Interaction of the Escherichia coli DEAD box protein DbpA with 23 S ribosomal RNA

Journal of Molecular Biology

Volumn 292, Issue 4, 1999, Pages 771-778

  Pugh, G E ^a   Nicol, S M ^a   Fuller Pace, F V ^a  

^a UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

23 S rRNA; ATPase; DbpA; DEAD box protein; RNA binding

Indexed keywords

ADENOSINE TRIPHOSPHATASE; BACTERIAL PROTEIN; RIBOSOME RNA; RNA BINDING PROTEIN; RNA HELICASE;

ARTICLE; ENZYME ACTIVATION; ESCHERICHIA COLI; GEL MOBILITY SHIFT ASSAY; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA DEGRADATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0033214564     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3112     Document Type: Article

References (27)

1. Boddeker N., Stade K., Franceschi F. Characterization of DbpA, an Escherichia coli DEAD box protein with ATP independent RNA unwinding activity. Nucl. Acids Res. 25:1997;537-544.
2. 2+-stimulated ATPase activity. Anal. Biochem. 157:1986;375-380.
3. Ellis N. A. Mutation-causing mutations. Nature. 381:1996;110-111.
4. Fuller-Pace F. V. RNA helicases: modulators of RNA structure. Trends Cell Biol. 4:1994;271-274.
5. Fuller-Pace F. V., Nicol S. M., Reid A. D., Lane D. P. DbpA: a DEAD box protein specifically activated by 23 S rRNA. EMBO J. 12:1993;3619-3626.
6. Grifo J. A., Abramson R. D., Satler C. A., Merrick W. C. RNA-stimulated ATPase activity of eukaryotic initiation factors. J. Biol. Chem. 259:1984;8648-8654.
7. Hirling H., Scheffner M., Restle T., Stahl H. RNA helicase activity associated with the human p68 protein. Nature. 339:1989;562-564.
8. Iggo R., Picksley S., Southgate J., McPheat J., Lane D. P. Identification of a putative RNA helicase in E. coli. Nucl. Acids Res. 18:1990;5413-5417.
9. Jones P. G., Mitta M., Kim Y., Jiang W., Inouye M. Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc. Natl Acad. Sci. USA. 93:1996;76-80.
10. Kowalak J. A., Bruenger E., McCloskey J. A. Posttranscriptional modification of the central loop of domain V in Escherichia coli 23 S ribosomal RNA. J. Biol. Chem. 28:1995;17758-17764.
11. Lee C. G., Hurwitz J. A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3′ to 5′ direction. J. Biol. Chem. 267:1992;4398-4407.
12. Linder P., Lasko P. F., Leroy P., Nielsen P. J., Nishi K., Schnier J., Slonimski P. P. Birth of the D-E-A-D box. Nature. 337:1989;121-122.
13. Nicol S. M., Fuller-Pace F. V. The "DEAD box" protein DbpA interacts specifically with the peptidyltransferase centre in 23 S rRNA. Proc. Natl Acad. Sci. USA. 92:1995;11681-11685.
14. Nishi K., Morel D. F., Hershey J. W., Leighton T., Schnier J. An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50 S ribosomal subunit assembly. Nature. 336:1988;496-498.
15. Ohmori H. Structural analysis of the rhlE gene of Escherichia coli. Jpn. J. Genet. 69:1994;1-12.
16. Pause A., Sonenberg N. Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A. EMBO J. 11:1992;2643-2654.
17. Py B., Higgins C. F., Krisch H. M., Carpousis A. J. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature. 381:1996;169-172.
18. Rogers G. W., Richter N. J., Merrick W. C. Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A. J. Biol. Chem. 274:1999;12236-12244.
19. Rozen F., Pelletier J., Trachsel H., Sonenberg N. A lysine substitution in the ATP-binding site of eucaryotic initiation factor 4A abrogates nucleotide-binding activity. Mol. Cell. Biol. 9:1989;4061-4063.
20. Scheffner M., Knippers R., Stahl H. RNA unwinding activity of SV40 large T antigen. Cell. 57:1989;955-963.
21. Schmid S. R., Linder P. D-E-A-D protein family of putative RNA helicases. Mol. Microbiol. 6:1992;283-291.
22. Toone W. M., Rudd K. E., Friesen J. D. deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2. J. Bacteriol. 173:1991;3291-3302.
23. Tseng S. S., Weaver P. L., Liu Y., Hitomi M., Tartakoff A. M., Chang T. H. Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export. EMBO J. 17:1998;2651-2662.
24. Tsu C. A., Uhlenbeck O. C. Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23 S ribosomal RNA. Biochemistry. 37:1998;16989-16996.
25. Wang W., Riedel K., Lynch P., Chien C. Y., Montelione G. T., Krug R. M. RNA binding by the novel helical domain of the influenza virus NS1 protein requires its dimer structure and a small number of specific basic amino acids. RNA. 5:1999;195-205.
26. Wang Y., Wagner J. D. O., Guthrie C. The DEAH-box splicing factor Prp16 unwinds RNA duplexes in vitro. Curr. Biol. 8:1998;441-451.
27. Zhang S., Maacke H., Grosse F. Molecular cloning of the gene encoding nuclear DNA helicase II. A bovine homologue of human RNA helicase A andDrosophila Mle protein. J. Biol. Chem. 270:1995;16422-16427.