-
1
-
-
0032607587
-
Understanding structure-function relationships in the Aequorea victoria green fluorescent protein
-
Cubitt, A. B., Woollenweber, L. A., and Heim, R. (1999) Understanding structure-function relationships in the Aequorea victoria green fluorescent protein, Methods Cell Biol. 58, 19-30.
-
(1999)
Methods Cell Biol.
, vol.58
, pp. 19-30
-
-
Cubitt, A.B.1
Woollenweber, L.A.2
Heim, R.3
-
2
-
-
0029847806
-
Crystal structure of the Aequorea victoria green fluorescent protein
-
Ormo, M., Cubitt, A. B., Kallio, K., Gross, L. A., Tsien, R. Y., and Remington, S. J. (1996) Crystal structure of the Aequorea victoria green fluorescent protein, Science 273, 1392-5.
-
(1996)
Science
, vol.273
, pp. 1392-1395
-
-
Ormo, M.1
Cubitt, A.B.2
Kallio, K.3
Gross, L.A.4
Tsien, R.Y.5
Remington, S.J.6
-
3
-
-
0028580734
-
Wavelength mutations and posttranslational autoxidation of green fluorescent protein
-
Heim, R., Prasher, D. C., and Tsien, R. Y. (1994) Wavelength mutations and posttranslational autoxidation of green fluorescent protein, Proc. Natl Acad. Sci. U.S.A. 91, 12501-4.
-
(1994)
Proc. Natl Acad. Sci. U.S.A.
, vol.91
, pp. 12501-12504
-
-
Heim, R.1
Prasher, D.C.2
Tsien, R.Y.3
-
4
-
-
0029780351
-
The molecular structure of green fluorescent protein
-
Yang, F., Moss, L. G., and Phillips, G. N., Jr. (1996) The molecular structure of green fluorescent protein, Nat. Biotechnol. 14, 1246-51.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1246-1251
-
-
Yang, F.1
Moss, L.G.2
Phillips Jr., G.N.3
-
5
-
-
0032516480
-
pH-dependent fluorescence of a heterologously expressed Aequorea green fluorescent protein mutant: In situ spectral characteristics and applicability to intracellular pH estimation
-
Robey, R. B., Ruiz, O., Santos, A. V., Ma, J., Kear, F., Wang, L. J., Li, C. J., Bernardo, A. A., and Arruda, J. A. (1998) pH-dependent fluorescence of a heterologously expressed Aequorea green fluorescent protein mutant: In situ spectral characteristics and applicability to intracellular pH estimation, Biochemistry 37, 9894-901.
-
(1998)
Biochemistry
, vol.37
, pp. 9894-9901
-
-
Robey, R.B.1
Ruiz, O.2
Santos, A.V.3
Ma, J.4
Kear, F.5
Wang, L.J.6
Li, C.J.7
Bernardo, A.A.8
Arruda, J.A.9
-
6
-
-
0031885535
-
Green fluorescent protein as a noninvasive intracellular pH indicator
-
Kneen, M., Farinas, J., Li, Y., and Verkman, A. S. (1998) Green fluorescent protein as a noninvasive intracellular pH indicator, Biophys. J. 74, 1591-9.
-
(1998)
Biophys. J.
, vol.74
, pp. 1591-1599
-
-
Kneen, M.1
Farinas, J.2
Li, Y.3
Verkman, A.S.4
-
7
-
-
0029147089
-
Green fluorescent protein as a reporter of gene expression and protein localization
-
Kain, S. R., Adams, M., Kondepudi, A., Yang, T. T., Ward, W. W., and Kitts, P. (1995) Green fluorescent protein as a reporter of gene expression and protein localization, BioTechniques 19, 650-5.
-
(1995)
BioTechniques
, vol.19
, pp. 650-655
-
-
Kain, S.R.1
Adams, M.2
Kondepudi, A.3
Yang, T.T.4
Ward, W.W.5
Kitts, P.6
-
8
-
-
0037051635
-
Structural chemistry of a green fluorescent protein Zn biosensor
-
Barondeau, D. P., Kassmann, C. J., Tainer, J. A., and Getzoff, E. D. (2002) Structural chemistry of a green fluorescent protein Zn biosensor, J. Am. Chem. Soc. 124, 3522-4.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 3522-3524
-
-
Barondeau, D.P.1
Kassmann, C.J.2
Tainer, J.A.3
Getzoff, E.D.4
-
9
-
-
0033609034
-
Structural and spectral response of green fluorescent protein variants to changes in pH
-
Elsliger, M. A., Wachter, R. M., Hanson, G. T., Kallio, K., and Remington, S. J. (1999) Structural and spectral response of green fluorescent protein variants to changes in pH, Biochemistry 38, 5296-301.
-
(1999)
Biochemistry
, vol.38
, pp. 5296-5301
-
-
Elsliger, M.A.1
Wachter, R.M.2
Hanson, G.T.3
Kallio, K.4
Remington, S.J.5
-
10
-
-
0041154057
-
Crystal structure of histidine ammonia-lyase revealing a novel polypeptide modification as the catalytic electrophile
-
Schwede, T. F., Retey, J., and Schulz, G. E. (1999) Crystal structure of histidine ammonia-lyase revealing a novel polypeptide modification as the catalytic electrophile, Biochemistry 38, 5355-61.
-
(1999)
Biochemistry
, vol.38
, pp. 5355-5361
-
-
Schwede, T.F.1
Retey, J.2
Schulz, G.E.3
-
11
-
-
0035478435
-
Methylidene-imidazolone: A novel electrophile for substrate activation
-
Poppe, L. (2001) Methylidene-imidazolone: A novel electrophile for substrate activation, Curr. Opin. Chem. Biol. 5, 512-24.
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 512-524
-
-
Poppe, L.1
-
12
-
-
4444306767
-
Crystal structure of phenylalanine ammonia lyase: Multiple helix dipoles implicated in catalysis
-
Calabrese, J. C., Jordan, D. B., Boodhoo, A., Sariaslani, S., and Vannelli, T. (2004) Crystal structure of phenylalanine ammonia lyase: Multiple helix dipoles implicated in catalysis, Biochemistry 43, 11403-16.
-
(2004)
Biochemistry
, vol.43
, pp. 11403-11416
-
-
Calabrese, J.C.1
Jordan, D.B.2
Boodhoo, A.3
Sariaslani, S.4
Vannelli, T.5
-
13
-
-
0035808253
-
Mutants of Discosoma red fluorescent protein with a GFP-like chromophore
-
Wiehler, J., von Hummel, J., and Steipe, B. (2001) Mutants of Discosoma red fluorescent protein with a GFP-like chromophore, FEBS Lett. 487, 384-9.
-
(2001)
FEBS Lett.
, vol.487
, pp. 384-389
-
-
Wiehler, J.1
Von Hummel, J.2
Steipe, B.3
-
14
-
-
0034710921
-
The structure of the chromophore within DsRed, a red fluorescent protein from coral, Proc
-
Gross, L. A., Baird, G. S., Hoffman, R. C., Baldridge, K. K., and Tsien, R. Y. (2000) The structure of the chromophore within DsRed, a red fluorescent protein from coral, Proc. Natl. Acad. Sci. U.S.A. 97, 11990-5.
-
(2000)
Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 11990-11995
-
-
Gross, L.A.1
Baird, G.S.2
Hoffman, R.C.3
Baldridge, K.K.4
Tsien, R.Y.5
-
15
-
-
0242666241
-
The 2.0-Å crystal structure of eqFP611, a far red fluorescent protein from the sea anemone Entacmaea quadricolor
-
Petersen, J., Wilmann, P. G., Beddoe, T., Oakley, A. J., Devenish, R. J., Prescott, M., and Rossjohn, J. (2003) The 2.0-Å crystal structure of eqFP611, a far red fluorescent protein from the sea anemone Entacmaea quadricolor, J. Biol. Chem. 278, 44626-31.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 44626-44631
-
-
Petersen, J.1
Wilmann, P.G.2
Beddoe, T.3
Oakley, A.J.4
Devenish, R.J.5
Prescott, M.6
Rossjohn, J.7
-
16
-
-
0242361312
-
Photoinduced peptide cleavage in the green-to-red conversion of a fluorescent protein
-
Mizuno, H., Mal, T. K., Tong, K. I., Ando, R., Furuta, T., Ikura, M., and Miyawaki, A. (2003) Photoinduced peptide cleavage in the green-to-red conversion of a fluorescent protein, Mol. Cell 12, 1051-8.
-
(2003)
Mol. Cell
, vol.12
, pp. 1051-1058
-
-
Mizuno, H.1
Mal, T.K.2
Tong, K.I.3
Ando, R.4
Furuta, T.5
Ikura, M.6
Miyawaki, A.7
-
17
-
-
6344289261
-
Traditional GFP-type cyclization and unexpected fragmentation site in a purple chromoprotein from Anemonia sulcata, asFP595
-
Zagranichny, V. E., Rudenko, N. V., Gorokhovatsky, A. Y., Zakharov, M. V., Balashova, T. A., and Arseniev, A. S. (2004) Traditional GFP-type cyclization and unexpected fragmentation site in a purple chromoprotein from Anemonia sulcata, asFP595, Biochemistry 43, 13598-603.
-
(2004)
Biochemistry
, vol.43
, pp. 13598-13603
-
-
Zagranichny, V.E.1
Rudenko, N.V.2
Gorokhovatsky, A.Y.3
Zakharov, M.V.4
Balashova, T.A.5
Arseniev, A.S.6
-
18
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N., Palmer, A. E., and Tsien, R. Y. (2004) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein, Nat. Biotechnol. 22, 1567-72.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.4
Palmer, A.E.5
Tsien, R.Y.6
-
19
-
-
0036902813
-
Creating new fluorescent probes for cell biology
-
Zhang, J., Campbell, R. E., Ting, A. Y., and Tsien, R. Y. (2002) Creating new fluorescent probes for cell biology, Nat. Rev. Mol. Cell Biol. 3, 906-18.
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 906-918
-
-
Zhang, J.1
Campbell, R.E.2
Ting, A.Y.3
Tsien, R.Y.4
-
20
-
-
0029994339
-
Enhanced green fluorescence by the expression of an Aequorea victoria green fluorescent protein mutant in mono- And dicotyledonous plant cells
-
Reichel, C., Mathur, J., Eckes, P., Langenkemper, K., Koncz, C., Schell, J., Reiss, B., and Maas, C. (1996) Enhanced green fluorescence by the expression of an Aequorea victoria green fluorescent protein mutant in mono- and dicotyledonous plant cells, Proc. Natl. Acad. Sci. U.S.A. 93, 5888-93.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 5888-5893
-
-
Reichel, C.1
Mathur, J.2
Eckes, P.3
Langenkemper, K.4
Koncz, C.5
Schell, J.6
Reiss, B.7
Maas, C.8
-
21
-
-
0032532156
-
Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein
-
Wachter, R. M., Elsliger, M. A., Kallio, K., Hanson, G. T., and Remington, S. J. (1998) Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein, Structure 6, 1267-77.
-
(1998)
Structure
, vol.6
, pp. 1267-1277
-
-
Wachter, R.M.1
Elsliger, M.A.2
Kallio, K.3
Hanson, G.T.4
Remington, S.J.5
-
22
-
-
0142027791
-
Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures
-
Barondeau, D. P., Putnam, C. D., Kassmann, C. J., Tainer, J. A., and Getzoff, E. D. (2003) Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures, Proc. Natl. Acad. Sci. U.S.A. 100, 12111-6.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 12111-12116
-
-
Barondeau, D.P.1
Putnam, C.D.2
Kassmann, C.J.3
Tainer, J.A.4
Getzoff, E.D.5
-
23
-
-
0032515404
-
A computational analysis of the unique protein induced tight turn that results in posttranslational chromophore formation in green fluorescent protein
-
Branchini, B. R., Nemser, A. R., and Zimmer, M. (1998) A computational analysis of the unique protein induced tight turn that results in posttranslational chromophore formation in green fluorescent protein, J. Am. Chem. Soc. 120, 1-6.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 1-6
-
-
Branchini, B.R.1
Nemser, A.R.2
Zimmer, M.3
-
24
-
-
0028921834
-
Improved green fluorescence
-
Heim, R., Cubitt, A. B., and Tsien, R. Y. (1995) Improved green fluorescence, Nature 373, 663-4.
-
(1995)
Nature
, vol.373
, pp. 663-664
-
-
Heim, R.1
Cubitt, A.B.2
Tsien, R.Y.3
-
25
-
-
13544256284
-
Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry
-
Barondeau, D. P., Kassmann, C. J., Tainer, J. A., and Getzoff, E. D. (2005) Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry, Biochemistry 44, 1960-70.
-
(2005)
Biochemistry
, vol.44
, pp. 1960-1970
-
-
Barondeau, D.P.1
Kassmann, C.J.2
Tainer, J.A.3
Getzoff, E.D.4
-
26
-
-
0031006611
-
Chromophore formation in green fluorescent protein
-
Reid, B. G., and Flynn, G. C. (1997) Chromophore formation in green fluorescent protein, Biochemistry 36, 6786-91.
-
(1997)
Biochemistry
, vol.36
, pp. 6786-6791
-
-
Reid, B.G.1
Flynn, G.C.2
-
27
-
-
0029347056
-
Rapid purification of recombinant green fluorescent protein using the hydrophobic properties of an HPLC size-exclusion column
-
Deschamps, J. R., Miller, C. E., and Ward, K. B. (1995) Rapid purification of recombinant green fluorescent protein using the hydrophobic properties of an HPLC size-exclusion column, Protein Expression Purif. 6, 555-8.
-
(1995)
Protein Expression Purif.
, vol.6
, pp. 555-558
-
-
Deschamps, J.R.1
Miller, C.E.2
Ward, K.B.3
-
28
-
-
0031059866
-
Processing of X-ray Diffraction Data Collected in Oscillation Mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode, Methods Enzymol. 276, 307-26.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
29
-
-
0028103275
-
The CCP4 Suite: Programs for Protein Crystallography
-
Collaborative Computational Project, No. 4 (1994) The CCP4 Suite: Programs for Protein Crystallography, Acta Crystallogr. D50, 760-3.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
-
30
-
-
0032790081
-
XtalView/Xfit: A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. (1999) XtalView/Xfit: A versatile program for manipulating atomic coordinates and electron density, J. Struct. Biol. 125, 156-65.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
31
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D54 (Part 5), 905-21.
-
(1998)
Acta Crystallogr.
, vol.D54
, Issue.PART 5
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
33
-
-
0024700676
-
The Application Visualization System: A Computational Environment for Scientific Visualization
-
Craig Upson, T. F., Jr., Kamins, D., Laidlaw, D., Schlegel, D., Vroom, J., Gurwitz, R., and van Dam, A. (1989) The Application Visualization System: A Computational Environment for Scientific Visualization, IEEE Comput. Graphics Appl. 9, 30-42.
-
(1989)
IEEE Comput. Graphics Appl.
, vol.9
, pp. 30-42
-
-
Craig Upson Jr., T.F.1
Kamins, D.2
Laidlaw, D.3
Schlegel, D.4
Vroom, J.5
Gurwitz, R.6
Van Dam, A.7
-
34
-
-
0029670330
-
Improved green fluorescent protein by molecular evolution using DNA shuffling
-
Crameri, A., Whitehorn, E. A., Tate, E., and Stemmer, W. P. (1996) Improved green fluorescent protein by molecular evolution using DNA shuffling, Nat. Biotechnol. 14, 315-9.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 315-319
-
-
Crameri, A.1
Whitehorn, E.A.2
Tate, E.3
Stemmer, W.P.4
-
35
-
-
0029973636
-
FACS-optimized mutants of the green fluorescentprotein (GFP)
-
Cormack, B. P., Valdivia, R. H., and Falkow, S. (1996) FACS-optimized mutants of the green fluorescentprotein (GFP), Gene 173, 33-8.
-
(1996)
Gene
, vol.173
, pp. 33-38
-
-
Cormack, B.P.1
Valdivia, R.H.2
Falkow, S.3
-
36
-
-
0031663369
-
The green fluorescent protein
-
Tsien, R. Y. (1998) The green fluorescent protein, Annu. Rev. Biochem. 67, 509-44.
-
(1998)
Annu. Rev. Biochem.
, vol.67
, pp. 509-544
-
-
Tsien, R.Y.1
-
37
-
-
0030087710
-
Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer
-
Heim, R., and Tsien, R. Y. (1996) Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer, Curr. Biol. 6, 178-82.
-
(1996)
Curr. Biol.
, vol.6
, pp. 178-182
-
-
Heim, R.1
Tsien, R.Y.2
-
38
-
-
0034604399
-
Crystallographic and energetic analysis of binding of selected anions to the yellow variants of green fluorescent protein
-
Wachter, R. M., Yarbrough, D., Kallio, K., and Remington, S. J. (2000) Crystallographic and energetic analysis of binding of selected anions to the yellow variants of green fluorescent protein, J. Mol. Biol. 301, 157-71.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 157-171
-
-
Wachter, R.M.1
Yarbrough, D.2
Kallio, K.3
Remington, S.J.4
-
39
-
-
0035152671
-
Theoretical study of the mechanism of peptide ring formation in green fluorescent protein
-
Siegbahn, P. E. M., Wirstam, M., and Zimmer, M. (2001) Theoretical study of the mechanism of peptide ring formation in green fluorescent protein, Int. J. Quantum Chem. 81, 169-86.
-
(2001)
Int. J. Quantum Chem.
, vol.81
, pp. 169-186
-
-
Siegbahn, P.E.M.1
Wirstam, M.2
Zimmer, M.3
-
40
-
-
0037137223
-
Binding of dioxygen to nonmetal sites in proteins: Exploration of the importance of binding site size versus hydrophobicity in the copper amine oxidase from Hansenula polymorpha
-
Goto, Y., and Klinman, J. P. (2002) Binding of dioxygen to nonmetal sites in proteins: Exploration of the importance of binding site size versus hydrophobicity in the copper amine oxidase from Hansenula polymorpha, Biochemistry 41, 13637-43.
-
(2002)
Biochemistry
, vol.41
, pp. 13637-13643
-
-
Goto, Y.1
Klinman, J.P.2
-
41
-
-
19744378582
-
Maturation efficiency, trypsin sensitivity, and optical properties of Arg96, Glu222, and Gly67 variants of green fluorescent protein
-
Sniegowski, J. A., Phail, M. E., and Wachter, R. M. (2005) Maturation efficiency, trypsin sensitivity, and optical properties of Arg96, Glu222, and Gly67 variants of green fluorescent protein, Biochem. Biophys. Res. Commun. 332, 657-63.
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.332
, pp. 657-663
-
-
Sniegowski, J.A.1
Phail, M.E.2
Wachter, R.M.3
-
42
-
-
22544460277
-
Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein
-
Sniegowski, J. A., Lappe, J. W., Patel, H. N., Huffman, H. A., and Wachter, R. M. (2005) Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein, J. Biol. Chem. 280, 26248-55.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 26248-26255
-
-
Sniegowski, J.A.1
Lappe, J.W.2
Patel, H.N.3
Huffman, H.A.4
Wachter, R.M.5
|