Heme/copper terminal oxidases

Chemical Reviews

Volumn 96, Issue 7, 1996, Pages 2889-2907

  Ferguson Miller, Shelagh ^a   Babcock, Gerald T ^b  

^a Michigan State University   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000021902     PISSN: 00092665     EISSN: None     Source Type: Journal    
DOI: 10.1021/cr950051s     Document Type: Article

References (123)

1. Minireview Series, Cytochrome Oxidase; Ferguson-Miller, S., Ed. J. Bioenerg. Biomembr. 1993, 25, 69-188.
2. Wikström, M.; Krab, K.; Saraste, M. Cytochrome Oxidase - A Synthesis; Academic Press: New York, 1981.
3. Babcock, G. T.; Wikström, M. Nature 1992, 356, 301-309.
4. Malmström, B. G. Acc. Chem. Res. 1993, 26, 332-338.
5. Einarsdottir, O. Biochim. Biophys. Acta 1995, 1229, 129-147.
6. Kitagawa, T.; Ogura, T. Prog. Inorg. Chem., in press.
7. Weindruch, R. Sci. Am. 1996, January, 46-52.
8. Wikström, M. Nature 1977, 266, 271-273.
9. Keilin, D. Proc. R. Soc. London, Ser. B 1925, 98, 312.
10. Iwata, S.; Ostermeier, C.; Ludwig, B.; Michel, H. Nature 1995, 376, 660-669.
11. Tsukihara, T.; Aoyama, H.; Yamashita, E.; Tomizaki, T.; Yamaguchi, H.; Shinzawa-Itoh, K.; Nakashima, R.; Yaono, R.; Yoshikawa, S. Science 1995, 269, 1069-1074.
12. Tsukihara, T.; Aoyama, H.; Yamashita, E.; Tomizaki, T.; Yamaguchi, H.; Shinzawa-Itoh, K.; Nakashima, R.; Yaono, R.; Yoshikawa, S. Science 1996, 272, 1136-1144.
13. Wilmanns, M.; Lappalainen, P.; Kelly, M.; Sauer-Eriksson, E.; Saraste, M. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 11955-11959.
14. Calhoun, M. W.; Thomas, J. W.; Hill, J. J.; Hosler, J. P.; Shapleigh, J. P.; Tecklenburg, M. M. J.; Ferguson-Miller, S.; Babcock, G. T.; Alben, J. O.; Gennis, R. B. Biochemistry 1993, 32, 10905-10911.
15. Hosler, J. P.; Ferguson-Miller, S.; Calhoun, M. W.; Thomas, J. W.; Hill, J.; Lemieux, L.; Ma, J.; Georgiou, C.; Fetter, J.; Shapleigh, J. P.; Tecklenburg, M. M. J.; Babcock, G. T.; Gennis, R. B. J. Bioenerg. Biomembr. 1993, 25, 121-136.
16. Thomas, J. W.; Puustinen, A.; Alben, J. O.; Gennis, R. B.; Wikström, M. Biochemistry 1993, 32, 10923-10928.
17. Fetter, J. R.; Qian, J.; Shapleigh, J.; Thomas, J. W.; García-Horsman, J. A.; Schmidt, E.; Hosler, J.; Babcock, G. T.; Gennis, R. B.; Ferguson-Miller, S. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 1604-1608.
18. García-Horsman, J. A.; Puustinen, A.; Gennis, R. B.; Wikström, M. Biochemistry 1995, 34, 4428-4433.
19. Woodruff, W. H. J. Bioenerg. Biomembr. 1993, 25, 177-188.
20. Rousseau, D. L.; Ching, Y.-C.; Wang, J. J. Bioenerg. Biomembr. 1993, 25, 165-176.
21. Mitchell, D. M.; Ädelroth, P.; Hosler, J. P.; Fetter, J. R.; Brzezinski, P.; Pressler, M. A.; Aasa, R.; Malmström, B. G.; Alben, J. O.; Babcock, G. T.; Gennis, R. B.; Ferguson-Miller, S. Biochemistry 1996, 35, 824-828.
22. Ramirez, B. E.; Malmström, B. G.; Winkler, J. R.; Gray, H. B. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 11949-11951.
23. Hill, B. C. J. Biol. Chem. 1991, 266, 2219-2226.
24. Pan, L. P.; Hibdon, S.; Liu, R.-Q.; Durham, B.; Millett, F. Biochemistry 1993, 32, 8492-8498.
25. Brzezinski, P. Biochemistry 1996, 35, 5611-5615.
26. Moser, C. C.; Keske, J. M.; Warncke, K.; Farid, R. S.; Dutton, P. L. Nature 1992, 355, 796-802.
27. Zickermann, V.; Verkhovsky, M.; Morgan, J.; Wikström, M.; Anemuller, S.; Bill, E.; Steffens, G.; Ludwig, B. Eur. J. Biochem 1995, 234, 686-693.
28. Zhen, Y. J.; Fetter, J.; Ferguson-Miller, S. Biophys. J. 1996, 70, A353.
29. Gelles, J.; Blair, D. F.; Chan, S. I. Biochim. Biophys. Acta 1987, 853, 205-236.
30. Hosler, J. P.; Shapleigh, J. P.; Tecklenburg, M. M. J.; Thomas, J. W.; Kim, Y.; Espe, M.; Fetter, J.; Babcock, G. T.; Alben, J. O.; Gennis, R. B.; Ferguson-Miller, S. Biochemistry 1994, 33, 1194-1201.
31. Hosler, J. P.; Espe, M. P.; Zhen, Y.; Babcock, G. T.; Ferguson-Miller, S. Biochemistry 1995, 34, 7586-7592.
32. Verkhovskaya, M.; Verkhovsky, M.; Wikström, M. J. Biol. Chem. 1992, 267, 14559-14562.
33. Fetter, J. R.; Sharpe, M.; Qian, J.; Mills, D.; Ferguson-Miller, S.; Nicholls, P. FEBS Lett., in press.
34. Geren, L. M.; Beasley, J. R.; Fine, B. R.; Saunders, A. J.; Hibdon, S.; Pielak, G. J.; Durham, B.; Millett, F. J. Biol. Chem. 1995, 270, 2466-2662.
35. Roberts, V. A.; Freeman, H. C.; Olson, A. J.; Tainer, J. A.; Getzoff, E. D. J. Biol. Chem. 1991, 266, 13431-13441.
36. Ferguson-Miller, S.; Brautigan, D. L.; Margoliash, E. J. Biol. Chem. 1978, 253, 149-159.
37. Pelletier, H.; Kraut, J. Science 1992, 258, 1748-1755.
38. Miller, M. A.; Geren, L.; Han, G. W.; Saunders, A.; Beasley, J.; Pielak, G. J.; Durham, B.; Millett, F.; Kraut, J. Biochemistry 1996, 35, 667 -673.
39. Wang, Y.; Margoliash, E. Biochemistry 1995, 34, 1948-1958.
40. Wikström, M.; Bogachev, A.; Finel, M.; Morgan, J. E.; Puustinen, A.; Raitio, M.; Verkhovskaya, M. L.; Verkhovsky, M. I. Biochim. Biophys. Acta 1994, 1187, 106-111.
41. Rich, P. R. Aust. J. Plant Physiol. 1995, 22, 479-484.
42. Thomas, J. W.; Lemieux, L. J.; Alben, J. O.; Gennis, R. B. Biochemistry 1993, 32, 11173-11180.
43. Hosler, J. P.; Shapleigh, J. P.; Mitchell, D. M.; Kim, Y.; Pressler, M. A.; Georgiou, C.; Babcock, G. T.; Alben, J. O.; Ferguson-Miller, S.; Gennis, R. B. Biochemistry, in press.
44. Kadenbach, B.; Shroh, A.; Hüther, F.-J.; Reimann, A.; Steverding, D. J. Bioenerg. Biomembr. 1991, 23, 321-334.
45. Frank, V.; Kadenbach, B. FEBS Lett. 1996, 382, 121 -124.
46. Suarez, M. D.; Revzin, A.; Narlock, R.; Kempner, E. S.; Thompson, D. A.; Ferguson-Miller, S. J. Biol. Chem. 1984, 259, 13791-13799.
47. Watanabe, Y.; Groves, J. T. The Enzymes; Sigman, S., Ed.; Academic: San Diego, 1992; pp 405-452.
48. Babcock, G. T.; Floris, R.; Nilsson, T.; Pressler, M.; Varotsis, C.; Vollenbroek, E. Inorg. Chim. Acta 1996, 243, 345-353.
49. Lee, S.-K.; Fox, B. G.; Froland, W. A.; Lipscomb, J. D.; Münck, E. J. Am. Chem. Soc. 1993, 115, 6450-6451.
50. Liu, K. E.; Valentine, A. M.; Wang. D.; Huynh, B. H.; Edmondson, D. E.; Salioglu, A.; Lippard, S. J. J. Am. Chem. Soc. 1995, 117, 10174-10185.
51. Edmondson, D. E.; Huynh, B. H. Inorg. Chim. Acta, in press.
52. Liu, Y.; Nesheim, J. C.; Lee, S.-K.; Lipscomb, J. D. J. Biol. Chem. 1995, 270, 24662-24665.
53. Babcock, G. T. In Proceedings of Stable Isotope Applications in Biomolecular Structure and Mechanisms; Trewhilla, J., Cross, T. A., Unkefer, C. J., Eds.; Los Alamos National Laboratory Reports, LA-12893-C, 1994; pp 15-26.
54. Wikström, M. Nature 1989, 338, 776-778.
55. Babcock, G. T.; Varotsis, C. Proc. SPIE-Int. Soc. Opt. Eng. Biomol. Spectrosc. (III), 1993, 1890, 104-113.
56. Rétey, J. Angew. Chem., Int. Ed. Engl. 1990, 29, 355-361.
57. Gibson, Q.; Greenwood, C. Biochem. J. 1963, 86, 541-554.
58. Greenwood, C.; Gibson, Q. H. J. Biol. Chem. 1967, 242, 1782-1787.
59. Alben, J. O.; Moh, P. P.; Fiamingo, F. G.; Altschuld, R. A. Proc. Natl. Acad. Sci. U.S.A. 1981, 78, 234-237.
60. Fiamingo, F. G.; Altschuld, R. A.; Moh, P. P.; Alben, J. O. J. Biol. Chem. 1982, 257, 1639-1650.
61. Blackmore, R. S.; Greenwood, C.; Gibson, Q. H. J. Biol. Chem. 1991, 266, 19245-19249.
62. Dyer, R. B.; Einarsdóttir, Ó.; Killough, P. M.; López-Garriga, J. J.; Woodruff, W. H. J. Am. Chem. Soc. 1989, 111, 7657-7659.
63. Woodruff, W. H.; Einarsdóttir, O.; Dyer, R. B.; Bagley, K. A.; Palmer, G.; Atherton, S. J.; Goldbeck, R. A.; Dawes, T. D.; Kliger, D. S. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 2588-2592.
64. Einarsdóttir, Ó.; Dyer, R. B.; Lemon, D. D.; Killough, P. M.; Hubig, S. M.; Atherton, S. J.; López-Garriga, J. J.; Palmer, G.; Woodruff, W. H. Biochemistry 1993, 32, 12013-12024.
65. Lemon, D. D.; Calhoun, M. W.; Gennis, R. B.; Woodruff, W. H. Biochemistry 1993, 32, 11953-11956.
66. Chance, B.; Saronio, C.; Leigh, J. S., Jr. J. Biol. Chem. 1975, 150, 9226-9237.
67. Clore, M. G.; Andréasson, L.-E.; Karlsson, B. G.; Aasa, R.; Malmström, B. Biochem. J. 1980, 185, 139-154.
68. Hill, B. C.; Greenwood, C. Biochem. J. 1984, 218, 913-921.
69. Hill, B. C.; Greenwood, C.; Nicholls, P. Biochim. Biophys. Acta 1986, 853, 91-113.
70. Babcock, G. T.; Jean, J. M.; Johnston, L. N.; Palmer, G.; Woodruff, W. H. J. Am. Chem. Soc. 1984, 106, 8305-8306.
71. Varotsis, C.; Woodruff, W. H.; Babcock, G. T. J. Am. Chem. Soc. 1989, 111, 6439-6440; 112, 1297.
72. Varotsis, C.; Woodruff, W. H.; Babcock, G. T. J. Am. Chem. Soc. 1989, 111, 6439-6440; 112, 1297.
73. Han, S.; Ching, Y.-C.; Rousseau, D. L. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 2491-2495.
74. Ogura, T.; Takahashi, S.; Shinzawa-Itoh, K.; Yoshikawa, S.; Kitagawa, T. J. Am. Chem. Soc. 1990, 112, 5630-5631.
75. Varotsis, C.; Zhang, Y.; Appelman, E. H.; Babcock, G. T. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 237-241.
76. Oertling, W. A.; Kean, R. T.; Wever, R.; Babcock, G. T. Inorg. Chem. 1990, 29, 2633-2645.
77. Varotsis, C.; Woodruff, W. H.; Babcock, G. T. J. Biol. Chem. 1990, 265, 11131-11136.
78. Han, S.; Ching, Y.-C.; Rousseau, D. L. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 8408-8412.
79. Varotsis, C.; Babcock, G. T. Biochemistry 1990, 29, 7357-7362.
80. Oliveberg, M.; Brzezinski, P.; Malmström, B. G. Biochim Biophys. Acta 1989, 977, 322-328.
81. Verkhovsky, M. I.; Morgan, J. E.; Wikström, M. Biochemistry 1994, 33, 3079-3086.
82. Bickar, D.; Bonaventura, J.; Bonaventura, C. Biochemistry 1982, 24, 2661-2666.
83. Konstantinov, A. A.; Capitanio, N.; Uygodina, T. V.; Papa, S. FEBS Lett. 1992, 312, 71-74.
84. Fabian, M.; Palmer, G. Biochemistry 1995, 34, 13802-13810.
85. Wikström, M. Proc. Natl. Acad. Sci. U.S.A. 1981, 78, 4051-4054.
86. Wikström, M.; Morgan, J. E. J. Biol. Chem. 1992, 267, 10266-10273.
87. Oliveberg, M.; Hallén, S.; Nilsson, T. Biochemistry 1991, 30, 436-440.
88. Hallén, S.; Nilsson, T. Biochemistry 1992, 31, 11853-11859.
89. Mitchell, R.; Rich, P. R. Biochim. Biophys. Acta 1994, 1186, 19-26.
90. Rich, P. R.; Moody, A. J. In Bioelectrochemistry: Principles and Practice; Graber, P., Ed.; Elsevier: Amsterdam, in press.
91. Varotsis, C. A.; Babcock, G. T. J. Am. Chem. Soc. 1995, 117, 11260-11269.
92. Hill, B. C. J. Biol. Chem. 1994, 269, 2419-2425.
93. Oliveberg, M.; Malmström, B. G. Biochemistry 1992, 31, 3560-3563.
94. Blair, D. F.; Witt, S. N.; Chan, S. I. J. Am. Chem. Soc. 1985, 107, 7389-7399.
95. Ogura, T.; Takahashi, S.; Shinzawa-Itoh, K.; Yoshikawa, S.; Kitagawa, T. Bull. Chem. Soc. Jpn. 1991, 64, 2901-2907.
96. Ogura, T.; Takahashi, S.; Hirota, S.; Shinzawa-Itoh, K.; Yoshikawa, S.; Appelman, E. H.; Kitagawa, T. J. Am. Chem. Soc. 1993, 115, 8527-8536.
97. Ogura, T.; Hirota, S.; Shinzawa-Itoh, K.; Yoshikawa, S.; Kitagawa, T. J. Am. Chem. Soc. 1996, 118, 5443-5449.
98. Proshlyakov, D. A.; Ogura, T.; Shinzawa-Itoh, K.; Yoshikawa, S.; Kitagawa, T. Biochemistry 1996, 35, 76-82.
99. Proshlyakov, D. A.; Ogura, T.; Shinzawa-Itoh, K.; Yoshikawa, S.; Kitagawa, T. Biochemistry 1996, 35, 8580-8586.
100. Han, S.; Ching, Y.; Rousseau, D. L. Nature 1990, 348, 89-90.
101. Han, S.; Ching, Y.; Rousseau, D. L. J. Biol. Chem. 1989, 264, 6604-6607.
102. Ogura, T.; Takahashi, S.; Shinzawa-Itoh, K.; Yoshikawa, S.; Kitagawa, T. J. Biol. Chem. 1990, 265, 14721-14723.
103. Han, S.; Ching, Y.; Rousseau, D. L. J. Am. Chem. Soc. 1990, 112, 9445-9451.
104. Takahashi, S.; Ching, Y.; Wan, J.; Rousseau, D. L. J. Biol. Chem. 1995, 270, 8405-8407.
105. Proshlyakov, D. A.; Ogura, T.; Shinzawa-Itoh, K.; Yoshikawa, S.; Appelman, E. H.; Kitagawa, T. J. Biol. Chem. 1994, 269, 29385-29388.
106. Wikström, M.; Morgan, J. E. J. Biol. Chem. 1992, 267, 10266-10273.
107. Watmough, N. J.; Cheesman, M. R.; Greenwood, C.; Thomson, A. J. Biochem. J. 1994, 300, 469-475.
108. Weng, L.; Baker, G. M. Biochemistry 1991, 30, 5727-5733.
109. Morgan, J. E.; Verkhovsky, M. I.; Puustinen, A.; Wikström, M. Biochemistry 1995, 34, 15633-15637.
110. Puustinen, A.; Verkhovsky, M. I.; Morgan, J. E.; Belevich, N. P.; Wikström, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 1545-1548.
111. Mitchell, R.; Mitchell, P.; Rich, P. R. Biochim. Biophys. Acta 1992, 1101, 188-191.
112. Musser, S. M.; Chan, S. I. Biophys. J. 1995, 68, 2543-2555.
113. Verkhovsky, M. I.; Morgan, J. E.; Wikström, M. Biochemistry 1995, 34, 7483-7491.
114. Hallén, S.; Brzezinski, P.; Malmström, B. G. Biochemistry 1994, 33, 1467-1472.
115. Ädelroth, P.; Brzezinski, P.; Malmström, B. G. Biochemistry 1995, 34, 2844-2849.
116. Riistama, S.; Puustinen, A.; Garcia-Horseman, A.; Iwata, S.; Michel, H.; Wikström, M. Biochim. Biophys. Acta 1996, 1275, 1-4.
117. Taanman, J.-W.; Turina, P.; Capaldi, R. Biochemistry 1994, 33, 11833-11841.
118. Verkhovsky, M. I.; Morgan, J.; Puustinen, A.; Wikström, M. Nature 1996, 380, 268-270.
119. Hirota, S.; Mogi, T.; Ogura, T.; Hirano, T.; Anraku, Y.; Kitagawa, T. FEBS Lett. 1994, 352, 67-70.
120. Fann, Y.; Ahmed, I.; Blackburn, N.; Boswell, J.; Verkhovskaya, M.; Hoffman, B.; Wikström, M. Biochemistry 1995, 34, 10245-10255.
121. Powers, L.; Chance, B.; Ching, Y.; Angiolillo, P. Biophys. J. 1981, 34, 465-498.
122. Scott, R. A.; Li, P. M.; Chan, S. I. Ann. N.Y. Acad. Sci. 1988, 550, 53-58.
123. It is useful to consider, briefly, some technical aspects of the way in which time-resolved Raman has been implemented by the groups involved. Both Kitagawa's group and Rousseau's use continuous-wave (cw) sources and achieve time resolution by displacing the CO photodissociating beam and the probe beam spatially along a flow tube. This approach has the advantage of using cw lasers, which provide high-quality Raman spectra, but the disadvantage that the time resolution may be blurred by laminar flow effects. Babcock's group uses two ns-pulsed lasers to achieve time resolution, which has the advantage of avoiding laminar flow issues and providing very accurate time resolution, but the disadvantage of the poorer beam quality of pulsed lasers, which leads to lower signal/noise ratios. Both Rousseau's and Babcock's group use a single pass through their spectrometer, whereas Kitagawa's group uses a recycling system that allows multiple passes of the enzyme through their detection system. While conserving enzyme, the latter approach introduces the possibility that full reduction of the protein is not achieved on each pass through the apparatus.