-
1
-
-
0036303417
-
Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16S RNA
-
Brodersen, D.E., Clemons Jr., W.M., Carter, A.P., Wimberly, B.T., and Ramakrishnan, V. 2002. Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16S RNA. J. Mol. Biol. 316: 725-768.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 725-768
-
-
Brodersen, D.E.1
Clemons Jr., W.M.2
Carter, A.P.3
Wimberly, B.T.4
Ramakrishnan, V.5
-
2
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, N., Pannu, N.S., et al. 1998. Crystallography and NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54: 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, N.9
Pannu, N.S.10
-
4
-
-
0024206339
-
Translational regulation of the spc operon in Escherichia coli: Identification and structural analysis of the target site for S8 repressor protein
-
Cerretti, D.P., Mattheakis, L.C., Kearney, K.R., Vu, L., and Nomura, M. 1988. Translational regulation of the spc operon in Escherichia coli: Identification and structural analysis of the target site for S8 repressor protein. J. Mol. Biol. 204: 309-329.
-
(1988)
J. Mol. Biol.
, vol.204
, pp. 309-329
-
-
Cerretti, D.P.1
Mattheakis, L.C.2
Kearney, K.R.3
Vu, L.4
Nomura, M.5
-
5
-
-
0016708122
-
Principles of protein-protein recognition
-
Chothia, C. and Janin, J. 1975. Principles of protein-protein recognition. Nature 256: 705-708.
-
(1975)
Nature
, vol.256
, pp. 705-708
-
-
Chothia, C.1
Janin, J.2
-
6
-
-
0031574326
-
The loop E-loop D region of Escherichia coli 5S rRNA: The solution structure reveals an unusual loop that may be important for binding ribosomal proteins
-
Dallas, A. and Moore, P.B. 1997. The loop E-loop D region of Escherichia coli 5S rRNA: The solution structure reveals an unusual loop that may be important for binding ribosomal proteins. Structure 5: 1639-1653.
-
(1997)
Structure
, vol.5
, pp. 1639-1653
-
-
Dallas, A.1
Moore, P.B.2
-
7
-
-
0030587524
-
Structural evidence for specific S8-RNA and S8-protein interactions within the 30S ribosomal subunit: Ribosomal protein S8 from Bacillus stearothermophilus at 1.9 Å resolution
-
Davies, C., Ramakrishnan, V., and White, S.W. 1996. Structural evidence for specific S8-RNA and S8-protein interactions within the 30S ribosomal subunit: ribosomal protein S8 from Bacillus stearothermophilus at 1.9 Å resolution. Structure 4: 1093-1104.
-
(1996)
Structure
, vol.4
, pp. 1093-1104
-
-
Davies, C.1
Ramakrishnan, V.2
White, S.W.3
-
8
-
-
0019349494
-
Escherichia coli ribosomal protein S8 feedback regulates part of the spc operon
-
Dean, D., Yates, J.L., and Nomura, M. 1981. Escherichia coli ribosomal protein S8 feedback regulates part of the spc operon. Nature 289: 89-91.
-
(1981)
Nature
, vol.289
, pp. 89-91
-
-
Dean, D.1
Yates, J.L.2
Nomura, M.3
-
10
-
-
0018390319
-
Regulation of ribosomal protein synthesis in Escherichia coli by selective mRNA inactivation
-
Fallon, A.M., Jinks, C.S., Strycharz, G.D., and Nomura, M. 1979. Regulation of ribosomal protein synthesis in Escherichia coli by selective mRNA inactivation. Proc. Natl. Acad. Sci. 76: 3411-3415.
-
(1979)
Proc. Natl. Acad. Sci.
, vol.76
, pp. 3411-3415
-
-
Fallon, A.M.1
Jinks, C.S.2
Strycharz, G.D.3
Nomura, M.4
-
11
-
-
0018901490
-
Posttranscriptional regulatory mutants in a ribosomal protein-RNA polymerase operon of E. coli
-
Fiil, N.P., Friesen, J.D., Downing, W.L., and Dennis, P.P. 1980. Posttranscriptional regulatory mutants in a ribosomal protein-RNA polymerase operon of E. coli. Cell 19: 837-844.
-
(1980)
Cell
, vol.19
, pp. 837-844
-
-
Fiil, N.P.1
Friesen, J.D.2
Downing, W.L.3
Dennis, P.P.4
-
12
-
-
0024270439
-
Interaction of Escherichia coli ribosomal protein S8 with its binding sites in ribosomal RNA and messenger RNA
-
Gregory, R.R., Cahill, P.B.F., Thurlow, D.L., and Zimmermann, R.A. 1988. Interaction of Escherichia coli ribosomal protein S8 with its binding sites in ribosomal RNA and messenger RNA. J. Mol. Biol. 204: 295-307.
-
(1988)
J. Mol. Biol.
, vol.204
, pp. 295-307
-
-
Gregory, R.R.1
Cahill, P.B.F.2
Thurlow, D.L.3
Zimmermann, R.A.4
-
13
-
-
0030841587
-
Electron-density map interpretation
-
Jones, T.A. and Kjeldgard, M. 1997. Electron-density map interpretation. Methods Enzymol. 277: 173-208.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 173-208
-
-
Jones, T.A.1
Kjeldgard, M.2
-
14
-
-
0030975691
-
Structural features of the binding site for ribosomal protein S8 in Escherichia coli 16S rRNA defined using NMR spectroscopy
-
Kalurachchi, K., Uma, K., Zimmermann, R.A., and Nikonowicz, E.P. 1997. Structural features of the binding site for ribosomal protein S8 in Escherichia coli 16S rRNA defined using NMR spectroscopy. Proc. Natl. Acad. Sci. 94: 2139-2144.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 2139-2144
-
-
Kalurachchi, K.1
Uma, K.2
Zimmermann, R.A.3
Nikonowicz, E.P.4
-
15
-
-
0031574325
-
Not your average density
-
Kleywegt, G.J. and Read, R.J. 1997. Not your average density. Structure 5: 1557-1569.
-
(1997)
Structure
, vol.5
, pp. 1557-1569
-
-
Kleywegt, G.J.1
Read, R.J.2
-
16
-
-
0018583181
-
Operon-specific regulation of ribosomal protein synthesis in Escherichia coli
-
Lindahl, L. and Zengel, J.M. 1979. Operon-specific regulation of ribosomal protein synthesis in Escherichia coli. Proc. Natl. Acad. Sci. 76: 6542-6546.
-
(1979)
Proc. Natl. Acad. Sci.
, vol.76
, pp. 6542-6546
-
-
Lindahl, L.1
Zengel, J.M.2
-
17
-
-
0024094562
-
Feedback regulation of the spc operon in Escherichia coli: Translational coupling and mRNA processing
-
Mattheakis, L. and Nomura, M. 1988. Feedback regulation of the spc operon in Escherichia coli: Translational coupling and mRNA processing. J Bacteriol. 170: 4482-4492.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 4482-4492
-
-
Mattheakis, L.1
Nomura, M.2
-
18
-
-
0024509153
-
Retroregulation of the synthesis of ribosomal proteins L14 and L24 by feedback repressor S8 in Escherichia coli
-
Mattheakis, L., Vu, L., Sor, F., and Nomura, M. 1989. Retroregulation of the synthesis of ribosomal proteins L14 and L24 by feedback repressor S8 in Escherichia coli. Proc. Natl. Acad. Sci. 86: 448-452.
-
(1989)
Proc. Natl. Acad. Sci.
, vol.86
, pp. 448-452
-
-
Mattheakis, L.1
Vu, L.2
Sor, F.3
Nomura, M.4
-
19
-
-
0023053359
-
Binding of Escherichia coli ribosomal protein S8 to 16S rRNA: Kinetic and thermodynamic characterization
-
Mougel, M., Ehresmann, B., and Ehresmann, C. 1986. Binding of Escherichia coli ribosomal protein S8 to 16S rRNA: Kinetic and thermodynamic characterization. Biochemistry 25: 2756-2765.
-
(1986)
Biochemistry
, vol.25
, pp. 2756-2765
-
-
Mougel, M.1
Ehresmann, B.2
Ehresmann, C.3
-
20
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G.N., Vagin, A.A., and Dodson, E.J. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53: 240-255.
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
21
-
-
0016170849
-
RNA-protein interactions in the ribosome. I: Characterization and ribonuclease digestion of 16 S RNA-ribosomal protein complexes
-
Muto, A., Ehresmann, C., Fellner, P., and Zimmermann, R.A. 1974. RNA-protein interactions in the ribosome, I: Characterization and ribonuclease digestion of 16 S RNA-ribosomal protein complexes. J. Mol. Biol. 86: 411-432.
-
(1974)
J. Mol. Biol.
, vol.86
, pp. 411-432
-
-
Muto, A.1
Ehresmann, C.2
Fellner, P.3
Zimmermann, R.A.4
-
22
-
-
0035788101
-
Implementation of molecular replacement in AMoRe
-
Navaza, J. 2001. Implementation of molecular replacement in AMoRe. Acta Crystallogr. D Biol. Crystallogr. 57: 1367-1372.
-
(2001)
Acta Crystallogr. D Biol. Crystallogr.
, vol.57
, pp. 1367-1372
-
-
Navaza, J.1
-
23
-
-
0032577262
-
Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site
-
Nevskaya, N., Tishchenko, S., Nikulin, A., Al-Karadaghi, S., Liljas, A., Ehresmann, B., Ehresmann, C., Garber, M., and Nikonov, S. 1998. Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site. J. Mol. Biol. 279: 233-244.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 233-244
-
-
Nevskaya, N.1
Tishchenko, S.2
Nikulin, A.3
Al-Karadaghi, S.4
Liljas, A.5
Ehresmann, B.6
Ehresmann, C.7
Garber, M.8
Nikonov, S.9
-
24
-
-
0019126505
-
Feedback regulation of ribosomal protein gene expression in Escherichia coli: Structural homology of ribosomal RNA and ribosomal protein mRNA
-
Nomura, M., Yates, J.L., Dean, D., and Post, L.E. 1980. Feedback regulation of ribosomal protein gene expression in Escherichia coli: Structural homology of ribosomal RNA and ribosomal protein mRNA. Proc. Natl. Acad. Sci. 77: 7084-7088.
-
(1980)
Proc. Natl. Acad. Sci.
, vol.77
, pp. 7084-7088
-
-
Nomura, M.1
Yates, J.L.2
Dean, D.3
Post, L.E.4
-
25
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276: 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
26
-
-
0019444687
-
Apparent association constants for E. coli ribosomal proteins S4, S7, S8, S15, S17 and S20 binding to 16S RNA
-
Schwarzbauer, J. and Craven, G.R. 1981. Apparent association constants for E. coli ribosomal proteins S4, S7, S8, S15, S17 and S20 binding to 16S RNA. Nucleic Acid Res. 9: 2223-2237.
-
(1981)
Nucleic Acid Res.
, vol.9
, pp. 2223-2237
-
-
Schwarzbauer, J.1
Craven, G.R.2
-
27
-
-
0025283867
-
Use of T7 RNA polymerase to direct expression of cloned genes
-
Studier, F.W., Rosenberg, A.H., Dunn, J.J., and Dubendorff, J.W. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185: 60-89.
-
(1990)
Methods Enzymol.
, vol.185
, pp. 60-89
-
-
Studier, F.W.1
Rosenberg, A.H.2
Dunn, J.J.3
Dubendorff, J.W.4
-
29
-
-
0035838973
-
Detailed analysis of RNA-protein interactions within ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii
-
Tishchenko, S.V., Nikulin, A., Fomenkova, N.P., Nevskaya, N., Nikonov, O., Dumas, P., Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., et al. 2001. Detailed analysis of RNA-protein interactions within ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii. J. Mol. Biol. 311: 311-324.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 311-324
-
-
Tishchenko, S.V.1
Nikulin, A.2
Fomenkova, N.P.3
Nevskaya, N.4
Nikonov, O.5
Dumas, P.6
Moine, H.7
Ehresmann, B.8
Ehresmann, C.9
Piendl, W.10
-
30
-
-
0000888502
-
The locked rotation function
-
Tong, L. and Rossman, M.G. 1990. The locked rotation function. Acta Crystallokr. A 46: 783-792.
-
(1990)
Acta Crystallokr. A
, vol.46
, pp. 783-792
-
-
Tong, L.1
Rossman, M.G.2
-
31
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly, B.T., Brodersen, D.E., Clemons Jr., W.M., Morgan-Warren, R.J., Carter, A.P., Vonrhein, C., Hartsch, T., and Ramakrishnan, V. 2000. Structure of the 30S ribosomal subunit. Nature 407: 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
32
-
-
0026586406
-
Mutagenesis of ribosomal protein S8 from Escherichia coli: Defects in regulation of the spc operon
-
Wower, I., Kowaleski, M.P., Sears, L.E., and Zimmermann, R.A. 1992. Mutagenesis of ribosomal protein S8 from Escherichia coli: Defects in regulation of the spc operon. J. Bacteriol. 174: 1213-1221.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 1213-1221
-
-
Wower, I.1
Kowaleski, M.P.2
Sears, L.E.3
Zimmermann, R.A.4
-
33
-
-
0027180802
-
Mutagenesis of ribosomal protein S8 from Escherichia coli: Expression, stability, and RNA-binding properties of S8 mutants
-
Wu, H., Wower, I., and Zimmermann, R.A. 1993. Mutagenesis of ribosomal protein S8 from Escherichia coli: Expression, stability, and RNA-binding properties of S8 mutants. Biochemistry 32: 1461-1468.
-
(1993)
Biochemistry
, vol.32
, pp. 1461-1468
-
-
Wu, H.1
Wower, I.2
Zimmermann, R.A.3
-
34
-
-
0028238892
-
The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: Minimum structural requirements and the effects of single bulged bases on S8-RNA interaction
-
Wu, H., Jiang, L., and Zimmermann, R.A. 1994. The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: Minimum structural requirements and the effects of single bulged bases on S8-RNA interaction. Nucleic Acid. Res. 22: 1687-1695.
-
(1994)
Nucleic Acid Res.
, vol.22
, pp. 1687-1695
-
-
Wu, H.1
Jiang, L.2
Zimmermann, R.A.3
-
35
-
-
0031059039
-
Detecting and overcoming crystal twinning
-
Yeates, T.O. 1997. Detecting and overcoming crystal twinning. Methods Enzymol. 276: 344-358.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 344-358
-
-
Yeates, T.O.1
-
36
-
-
0035958587
-
The path of messenger RNA through the ribosome
-
Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., and Noller, H.F. 2001. The path of messenger RNA through the ribosome. Cell 106: 233-241.
-
(2001)
Cell
, vol.106
, pp. 233-241
-
-
Yusupova, G.Z.1
Yusupov, M.M.2
Cate, J.H.D.3
Noller, H.F.4
-
37
-
-
0028251157
-
Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli
-
Zengel, J.M. and Lindahl, L. 1994. Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli. Prog. Nucleic Acid. Res. Mol. Biol. 47: 331-370.
-
(1994)
Prog. Nucleic Acid. Res. Mol. Biol.
, vol.47
, pp. 331-370
-
-
Zengel, J.M.1
Lindahl, L.2
|