Structure/function of oxygen-regulated isoforms in cytochrome c oxidase

Journal of Experimental Biology

Volumn 201, Issue 8, 1998, Pages 1163-1175

  Burke, Patricia V ^a   Poyton, Robert O ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

Cytochrome c oxidase; Function; Gene expression; Isoforms; Oxygen; Respiration; Structure; Yeast

Indexed keywords

CYTOCHROME C OXIDASE; OXYGEN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; ISOMERISM; MOLECULAR GENETICS; PHYSIOLOGY; STRUCTURE ACTIVITY RELATION; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; ANIMALS; CRYSTALLOGRAPHY, X-RAY; ELECTRON TRANSPORT COMPLEX IV; HUMANS; ISOMERISM; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXYGEN; STRUCTURE-ACTIVITY RELATIONSHIP;

ANIMALIA; DICTYOSTELIUM DISCOIDEUM; EUKARYOTA; MAMMALIA; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0032052215     PISSN: 00220949     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (71)

1. ALLEN, L. A., ZHAO, X.-J., CAUGHEY, W. AND POYTON, R. O. (1995). Isoforms of yeast cytochrome c oxidase subunit V affect the binuclear reaction center and alter the kinetics of interaction with the isoforms of yeast cytochrome c. J. biol. Chem. 270, 110-118.
2. ANTHONY, G., REIMANN, A. AND KADENBACH, B. (1993). Tissue-specific regulation of bovine heart cytochrome c oxidase activity by ADP via interaction with subunit VIa. Proc. natn. Acad. Sci. U.S.A. 90, 1652-1656.
3. BABCOCK, G. T. AND WIKSTROM, M. (1992). Oxygen activation and the conservation of energy in cell respiration. Nature 356, 301-309.
4. BISSON, R. AND SCHIAVO, G. (1986). Two different forms of cytochrome c oxidase can be purified from the slime mold Dictyostelium discoidium. J. biol. Chem. 261, 4373-4376.
5. BISSON, R., VETTORE, S., ARATKI, E. AND SANDONNA, D. (1997). Subunit change in cytochrome c oxidase: identification of the oxygen switch in Dictyostelium. EMBO J. 16, 739-749.
6. BONNE, G., SEIBEL, P., POSSEKEL, S., MARSAC, C. AND KADENBACH, B. (1993). Expression of human cytochrome c oxidase subunits during fetal development. Eur. J. Biochem. 217, 1099-1107.
7. BRUNORI, M., ANTONINI, G., MALETESTA, F., SAKTI, P. AND WILSON, M. T. (1987). Cytochrome c oxidase - Subunit structure and proton pumping. Eur. J. Biochem. 169, 1-8.
8. BUNN, H. F. AND POYTON, R. O. (1996). Oxygen sensing and molecular adaptation to hypoxia. Physiol. Rev. 76, 839-885.
9. BURKE, P. V., RAITT, D. C., ALLEN, L. A., KELLOGG, E. A. AND POYTON, R. O. (1997). Effects of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast. J. biol. Chem. 272, 14705-14712.
10. CAPALDI, R. A., MARUSHICH, M. F. AND TAANMAN, J.-W. (1995). Mammalian cytochrome c oxidase: Characterization of enzyme and immunological detection of subunits in tissue extracts and whole cells. Meth. Enzymol. 260, 117-132.
11. CAUGHEY, W. S., DONG, A., SAMPATH, V., YOSHIKAWA, S. AND ZHAO, X. J. (1988). Probing heart cytochrome c oxidase structure and function by infrared spectroscopy. J. Bioenerg. Biomembr. 25, 81-91.
12. CHAN, S. I. AND LI, P. M. (1990). Cytochrome c oxidase: Understanding nature's design of a proton pump. Biochemistry 29, 1-12.
13. COPELAND, R. A. (1991). Conformational switching at cytochrome a during steady state turnover of cytochrome c oxidase. Proc. natn. Acad. Sci. U.S.A. 88, 7281-7283.
14. CUMSKY, M. G., KO, C., TRUEBLOOD, C. E. AND POYTON, R. O. (1985). Two non-identical forms of subunit V are functional in yeast cytochrome c oxidase. Proc. natn. Acad. Sci. U.S.A. 82, 2235-2239.
15. CUMSKY, M. G., TRUEBLOOD, C. E., KO, C. AND POYTON, R. O. (1987). Structural analysis of two genes encoding divergent forms of yeast cytochrome c oxidase subunit V. Molec. cell. Biol. 7, 3511-3519.
16. DODSON, E. D., ZHAO, X.-J., CAUGHEY, W. S. AND ELLIOTT, C. M. (1996). Redox dependent interactions of the metal sites in carbon-monoxide-bound cytochrome c oxidase monitored by infrared and UV/Visible spectroelectrochemical methods. Biochemistry 35, 444-452.
17. ERECINSKA, M. AND WILSON, D. F. (1982). Regulation of cellular energy metabolism. J. Membr. Biol. 70, 1-14.
18. FIAMINGO, F. G., ALTSCHULD, R. A. AND ALBEN, J. O. (1986). Alpha and beta forms of cytochrome c oxidase observed in rat heart myocytes by low temperature Fourier transform infrared spectroscopy. J. biol. Chem. 261, 12976-12987.
19. - stoichiometry of cytochrome c oxidase from bovine heart by intramitochondrial ATP/ADP ratios. FEBS Lett. 382, 121-124.
20. GIER, B., SCHAGGER, H., ORTWEIN, C., LINK, T. A., HAGEN, W. R., BRANDT, U. AND VON JAGOW, G. (1995). Kinetic properties and ligand binding of the eleven-subunit cytochrome c oxidase from Saccharomyces cerevisiae isolated with a novel large-scale purification method. Eur. J. Biochem. 227, 296-302.
21. HALLMAN, M. (1971). Changes in mitochondrial respiratory chain proteins during perinatal development. Evidence for the importance of environmental oxygen. Biochim. biophys. Acta 253, 360-372.
22. HALTIA, T., SARASTE, M. AND WIKSTROM, M. (1991). Subunit III of cytochrome c oxidase is not involved in proton translocation: a site-directed mutagenesis study. EMBO J. 10, 2015-2021.
23. HODGE, M., KIM, G., SINGH, K. AND CUMSKY, M. G. (1989). Inverse regulation of the yeast COX5 genes by oxygen and heme. Molec. cell. Biol. 9, 1958-1964.
24. IWATA, S., OSTERMEIER, C., LUDWIG, B. AND MICHEL, H. (1995). Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376, 660-669.
25. KADENBACH, B. (1986). Regulation of respiration and ATP synthesis in higher organisms: hypothesis. J. Bioenerg. Biomembr. 18, 39-54.
26. KADENBACH, B., HARTMAN, R., GLANVILLE, R. AND BUSE, G. (1982). Tissue-specific genes code for polypeptide VIa of bovine liver and heart cytochrome c oxidase. FEBS Lett. 138, 236-238.
27. KADENBACH, B. AND REINMANN, A. (1992). Cytochrome c oxidase: tissue-specific expression of isoforms and regulation of activity. In Molecular Mechanisms in Bioenergetics (ed. L. Ernster), pp. 241-263. Amsterdam: Elsevier Press.
28. KADENBACH, B., UNGIBAUER, M., JANAUSCH, J., BUGE, U. AND KUHN-NENTWIG, L. (1983). The complexity of respiratory complexes. Trends biochem. Sci. 8, 398-400.
29. KUHN-NENTWIG, L. AND KADENBACH, B. (1985). Isolation and properties of cytochrome c oxidase from rat liver and quantification of immunological differences between isozymes from various rat tissues with subunit-specific antisera. Eur. J. Biochem. 149, 147-158.
30. KWAST, K. E., BURKE, P. V. AND POYTON, R. O. (1998). Oxygen sensing and transcriptional regulation of oxygen-responsive genes in yeast. J. exp. Biol. 201, 1177-1195.
31. LIN, J., PAN, L. P. AND CHAN, S. I. (1993). The subunit location of magnesium in cytochrome c oxidase. J. biol. Chem. 268, 22210-22214.
32. LOMAX, M. AND GROSSMAN, L. I. (1989). Tissue-specific genes for respiratory proteins. Trends biochem. Sci. 14, 501-503.
33. MCEWEN, J. E., KO, C., KLOECKENER-GRUISSEM, B. AND POYTON, R. O. (1986). Nuclear functions required for cytochrome c oxidase biogenesis in Saccharomyces cerevisicie. J. biol. Chem. 261, 11872-11879.
34. MELA, L., GOODWIN, C. W. AND MILLER, L. D. (1975). Correlation of mitochondrial cytochrome content and activity to oxygen availability in the newborn. Biochem. biophys. Res. Commun. 64, 384-390.
35. MEUNIER, B. AND COLSON, A. M. (1994). Random deficiency mutations and reversions in cytochrome c oxidase subunits I, II and III of Saccharomyces cerevisiae. Biochim. biophys. Acta 1187, 112-115.
36. MEUNIER, B., COLSON, A. M. AND RICH, P. R. (1995). The topology of CuA in relation to other metal centers in cytochrome c oxidase of Saccharomyces cerevisiae as determined by analysis of second-site revertants. Biochim. biophys. Acta 1253, 13-15.
37. MITCHELL, D. M., SHAPLEIGH, J. P., ARCHER, A. M., ALBEN, J. O. AND GENNIS, R. B. (1996). A pH-dependent polarity change at the binuclear reaction center of reduced cytochrome c oxidase detected by FTIR difference spectroscopy of the CO adduct. Biochemistry 35, 9446-9450.
38. MOODY, A. J. (1996). 'As prepared' forms of fully oxidized haem/Cu terminal oxidases. Biochim. biophys. Acta 1276, 6-20.
39. PATTERSON, T. E., TRUEBLOOD, C. E., WRIGHT, R. M. AND POYTON, R. O. (1987). Polypeptide subunits encoded by nuclear genes are essential components of eukaryotic cytochrome c oxidase. In Cytochrome Systems: Molecular Biology and Bioenergetics (ed. S. Papa, B. Chance and L. Ernster), pp. 253-260. New York: Plenum Press.
40. PIOUS, D. (1979). Induction of cytochromes in human cells by oxygen. Proc. natn. Acad. Sci. U.S.A. 65, 1001-1008.
41. POWER, S. D., LOCHRIE, M. A., SEVARINO, K. A., PATTERSON, T. E. AND POYTON, R. O. (1984). The nuclear-coded subunits of yeast cytochrome c oxidase. I. Fractionation of the holoenzyme into chemically pure polypeptides and the identification of two new subunits using solvent extraction and reversed phase high performance liquid chromatography. J. biol. Chem. 259, 6564-6570.
42. POYTON, R. O. AND BURKE, P. V. (1992). Oxygen regulated transcription of cytochrome c and cytochrome c oxidase genes in yeast. Biochim. biophys. Acta 1101, 252-256.
43. POYTON, R. O., GOEHRING, B., DROSTE, M., SEVARINO, K. A., ALLEN, L. A. AND ZHAO, X.-J. (1995). Cytochrome c oxidase (Complex IV) from Saccharomyces cerevisiae. Meth. Enzymol. 260, 97-116.
44. POYTON, R. O. AND MCEWEN, J. E. (1996). Crosstalk between nuclear and mitochondrial genomes. A. Rev. Biochem. 65, 563-607.
45. POYTON, R. O., TRUEBLOOD, C. E., WRIGHT, R. M. AND FARRELL, L. E. (1988). Expression and function of cytochrome c oxidase isologues. Modulators of cellular energy production? Ann. N.Y. Acad. Sci. 550, 289-307.
46. RIISTAMA, S., PUUSTINEN, A., GARCAI-HORSMAN, A., IWATA, S., MICHEL, H. AND WIKSTROM, M. (1996). Channelling of dioxygen into a respiratory enzyme. Biochim. biophys. Acta 1275, 1-4.
47. ROBINSON, B. H. (1994). MtDNA and nuclear mutations affecting oxidative phosphorylation: correlating severity of clinical defect with extent of bioenergetic compromise. J. Bioenerg. Biomembr. 26, 311-317.
48. ROGERS, P. J. AND STEWART, P. R. (1973a). Mitochondrial and peroxisomal contributions to the energy metabolism of Saccharomyces cerevisiae in continuous culture. J. gen. Microbiol. 79, 205-217.
49. ROGERS, P. J. AND STEWART, P. R. (1973b). Respiratory development in Saccharomyces cerevisiae grown at controlled oxygen tension. J. Bacteriol. 115, 88-97.
50. ROHDICH, F. AND KADENBACH, B. (1993). Tissue-specific regulation of cytochrome c oxidase efficiency by nucleotides. Biochemistry 32, 8499-8503.
51. ROMERO, N., MARSAC, C., FARDEAU, M., DROSTE, M., SCHNEYDER, B. AND KADENBACH, B. (1990). Immunohistochemical demonstration of fiber-type specific isozymes of cytochrome c oxidase in human skeletal muscle. Histochemistry 94, 211-215.
52. SALI, A. AND BLUNDELL, T. L. (1993). Comparative protein modelling by satisfaction of spatial restraints. J. molec. Biol. 234, 779-815.
53. SANDONA, D., GASTALDELLO, S., RIZZUTO, R. AND BISSON, R. (1995). Expression of cytochrome c oxidase during growth and development of Dictyostelium. J. biol. Chem. 270, 5587-5593.
54. SARASTE, M. (1990). Structural features of cytochrome oxidase. Q. Rev. Biophys. 23, 331-66.
55. SHAPLEIGH, J. P., HILL, J. J., ALBEN, J. O. AND GENNIS, R. B. (1992). Spectroscopic and genetic evidence for two heme-Cu-containing oxidases in Rhodobacter sphaeroides. J. Bacteriol. 174, 2338-2343.
56. SHERMAN, D., KOTAKE, S., ISHIBE, N. AND COPELAND, R. A. (1991). Resolution of the electronic transitions of cytochrome c oxidase: evidence for two conformational states of ferrous cytochrome a. Proc. natn. Acad. Sci. U.S.A. 88, 4265-4269.
57. TAANMAN, J. W. AND CAPALDI, R. A. (1992). Purification of yeast cytochrome c oxidase with a subunit composition resembling the mammalian enzyme. J. biol. Chem. 267, 22481-22485.
58. TRUEBLOOD, C. E. AND POYTON, R. O. (1987). Differential effectiveness of yeast cytochrome c oxidase subunit V genes results from differences in expression not function. Molec. cell. Biol. 7, 3520-3526.
59. TRUEBLOOD, C. E., WRIGHT, R. M. AND POYTON, R. O. (1988). Differential regulation of the two genes encoding Saccharomyces cerevisiae cytochrome c oxidase subunit V by heme and the HAP2 and REO1 genes. Molec. cell. Biol. 8, 4537-4540.
60. TSUKIHARA, T., AOYAMA, H., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, H., SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R. AND YOSHIKAWA, S. (1995). Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2 Å. Science 269, 1069-1072.
61. TSUKIHARA, T., AOYAMA, H., YAMASHITA, E., TOMIZAKI, T., YAMAGUCHI, H., SHINZAWA-ITOH, K., NAKASHIMA, R., YAONO, R. AND YOSHIKAWA, S. (1996). The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2 Å. Science 272, 1136-1144.
62. VAN KUILENBURG, A., VAN BEEUMAN, J., DEMOL, H., VAN DEN BOGERT, C., SCHOUTEN, I. AND MUIJERS, A. O. (1992). Subunit IV of human cytochrome c oxidase, polymorphism and a putative isoform. Biochim. biophys. Acta 1119, 218-224.
63. VILLANI, G. AND ATTARDI, G. (1997). In vivo control of respiration by cytochrome c oxidase in wild-type and mitochondrial DNA mutation-carrying human cells. Proc. natn. Acad. Sci. U.S.A. 94, 1166-1171.
64. WALLACE, D. C. (1992). Mitochondrial genetics: a paradigm for aging and degenerative diseases? Science 256, 628-632.
65. 3-type cytochrome c oxidase form Rhodobacter sphaeroides. Biochemistry 34, 9819-9825.
66. WATERLAND, R. A., BASU, A., CHANCE, B. AND POYTON, R. O. (1991). The isoforms of yeast cytochrome c oxidase subunit V alter the in vivo kinetic properties of the holoenzyme. J. biol. Chem. 266, 4180-4186.
67. WIKSTROM, M., BOGACHEV, A., FINEL, M., MORGAN, J. E., PUUSTINEN, A., RAITIO, M., VERKHOVSKAYA, M. AND VERKHOVSKY, M. I. (1994). Mechanism of proton translocation by the respiratory oxidases. The histidine cycle. Biochim. biophys. Acta 1187, 106-111.
68. WILSON, D. F. (1982). Regulation of in vivo mitochondrial oxidative phsophorylation. In Membranes and Transport, vol. 1 (ed. A. Martinosi), pp. 349-355. New York: Plenum Press.
69. WILSON, J. E. (1972). The relationship between glycolytic and mitochondrial enzymes in the developing rat brain. J. Neurochem. 19, 223-227.
70. WITTUNG, P AND MALMSTROM, B. G. (1996). Redox-linked conformational changes in cytochrome c oxidase. FEBS Lett. 388, 47-49.
71. WOODRUFF, W. H. (1993). Coordination dynamics of heme-copper oxidases. The ligand shuttle and the control and coupling of electron transfer and proton translocation. J. Bioenerg. Biomembr. 25, 177-188.