메뉴 건너뛰기




Volumn 32, Issue 10, 2004, Pages 3028-3032

Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATE; DBPA PROTEIN; KETOXAL; RIBONUCLEASE; RIBONUCLEASE T1; RIBONUCLEASE T2; RIBONUCLEOPROTEIN; RNA 23S; RNA HELICASE; UNCLASSIFIED DRUG; ADENOSINE TRIPHOSPHATASE; BACTERIAL RNA; DBPA PROTEIN, E COLI; DEAD BOX PROTEIN; ESCHERICHIA COLI PROTEIN; RNA BINDING PROTEIN;

EID: 2942655346     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh640     Document Type: Article
Times cited : (29)

References (32)
  • 1
    • 0033133863 scopus 로고    scopus 로고
    • Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families
    • de la Cruz,J., Kressler,D. and Linder,P. (1999) Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem. Sci., 24, 192-198.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 192-198
    • de la Cruz, J.1    Kressler, D.2    Linder, P.3
  • 2
    • 0032489021 scopus 로고    scopus 로고
    • Mechanical devices of the spliceosome: Motors, clocks, springs and things
    • Staley,J.P. and Guthrie,C. (1998) Mechanical devices of the spliceosome: motors, clocks, springs and things. Cell, 92, 315-326.
    • (1998) Cell , vol.92 , pp. 315-326
    • Staley, J.P.1    Guthrie, C.2
  • 3
    • 0034857262 scopus 로고    scopus 로고
    • DExD/H box RNA helicases: From generic motors to specific dissociation functions
    • Tanner,N.K. and Linder,P. (2001) DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol. Cell, 8, 251-262.
    • (2001) Mol. Cell , vol.8 , pp. 251-262
    • Tanner, N.K.1    Linder, P.2
  • 4
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein,E., Caudy,A.A., Hammond,S.M. and Hannon,G.J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409, 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 5
    • 0026680746 scopus 로고
    • Mutational analysis of a DEAD box RNA helicase: The mammalian translation initiation factor eIF-4A
    • Pause,A. and Sonenberg,N. (1992) Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A. EMBO J., 11, 2643-2654.
    • (1992) EMBO J. , vol.11 , pp. 2643-2654
    • Pause, A.1    Sonenberg, N.2
  • 6
    • 0040142238 scopus 로고    scopus 로고
    • Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A
    • Rogers,G.W.,Jr, Richter,N.J. and Merrick,W.C. (1999) Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A. J. Biol. Chem., 274, 12236-12244.
    • (1999) J. Biol. Chem. , vol.274 , pp. 12236-12244
    • Rogers Jr., G.W.1    Richter, N.J.2    Merrick, W.C.3
  • 7
    • 0034719392 scopus 로고    scopus 로고
    • The DExH protein NPH-II is a processive and directional motor for unwinding RNA
    • Jankowsky,E., Gross,C.H., Shuman,S. and Pyle,A.M. (2000) The DExH protein NPH-II is a processive and directional motor for unwinding RNA. Nature, 403, 447-451.
    • (2000) Nature , vol.403 , pp. 447-451
    • Jankowsky, E.1    Gross, C.H.2    Shuman, S.3    Pyle, A.M.4
  • 8
    • 0035105921 scopus 로고    scopus 로고
    • Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor
    • Chen,J.Y., Stands,L., Staley,J.P., Jackups,R.R.,Jr, Latus,L.J. and Chang,T.H. (2001) Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor. Mol. Cell, 7, 227-232.
    • (2001) Mol. Cell , vol.7 , pp. 227-232
    • Chen, J.Y.1    Stands, L.2    Staley, J.P.3    Jackups Jr., R.R.4    Latus, L.J.5    Chang, T.H.6
  • 9
    • 0035177309 scopus 로고    scopus 로고
    • Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase
    • Kistler,A.L. and Guthrie,C. (2001) Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase. Genes Dev., 15, 42-49.
    • (2001) Genes Dev. , vol.15 , pp. 42-49
    • Kistler, A.L.1    Guthrie, C.2
  • 10
    • 0035808566 scopus 로고    scopus 로고
    • Active disruption of an RNA-protein interaction by a DExH/D RNA helicase
    • Jankowsky,E., Gross,C.H., Shuman,S. and Pyle,A.M. (2001) Active disruption of an RNA-protein interaction by a DExH/D RNA helicase. Science, 291, 121-125.
    • (2001) Science , vol.291 , pp. 121-125
    • Jankowsky, E.1    Gross, C.H.2    Shuman, S.3    Pyle, A.M.4
  • 12
    • 0141430073 scopus 로고    scopus 로고
    • DExD/H-box proteins and their partners: Helping RNA helicases unwind
    • Silverman,E., Edwalds-Gilbert,G. and Lin,R.J. (2003) DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene, 312, 1-16.
    • (2003) Gene , vol.312 , pp. 1-16
    • Silverman, E.1    Edwalds-Gilbert, G.2    Lin, R.J.3
  • 13
    • 0027301893 scopus 로고
    • DbpA: A DEAD box protein specifically activated by 23S rRNA
    • Fuller-Pace,F.V., Nicol,S.M., Reid,A.D. and Lane,D.P. (1993) DbpA: a DEAD box protein specifically activated by 23S rRNA. EMBO J., 12, 3619-3626.
    • (1993) EMBO J. , vol.12 , pp. 3619-3626
    • Fuller-Pace, F.V.1    Nicol, S.M.2    Reid, A.D.3    Lane, D.P.4
  • 14
    • 0032387820 scopus 로고    scopus 로고
    • Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA
    • Tsu,C.A. and Uhlenbeck,O.C. (1998) Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA. Biochemistry, 37, 16989-16996.
    • (1998) Biochemistry , vol.37 , pp. 16989-16996
    • Tsu, C.A.1    Uhlenbeck, O.C.2
  • 15
    • 0035046795 scopus 로고    scopus 로고
    • The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA
    • Tsu,C.A., Kossen,K. and Uhlenbeck,O.C. (2001) The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA. RNA, 7, 702-709.
    • (2001) RNA , vol.7 , pp. 702-709
    • Tsu, C.A.1    Kossen, K.2    Uhlenbeck, O.C.3
  • 16
    • 0033214564 scopus 로고    scopus 로고
    • Interaction of the Escherichia coli DEAD box protein DbpA with 23S ribosomal RNA
    • Pugh,G.E., Nicol,S.M. and Fuller-Pace,F.V. (1999) Interaction of the Escherichia coli DEAD box protein DbpA with 23S ribosomal RNA. J. Mol. Biol., 292, 771-778.
    • (1999) J. Mol. Biol. , vol.292 , pp. 771-778
    • Pugh, G.E.1    Nicol, S.M.2    Fuller-Pace, F.V.3
  • 17
    • 0037133527 scopus 로고    scopus 로고
    • Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA
    • Polach,K.J. and Uhlenbeck,O.C. (2002) Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA. Biochemistry, 41, 3693-3702.
    • (2002) Biochemistry , vol.41 , pp. 3693-3702
    • Polach, K.J.1    Uhlenbeck, O.C.2
  • 18
    • 0035476705 scopus 로고    scopus 로고
    • Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA
    • Diges,C.M. and Uhlenbeck,O.C. (2001) Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA. EMBO J., 20, 5503-5512.
    • (2001) EMBO J. , vol.20 , pp. 5503-5512
    • Diges, C.M.1    Uhlenbeck, O.C.2
  • 19
    • 0036015651 scopus 로고    scopus 로고
    • Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli
    • Moll,I., Grill,S., Grundling,A. and Blasi,U. (2002) Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli. Mol. Microbiol., 44, 1387-1396.
    • (2002) Mol. Microbiol. , vol.44 , pp. 1387-1396
    • Moll, I.1    Grill, S.2    Grundling, A.3    Blasi, U.4
  • 20
    • 0038120874 scopus 로고    scopus 로고
    • The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli
    • Charollais,J., Pflieger,D., Vinh,J., Dreyfus,M. and Iost,I. (2003) The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli. Mol. Microbiol., 48, 1253-1265.
    • (2003) Mol. Microbiol. , vol.48 , pp. 1253-1265
    • Charollais, J.1    Pflieger, D.2    Vinh, J.3    Dreyfus, M.4    Iost, I.5
  • 21
    • 0033214805 scopus 로고    scopus 로고
    • Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins
    • Kossen,K. and Uhlenbeck,O.C. (1999) Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res., 27, 3811-3820.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3811-3820
    • Kossen, K.1    Uhlenbeck, O.C.2
  • 22
    • 0036927393 scopus 로고    scopus 로고
    • The carboxy-terminal domain of the DExD/H protein YxiN is sufficient to confer specificity for 23S rRNA
    • Kossen,K., Karginov,F.V. and Uhlenbeck,O.C. (2002) The carboxy-terminal domain of the DExD/H protein YxiN is sufficient to confer specificity for 23S rRNA. J. Mol. Biol., 324, 625-636.
    • (2002) J. Mol. Biol. , vol.324 , pp. 625-636
    • Kossen, K.1    Karginov, F.V.2    Uhlenbeck, O.C.3
  • 24
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban,N., Nissen,P., Hansen,J., Moore,P.B. and Steitz,T.A. (2000) The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science, 289, 905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 26
    • 0037195926 scopus 로고    scopus 로고
    • The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states
    • Henn,A., Shi,S.P., Zarivach,R., Ben-Zeev,E. and Sagi,I. (2002) The RNA helicase DbpA exhibits a markedly different conformation in the ADP-bound state when compared with the ATP- or RNA-bound states. J. Biol. Chem., 277, 46559-46565.
    • (2002) J. Biol. Chem. , vol.277 , pp. 46559-46565
    • Henn, A.1    Shi, S.P.2    Zarivach, R.3    Ben-Zeev, E.4    Sagi, I.5
  • 27
    • 0032562221 scopus 로고    scopus 로고
    • The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes
    • Lorsch,J.R. and Herschlag,D. (1998) The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes. Biochemistry, 37, 2194-2206.
    • (1998) Biochemistry , vol.37 , pp. 2194-2206
    • Lorsch, J.R.1    Herschlag, D.2
  • 28
    • 0025022318 scopus 로고
    • DNA and nucleotide-induced conformational changes in the Escherichia coli Rep and Helicase II (UvrD) proteins
    • Chao,K. and Lohman,T.M. (1990) DNA and nucleotide-induced conformational changes in the Escherichia coli Rep and Helicase II (UvrD) proteins. J. Biol. Chem., 265, 1067-1076.
    • (1990) J. Biol. Chem. , vol.265 , pp. 1067-1076
    • Chao, K.1    Lohman, T.M.2
  • 29
    • 0030977227 scopus 로고    scopus 로고
    • The RecB protein of Escherichia coli translocates along single-stranded DNA in the 3′ to 5′ direction: A proposed ratchet mechanism
    • Phillips,R.J., Hickleton,D.C., Boehmer,P.E. and Emmerson,P.T. (1997) The RecB protein of Escherichia coli translocates along single-stranded DNA in the 3′ to 5′ direction: a proposed ratchet mechanism. Mol. Gen. Genet., 254, 319-329.
    • (1997) Mol. Gen. Genet. , vol.254 , pp. 319-329
    • Phillips, R.J.1    Hickleton, D.C.2    Boehmer, P.E.3    Emmerson, P.T.4
  • 30
  • 31
    • 0027180473 scopus 로고
    • An RNA motif that binds ATP
    • Sassanfar,M. and Szostak,J.W. (1993) An RNA motif that binds ATP. Nature, 364, 550-553.
    • (1993) Nature , vol.364 , pp. 550-553
    • Sassanfar, M.1    Szostak, J.W.2
  • 32
    • 0032518490 scopus 로고    scopus 로고
    • Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: The crystal structure provides insights into the mode of unwinding
    • Kim,J.L., Morgenstern,K.A., Griffith,J.P., Dwyer,M.D., Thomson,J.A., Murcko,M.A., Lin,C. and Caron,P.R. (1998) Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure, 6, 89-100.
    • (1998) Structure , vol.6 , pp. 89-100
    • Kim, J.L.1    Morgenstern, K.A.2    Griffith, J.P.3    Dwyer, M.D.4    Thomson, J.A.5    Murcko, M.A.6    Lin, C.7    Caron, P.R.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.