margeot, A., Garcia, M., Wang, W., Tetaud, E., di Rago, J.P., Jacq, C., 2005 Why are many mRNAs translated to the vicinity of mitochondria: A role in protein complex assembly? Gene, Epub.
139. G. Mashkevich B. Repetto D.M. Glerum C. Jin A. Tzagoloff SHY1, the yeast homolog of the mammalian SURF-1 gene, encodes a mitochondrial protein required for respiration J. Biol. Chem. 272 1997 14356-14364
140. A.B. Maxfield D.N. Heaton D.R. Winge Cox17 is functional when tethered to the mitochondrial inner membrane J. Biol. Chem. 279 2004 5072-5080
141. J.E. McEwen K.H. Hong S. Park G.T. Preciado Sequence and chromosomal localization of two PET genes required for cytochrome c oxidase assembly in Saccharomyces cerevisiae Curr. Genet. 23 1993 9-14
142. B. Meunier J.W. Taanman Mutations of cytochrome c oxidase subunits 1 and 3 in Saccharomyces cerevisiae: Assembly defect and compensation Biochim. Biophys. Acta. 1554 2002 101-107
143. H. Michel J. Behr A. Harrenga A. Kannt Cytochrome c oxidase: Structure and spectroscopy Annu. Rev. Biophys. Biomol. Struct. 27 1998 329-356
144. B.R. Miller M.G. Cumsky Intramitochondrial sorting of the precursor to yeast cytochrome c oxidase subunit Va J. Cell Biol. 121 1993 1021-1029
145. D.A. Mills Z. Tan S. Ferguson-Miller J. Hosler A role for subunit III in proton uptake into the D pathway and a possible proton exit pathway in Rhodobacter sphaeroides cytochrome c oxidase Biochemistry 42 2003 7410-7417
146. T. Mogi K. Saiki Y. Anraku Biosynthesis and functional role of haem O and haem A Mol. Microbiol. 14 1994 391-398
147. U. Mühlenhoff N. Richhardt M. Ristow G. Kispal R. Lill The yeast frataxin homolog Yfh1p plays a specific role in the maturation of cellular Fe/S proteins Hum. Mol. Genet. 11 2002 2025-2036
148. U. Mühlenhoff J. Gerber N. Richhardt R. Lill Components involved in assembly and dislocation of iron-sulfur clusters on the scaffold protein Isu1p EMBO J. 22 2003 4815-4825
149. J.J. Mulero T.D. Fox Alteration of the Saccharomyces cerevisiae COX2 mRNA 5′-untranslated leader by mitochondrial gene replacement and functional interaction with the translational activator protein PET111 Mol. Biol. Cell 4 1993 1327-1335
150. J.J. Mulero T.D. Fox PET111 acts in the 5′-leader of the Saccharomyces cerevisiae mitochondrial COX2 mRNA to promote its translation Genetics 133 1993 509-516
151. A. Musatov N.C. Robinson Cholate-induced dimerization of detergent- or phospholipid-solubilized bovine cytochrome c oxidase Biochemistry 41 2002 4371-4376
152. S. Naithani S.A. Saracco C.A. Butler T.D. Fox Interactions among COX1, COX2, and COX3 mRNA-specific translational activator proteins on the inner surface of the mitochondrial inner membrane of Saccharomyces cerevisiae Mol. Biol. Cell 14 2003 324-333
153. T. Nakai Y. Mera T. Yasuhara A. Ohashi Divalent metal ion-dependent mitochondrial degradation of unassembled subunits 2 and 3 of cytochrome c oxidase J. Biochem. (Tokyo) 116 1994 752-758
154. M. Naoe Y. Ohwa D. Ishikawa C. Ohshima S.I. Nishikawa H. Yamamoto T. Endo Identification of Tim40 that mediates protein sorting to the mitochondrial intermembrane space J. Biol. Chem. 279 2004 47815-47821
155. Y. Naruta T. Sasaki F. Tani Y. Tachi N. Kawato N. Nakamura Heme-Cu complexes as oxygen-activating functional models for the active site of cytochrome c oxidase J. Inorg. Biochem. 83 2001 239-246
156. W. Neupert M. Brunner The protein import motor of mitochondria Nat. Rev. Mol. Cell. Biol. 3 2002 555-565
157. L.G. Nijtmans J.W. Taanman A.O. Muijsers D. Speijer C. Van den Bogert Assembly of cytochrome-c oxidase in cultured human cells Eur. J. Biochem. 254 1998 389-394
158. T. Nittis G.N. George D.R. Winge Yeast Sco1, a protein essential for cytochrome c oxidase function is a Cu(I)-binding protein J. Biol. Chem. 276 2001 42520-42526
159. M.P. Nobrega F.G. Nobrega A. Tzagoloff COX10 codes for a protein homologous to the ORF1 product of Paracoccus denitrificans and is required for the synthesis of yeast cytochrome oxidase J. Biol. Chem. 265 1990 14220-14226
160. M.P. Nobrega S.C. Bandeira J. Beers A. Tzagoloff Characterization of COX19, a widely distributed gene required for expression of mitochondrial cytochrome oxidase J. Biol. Chem. 277 2002 40206-40211
161. J. Nunnari T.D. Fox P. Walter A mitochondrial protease with two catalytic subunits of nonoverlapping specificities Science 262 1993 1997-2004
162. C. Ostermeier A. Harrenga U. Ermler H. Michel Structure at 2.7 Å resolution of the Paracoccus denitrificans two-subunit cytochrome c oxidase complexed with an antibody FV fragment Proc. Natl. Acad. Sci. U S A 94 1997 10547-10553
163. P. Palumaa L. Kangur A. Voronova R. Sillard Metal-binding mechanism of Cox17, a copper chaperone for cytochrome c oxidase Biochem. J. 382 2004 307-314
164. L.C. Papadopoulou C.M. Sue M.M. Davidson K. Tanji I. Nishino J.E. Sadlock S. Krishna W. Walker J. Selby D.M. Glerum R.V. Coster G. Lyon E. Scalais R. Lebel P. Kaplan S. Shanske D.C. De Vivo E. Bonilla M. Hirano S. DiMauro E.A. Schon Fatal infantile cardioencephalomyopathy with COX deficiency and mutations in SCO2, a COX assembly gene Nat. Genet. 23 1999 333-337
165. C. Paret K. Ostermann U. Krause-Buchholz A. Rentzsch G. Rödel Human members of the SCO1 gene family: Complementation analysis in yeast and intracellular localization FEBS Lett. 447 1999 65-70
166. C. Paret A. Lode U. Krause-Buchholz G. Rödel The P(174)L mutation in the human hSCO1 gene affects the assembly of cytochrome c oxidase Biochem. Biophys. Res. Commun. 279 2000 341-347
167. X. Perez-Martinez S.A. Broadley T.D. Fox Mss51p promotes mitochondrial Cox1p synthesis and interacts with newly synthesized Cox1p EMBO J. 22 2003 5951-5961
168. M.M. Pereira M. Santana M. Teixeira A novel scenario for the evolution of haem-copper oxygen reductases Biochim. Biophys. Acta 1505 2001 185-208
169. E. Petek C. Windpassinger J.B. Vincent J. Cheung A.P. Boright S.W. Scherer P.M. Kroisel K. Wagner Disruption of a novel gene (IMMP2L) by a breakpoint in 7q31 associated with Tourette syndrome Am. J. Hum. Genet. 68 2001 848-858
170. V. Petruzzella V. Tiranti P. Fernandez P. Ianna R. Carrozzo M. Zeviani Identification and characterization of human cDNAs specific to BCS1, PET112, SCO1, COX15, and COX11, five genes involved in the formation and function of the mitochondrial respiratory chain Genomics 54 1998 494-504
171. K. Pfeiffer V. Gohil R.A. Stuart C. Hunte U. Brandt M.L. Greenberg H. Schägger Cardiolipin stabilizes respiratory chain supercomplexes J. Biol. Chem. 278 2003 52873-52880
172. E. Pinakoulaki U. Pfitzner B. Ludwig C. Varotsis The role of the cross-link His-Tyr in the functional properties of the binuclear center in cytochrome c oxidase J. Biol. Chem. 277 2002 13563-13568
173. S.D. Power M.A. Lochrie R.O. Poyton The nuclear-coded subunits of yeast cytochrome c oxidase. III. Identification of homologous subunits in yeast, bovine heart, and Neurospora crassa cytochrome c oxidases J. Biol. Chem. 259 1984 6575-6578
174. A. Poyau K. Buchet C. Godinot Sequence conservation from human to prokaryotes of Surf1, a protein involved in cytochrome c oxidase assembly, deficient in Leigh syndrome FEBS Lett. 462 1999 416-420
175. R.O. Poyton J.E. McEwen Crosstalk between nuclear and mitochondrial genomes Annu. Rev. Biochem. 65 1996 563-607
176. R.O. Poyton D.M. Duhl G.H. Clarkson Protein export from the mitochondrial matrix Trends Cell. Biol. 2 1992 369-375
177. M. Preuss K. Leonhard K. Hell R.A. Stuart W. Neupert J.M. Herrmann Mba1, a novel component of the mitochondrial protein export machinery of the yeast Saccharomyces cerevisiae J. Cell. Biol. 153 2001 1085-1096
178. M. Preuss M. Ott S. Funes J. Luirink J.M. Herrmann Evolution of mitochondrial oxa proteins from bacterial YidC. Inherited and acquired functions of a conserved protein insertion machinery J. Biol. Chem. 280 2005 13004-13011
179. S. Puig D.J. Thiele Molecular mechanisms of copper uptake and distribution Curr. Opin. Chem. Biol. 6 2002 171-180
180. C. Pungartnik M.F. Kern M. Brendel J.A. Henriques Mutant allele pso7-1, that sensitizes Saccharomyces cerevisiae to photoactivated psoralen, is allelic with COX11, encoding a protein indispensable for a functional cytochrome c oxidase Curr. Genet. 36 1999 124-129
181. C. Pungartnik J. Picada M. Brendel J.A. Henriques Further phenotypic characterization of pso mutants of Saccharomyces cerevisiae with respect to DNA repair and response to oxidative stress Genet. Mol. Res. 1 2002 79-89
182. F.A. Punter D.M. Glerum Mutagenesis reveals a specific role for Cox17p in copper transport to cytochrome oxidase J. Biol. Chem. 278 2003 30875-30880
183. A. Puustinen M. Wikstrom The heme groups of cytochrome o from Escherichia coli. Proc. Natl. Acad. Sci. USA 88 1991 6122-6126
184. T.D. Rae P.J. Schmidt R.A. Pufahl V.C. Culotta T.V. O'Halloran Undetectable intracellular free copper: The requirement of a copper chaperone for superoxide dismutase Science 284 1999 805-808
185. S. Rahman J.W. Taanman J.M. Cooper I. Nelson I. Hargreaves B. Meunier M.G. Hanna J.J. Garcia R.A. Capaldi B.D. Lake J.V. Leonard A.H. Schapira A missense mutation of cytochrome oxidase subunit II causes defective assembly and myopathy Am. J. Hum. Genet. 65 1999 1030-1039
186. B.E. Ramirez B.G. Malmstrom J.R. Winkler H.B. Gray The currents of life: the terminal electron-transfer complex of respiration Proc. Natl. Acad. Sci. USA 92 1995 11949-11951
187. A. Rentzsch G. Krummeck-Weiss A. Hofer A. Bartuschka K. Ostermann G. Rödel Mitochondrial copper metabolism in yeast: Mutational analysis of Sco1p involved in the biogenesis of cytochrome c oxidase Curr. Genet. 35 1999 103-108
188. P.R. Rich S. Junemann B. Meunier Protonmotive mechanism of heme-copper oxidases J. Bioenerg. Biomembr. 30 1998 131-138
189. N.C. Robinson Functional binding of cardiolipin to cytochrome c oxidase J. Bioenerg. Biomembr. 25 1993 153-163
190. B.A. Rothermel J.L. Thornton R.A. Butow Rtg3p, a basic helix-loop-helix/ leucine zipper protein that functions in motochondrial-induced changes in gene expression, contains independent activation domains J. Biol. Chem. 272 1997 19801-19807
191. K. Saiki T. Mogi K. Ogura Y. Anraku In vitro heme O synthesis by the cyoE gene product from Escherichia coli J. Biol. Chem. 268 1993 26041-26044
192. A. Sali Functional links between proteins Nature 402 1999 25-26
193. S.A. Saracco T.D. Fox Cox18p is required for export of the mitochondrially encoded Saccharomyces cerevisiae Cox2p C-tail and interacts with Pnt1p and Mss2p in the inner membrane Mol. Biol. Cell 13 2002 1122-1131
194. C. Saveanu M. Fromont-Racine A. Harington F. Ricard A. Namane A. Jacquier Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues J. Biol. Chem. 276 2001 15861-15867
195. R.C. Scarpulla Transcriptional activators and coactivators in the nuclear control of mitochondrial function in mammalian cells Gene 286 2002 81-89
196. H. Schägger Respiratory chain supercomplexes IUBMB Life 52 2001 119-128
197. M. Schulze G. Rödel SCO1, a yeast nuclear gene essential for accumulation of mitochondrial cytochrome c oxidase subunit II Mol. Gen. Genet. 211 1988 492-498
198. M. Schulze G. Rödel Accumulation of the cytochrome c oxidase subunits I and II in yeast requires a mitochondrial membrane-associated protein, encoded by the nuclear SCO1 gene Mol. Gen. Genet. 216 1989 37-43
199. T. Sekito Z. Liu J. Thornton R.A. Butow RTG-dependent mitochondria-to-nucleus signaling is regulated by MKS1 and is linked to the formation of the yeast prion Mol. Biol. Cell 13 2002 795-804
200. J.P. Shapleigh J.P. Hosler M.M. Tecklenburg Y. Kim G.T. Babcock R.B. Gennis S. Ferguson-Miller Definition of the catalytic site of cytochrome c oxidase: Specific ligands of heme a and the heme a3-CuB center Proc. Natl. Acad. Sci. USA 89 1992 4786-47890
201. A. Sickmann J. Reinders Y. Wagner C. Joppich R. Zahedi H.E. Meyer B. Schonfisch I. Perschil A. Chacinska B. Guiard P. Rehling N. Pfanner C. Meisinger The proteome of Saccharomyces cerevisiae mitochondria Proc. Natl. Acad. Sci. USA 100 2003 13207-13212
202. M. Siep K. van Oosterum H. Neufeglise H. van der Spek L.A. Grivell Mss51p, a putative translational activator of cytochrome c oxidase subunit-1 (COX1) mRNA, is required for synthesis of Cox1p in Saccharomyces cerevisiae Curr. Genet. 37 2000 213-220
203. C. Sirrenberg M.F. Bauer B. Guiard W. Neupert M. Brunner Import of carrier proteins into the mitochondrial inner membrane mediated by Tim22 Nature 384 1996 582-585
204. D. Smith J. Gray L. Mitchell W.E. Antholine J.P. Hosler Assembly of cytochrome c oxidase in the absence of the assembly protein surf1p leads to loss of the active site heme J. Biol. Chem. 280 2005 17652-17656
205. T. Soulimane G. Buse G.P. Bourenkov H.D. Bartunik R. Huber M.E. Than Structure and mechanism of the aberrant ba(3)-cytochrome c oxidase from Thermus thermophilus EMBO J. 19 2000 1766-1776
206. H. Speno M.R. Taheri D. Sieburth C.T. Martin Identification of essential amino acids within the proposed CuA binding site in subunit II of cytochrome c oxidase J. Biol. Chem. 270 1995 25363-25369
207. C. Srinivasan M.C. Posewitz G.N. George D.R. Winge Characterization of the copper chaperone Cox17 of Saccharomyces cerevisiae Biochemistry 37 1998 7572-7577
208. A. Stroh O. Anderka K. Pfeiffer T. Yagi M. Finel B. Ludwig H. Schägger ssembly of respiratory complexes I, III, and IV into NADH oxidase supercomplex stabilizes complex I in Paracoccus denitrificans J. Biol. Chem. 279 2004 5000-5007
209. R.A. Stuart W. Neupert Topogenesis of inner membrane proteins of mitochondria Trends Biochem. Sci. 21 1996 261-267
210. R. Stuart Insertion of proteins into the inner membrane of mitochondria: the role of the Oxa1 complex Biochim. Biophys. Acta 1592 2002 79-87
211. L.A. Sturtz K. Diekert L.T. Jensen R. Lill V.C. Culotta A fraction of yeast Cu,Zn-superoxide dismutase and its metallochaperone, CCS, localize to the intermembrane space of mitochondria. A physiological role for SOD1 in guarding against mitochondrial oxidative damage J. Biol. Chem. 276 2001 38084-38089
212. C.K. Suzuki K. Suda N. Wang G. Schatz Requirement of the yeast gene LON in intramitochondrial proteolysis and maintenance of respiration Science 264 1994 273-276
213. G. Szyrach M. Ott N. Bonnefoy W. Neupert J.M. Herrmann Ribosome binding to the Oxa1 complex facilitates co-translational protein insertion in mitochondria EMBO J. 22 2003 6448-6457
214. J.W. Taanman R.A. Capaldi 1993. Subunit VIa of yeast cytochrome c oxidase is not necessary for assembly of the enzyme complex but modulates the enzyme activity. Isolation and characterization of the nuclear-coded gene. J. Biol. Chem. 268 1875 4-18761
215. J.J. Tate K.H. Cox R. Rai T.G. Cooper Mks1p is required for negative regulation of retrograde gene expression in Saccharomyces cerevisiae but does not affect nitrogen catabolite repression-sensitive gene expression J. Biol. Chem. 277 2002 20477-20482
216. N. Terziyska T. Lutz C. Kozany D. Mokranjac N. Mesecke W. Neupert J.M. Herrmann K. Hell Mia40, a novel factor for protein import into the intermembrane space of mitochondria is able to bind metal ions FEBS Lett. 579 2005 179-184
217. A.H.Y. Tong G. Lesage G.D. Bader H. Ding H. Xu X. Xin J. Young G.F. Berriz R.L. Brost M. Chang Y.Q. Chen X. Cheng G. Chua H. Friesen D.S. Goldberg J. Haynes C. Humphries G. He S. Hussein L. Ke N. Krogan Z. Li J.N. Levinson H. Lu P. Menard C. Munyana A.B. Parsons O. Ryan R. Tonikian T. Roberts A.M. Sdicu J. Shapiro B. Sheikh B. Suter S.L. Wong L.V. Zhang H. Zhu C.G. Burd S. Munro C. Sander J. Rine J. Greenblatt M. Peter A. Bretscher G. Bell F.P. Roth G.W. Brown A. Andrews H. Bussey C. Boone Global mapping of the yeast genetic interaction network Science 303 2004 808-813
218. A. Traven J.M. Wong D. Xu M. Sopta C.J. Ingles Interorganellar communication. Altered nuclear gene expression profiles in a yeast mitochondrial DNA mutant J. Biol. Chem. 276 2001 4020-4027
219. B.L. Trumpower R.B. Gennis Energy transduction by cytochrome complexes in mitochondrial and bacterial respiration: The enzymology of coupling electron transfer reactions to transmembrane proton translocation Annu. Rev. Biochem. 63 1994 675-716
220. T. Tsukihara H. Aoyama E. Yamashita T. Tomizaki H. Yamaguchi K. Shinzawa-Itoh R. Nakashima R. Yaono S. Yoshikawa Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 Å Science 269 1995 1069-1074
221. T. Tsukihara H. Aoyama E. Yamashita T. Tomizaki H. Yamaguchi K. Shinzawa-Itoh R. Nakashima R. Yaono S. Yoshikawa The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å Science 272 1996 1136-1144
222. T. Tsukihara K. Shimokata Y. Katayama H. Shimada K. Muramoto H. Aoyama M. Mochizuki K. Shinzawa-Itoh E. Yamashita M. Yao Y. Ishimura S. Yoshikawa The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process Proc. Natl. Acad. Sci. USA 100 2003 15304-15309
223. A. Tzagoloff N. Capitanio M.P. Nobrega D. Gatti Cytochrome oxidase assembly in yeast requires the product of COX11, a homolog of the P. denitrificans protein encoded by ORF3 EMBO J. 9 1990 2759-2764
224. A. Tzagoloff M. Nobrega N. Gorman P. Sinclair On the functions of the yeast COX10 and COX11 gene products Biochem. Mol. Biol. Int. 31 1993 593-598
225. I. Valnot S. Osmond N. Gigarel B. Mehaye J. Amiel V. Cormier-Daire A. Munnich J.P. Bonnefont P. Rustin A. Rötig Mutations of the SCO1 gene in mitochondrial cytochrome c oxidase deficiency with neonatal-onset hepatic failure and encephalopathy Am. J. Hum. Genet. 67 2000 1104-1109
226. L. van Dyck D.A. Pearce F. Sherman PIM1 encodes a mitochondrial ATP-dependent protease that is required for mitochondrial function in the yeast Saccharomyces cerevisiae J. Biol. Chem. 269 1994 238-242
227. C.Y. Wang J.D. Shi P. Yang P.G. Kumar Q.Z. Li Q.G. Run Y.C. Su H.S. Scott K.J. Kao J.X. She Molecular cloning and characterization of a novel gene family of four ancient conserved domain proteins (ACDP) Gene 306 2003 37-44
228. M. Wikstrom J.E. Morgan M.I. Verkhovsky On the mechanism of proton translocation by respiratory enzyme J. Bioenerg. Biomembr. 30 1998 139-145
229. P.A. Williams N.J. Blackburn D. Sanders H. Bellamy E.A. Stura J.A. Fee D.E. McRee The CuA domain of Thermus thermophilus ba3-type cytochrome c oxidase at 1.6 Å resolution Nat. Struct. Biol. 6 1999 509-516
230. S.L. Williams I. Valnot P. Rustin J.W. Taanman Cytochrome c oxidase subassemblies in fibroblast cultures from patients carrying mutations in COX10, SCO1, or SURF1 J. Biol. Chem. 279 2004 7462-7469
231. J.C. Williams C. Sue G.S. Banting H. Yang D.M. Glerum W.A. Hendrickson E.A. Schon Crystal structure of human SCO1: Implications for redox signaling by a mitochondrial cytochrome c oxidase 'assembly' protein J. Biol. Chem. 280 2005 15202-15211
232. H. Witt A. Wittershagen E. Bill B.O. Kolbesen B. Ludwig Asp-193 and Glu-218 of subunit II are involved in the Mn2+-binding of Paracoccus denitrificans cytochrome c oxidase FEBS Lett. 409 1997 128-130
233. Z. Wu P. Puigserver U. Andersson C. Zhang G. Adelmant V. Mootha A. Troy S. Cinti B. Lowell R.C. Scarpulla B.M. Spiegelman Mechanisms controlling mitochondrial biogenesis and function through the thermogenic coactivator PGC-1 Cell 98 1999 115-124
234. M. Yang L.T. Jensen A.J. Gardner V.C. Culotta Manganese toxicity and Saccharomyces cerevisiae Mam3p, a member of the ACDP (ancient conserved domain protein) family Biochem. J. 386 2005 479-487
235. Q. Ye I. Imriskova-Sosova B.C. Hill Z. Jia Identification of a disulfide Switch in BsSco, a member of the Sco family of cytochrome c oxidase assembly proteins Biochemistry 44 2005 5560
236. S. Yoshikawa K. Shinzawa-Itoh T. Tsukihara Crystal structure of bovine heart cytochrome c oxidase at 2.8 Å resolution J. Bioenerg. Biomembr. 30 1998 7-14
237. M. Zhang E. Mileykovskaya W. Dowhan Gluing the respiratory chain together. Cardiolipin is required for supercomplex formation in the inner mitochondrial membrane J. Biol. Chem. 277 2002 43553-43556
238. Y. Zhang E.R. Lyver S.A. Knight E. Lesuisse A. Dancis Frataxin and mitochondrial carrier proteins, Mrs3p and Mrs4p, cooperate in providing iron for heme synthesis J. Biol. Chem. 2005 March 14
239. X. Zhao N. Yeung Z. Wang Z. Guo Y. Lu Effects of metal ions in the CuB center on the redox properties of heme in heme-copper oxidases: spectroelectrochemical studies of an engineered heme-copper center in myoglobin Biochemistry 44 2005 1210-1214
240. Y. Zhen C.W. Hoganson G.T. Babcock S. Ferguson-Miller Definition of the interaction domain for cytochrome c on cytochrome c oxidase. I. Biochemical, spectral, and kinetic characterization of surface mutants in subunit II of Rhodobacter sphaeroides cytochrome aa(3) J. Biol. Chem. 274 1999 38032-38041
241. V. Zickermann A. Wittershagen B.O. Kolbesen B. Ludwig Transformation of the CuA redox site in cytochrome c oxidase into a mononuclear copper center Biochemistry 36 1997 3232-3236
242. Q. Zhong J. Gvozdenovic-Jeremic P. Webster J. Zhou M.L. Greenberg Loss of function of KRE5 suppresses temperature sensitivity of mutants lacking mitochondrial anionic lipids Mol. Biol. Cell 16 2005 665-675
243. Z. Zhu J. Yao T. Johns K. Fu I. De Bie C. Macmillan A.P. Cuthbert R.F. Newbold J. Wang M. Chevrette G.K. Brown R.M. Brown E.A. Shoubridge SURF1, encoding a factor involved in the biogenesis of cytochrome c oxidase, is mutated in Leigh syndrome Nat. Genet. 20 1998 337-343