Domain structure of the ribozyme from eubacterial ribonuclease P

RNA

Volumn 2, Issue 6, 1996, Pages 551-563

  Loria, Andrew ^a   Pan, Tao ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

domain; folding; P RNA; ribozyme

Indexed keywords

BACTERIAL RNA; EDETATE IRON; HYDROXYL RADICAL; RIBONUCLEASE P; RIBOZYME; RNA PRECURSOR; TRANSFER RNA;

ARTICLE; BACILLUS SUBTILIS; CONTROLLED STUDY; ENZYME STRUCTURE; ESCHERICHIA COLI; EUBACTERIUM; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; RNA STRUCTURE;

BACILLUS SUBTILIS; BASE SEQUENCE; BINDING SITES; CLONING, MOLECULAR; EDETIC ACID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENDORIBONUCLEASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FERROUS COMPOUNDS; HYDROXYL RADICAL; KINETICS; MAGNESIUM; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RIBONUCLEASE P; RNA, BACTERIAL; RNA, CATALYTIC;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0029949699     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. Altman S, Kirsebom L, Talbot S. 1993. Recent studies of ribonuclease P. FASEB J 7:7-14.
2. Brown JW, Pace NR. 1992. Ribonuclease P RNA and protein subunits from bacteria. Nucleic Acids Res 20:1451-1456.
3. Celander DW, Cech TR. 1991. Visualizing the higher order folding of a catalytic RNA molecule. Science 251:401-407.
4. Doudna JA, Cech TR. 1995. Self-assembly of a group I intron active site from its component tertiary structural domains. RNA 1:36-45.
5. England TE, Bruce AG, Uhlenbeck OC. 1980. Specific labeling of 3′ termini of RNA with T4 RNA ligase. Methods Enzymol 65:65-74.
6. Haas ES, Brown JW, Pitulle C, Pace NR. 1994. Further perspective on the catalytic core and secondary structure of ribonuclease P RNA. Proc Natl Acad Sci USA 97:2527-2531.
7. Haas ES, Morse DP, Brown JW, Schmidt FJ, Pace NR. 1991. Long-range structure in ribonuclease P RNA. Science 254:853-856.
8. Harris ME, Nolan JM, Malhotra A, Brown JW, Pace NR. 1994. Global architecture of the ribonuclease P RNA-pre tRNA complex. EMBO J 13:3953-3963.
9. Kirsebom LA, Svard SG. 1994. Base pairing between E. coli RNase P RNA and its substrate. EMBO J 73:4870-4876.
10. LaGrandeur TE, Huttenhofer A, Noller HF, Pace NR. 1994. Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA. EMBO J 73:3945-3952.
11. Latham JA, Cech TR. 1989. Defining the inside and outside of a catalytic RNA molecule. Science 245:276-282.
12. Milligan JF, Groebe DR, Witherell GW, Uhlenbeck OC. 1987. Oligo-ribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res 15:8783-8798.
13. Murphy FL, Cech TR. 1993. An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme. Biochemistry 32:5291-5300.
14. Murphy FL, Cech TR. 1994. GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. J Mol Biol 236:49-63.
15. Nolan JM, Burke DH, Pace NR. 1993. Circularly permuted tRNAs as specific photoaffinity probes of ribonuclease P RNA structure. Science 261:762-765.
16. Oh BK, Pace NR. 1994. Interaction of the 3′-end of tRNA with ribonuclease P RNA. Nucleic Acids Res 22:4087-4094.
17. Pace NR, Brown JW. 1995. Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme. J Bacteriol 177:1919-1928.
18. Pan T. 1995. Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P. Biochemistry 34:902-909.
19. Pan T, Jakacka M. 1996. Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P. EMBO J. 15:2249-2255.
20. Pan T, Loria A, Zhong K. 1995. Probing tertiary interactions in RNA: 2′OH-base contacts between the RNase P RNA and pre-tRNA. Proc Natl Acad Sci USA 92:12510-12514.
21. Pan T, Zhong K. 1994. Selection of circularly permuted ribozymes from Bacillus subtilis RNase P by substrate binding. Biochemistry 33:14207-14212.
22. Schlegl J, Hardt WD, Erdmann V, Hartmann RK. 1994. Contribution of structural elements to Thermus thermophilus ribonuclease P RNA function. EMBO J 13:4863-4869.
23. Tanner MA, Cech TR. 1995. An important RNA tertiary interaction of group I and group II introns is implicated in Gram-positive RNase P RNAs. RNA 1:349-350.
24. Wang YH, Murphy FL, Cech TR, Griffith JD. 1994. Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy. J Mol Biol 236:64-71.
25. Waugh DS, Pace NR. 1993. Gap-scan deletion analysis of Bacillus subtilis RNase P RNA. FASEB J 7:188-195.
26. Westhof E, Altman S. 1994. Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli. Proc Natl Acad Sci USA 91:5133-5137.