A negative elongation factor for human RNA polymerase II inhibits the anti-arrest transcript-cleavage factor TFIIS

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 42, 2005, Pages 15036-15041

  Palangat, Murali ^a   Renner, Dan B ^b   Price, David H ^b   Landick, Robert ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF IOWA   (United States)

Author keywords

Backtracking; Pausing; Transcription elongation

Indexed keywords

DNA; ELONGATION FACTOR; MESSENGER RNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IIS; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; PRIORITY JOURNAL; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

ANIMALS; DNA; HUMANS; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; NUCLEAR PROTEINS; PEPTIDE ELONGATION FACTORS; PROTEIN BINDING; PROTEIN CONFORMATION; RNA; RNA POLYMERASE II; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; TRANSCRIPTIONAL ELONGATION FACTORS;

ESCHERICHIA COLI; EUKARYOTA; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 27244444725     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0409405102     Document Type: Article

References (48)

1. Price, D. H. (2000) Mol. Cell. Biol. 20, 2629-2634.
2. Arndt, K. M. & Kane, C. M. (2003) Trends Genet. 19, 543-550.
3. Shilatifard, A., Conaway, R. C. & Conaway, J. W. (2003) Annu. Rev. Biochem. 72, 693-715.
4. Hartzog, G. A. (2003) Curr. Opin. Genet. Dev. 13, 119-126.
5. Sims, R. J., 3rd, Belotserkovskaya, R. & Reinberg, D. (2004) Genes Dev. 18, 2437-2468.
6. Wada, T., Takagi, T., Yamaguchi, Y., Ferdous, A., I., T., Hirose, S., Sugimoto, S., Yano, K., Hartzog, G., Winston, F., Buratowski, S., et al. (1998) Genes Dev. 12, 343-356.
7. Bourgeois, C. F., Kim, Y. K., Churcher, M. J., West, M. J. & Karn, J. (2002) Mol. Cell. Biol. 22, 1079-1093.
8. Narita, T., Yamaguchi, Y., Yano, K., Sugimoto, S., Chanarat, S., Wada, T., Kim, D. K., Hasegawa, J., Omori, M., Inukai, N., et al. (2003) Mol. Cell. Biol. 23, 1863-1873.
9. Yamaguchi, Y., Inukai, N., Narita, T., Wada, T. & Handa, H. (2002) Mol. Cell. Biol. 22, 2918-2927.
10. Ivanov, D., Kwak, Y. T., Quo, J. & Gaynor, R. B. (2000) Mol. Cell. Biol. 20, 2970-2983.
11. Pei, Y. & Shuman, S. (2003) J. Biol. Chem. 278, 43346-43356.
12. Fujinaga, K., Irwin, D., Huang, Y., Taube, R., Kurosu, T. & Peterlin, B. M. (2004) Mol. Cell. Biol 24, 787-795.
13. Yamaguchi, Y., Takagi, T., Wada, T., Yano, K., Furuya, A., Sugimoto, S., Hasegawa, J. & Handa, H. (1999) Cell 97, 41-51.
14. Renner, D. B., Yamaguchi, Y., Wada, T., Handa, H. & Price, D. H. (2001) J. Biol. Chem. 276, 42601-42609.
15. Wu, C. H., Yamaguchi, Y., Benjamin, L. R., Horvat-Gordon, M., Washinsky, J., Enerly, E., Larsson, J., Lambertsson, A., Handa, H. & Gilmour, D. (2003) Genes Dev. 17, 1402-1414.
16. Aiyar, S. E., Sun, J. L., Blair, A. L., Moskaluk, C. A., Lu, Y. Z., Ye, Q. N., Yamaguchi, Y., Mukherjee, A., Ren, D. M., Handa, H., et al. (2004) Genes Dev. 18, 2134-2146.
17. Lis, J. (1998) Cold Spring Harbor Symp. Quant. Biol. 63, 347-356.
18. Fing, Y. H. & Rana, T. M. (2001) J. Biol. Chem. 276, 12951-12958.
19. Mandal, S. S., Chu, C., Wada, T., Handa, H., Shatkin, A. J. & Reinberg, D. (2004) Proc. Natl. Acad. Sci. USA 101, 7572-7577.
20. Pal, M., McKean, D. & Luse, D. S. (2001) Mol. Cell. Biol. 21, 5815-5825.
21. Adelman, K., Marr, M., Werner, J., Saunders, A., Ni, Z., Andrulis, E. D. & Lis, J. T. (2005) Mol. Cell 17, 103-112.
22. Marr, M. T. & Roberts, J. W. (2000) Mol. Cell 6, 1275-1285.
23. Kettenberger, H., Armache, K. J. & Cramer, P. (2003) Cell 114, 347-357.
24. Opalka, N., Chlenov, M., Chacon, P., Rice, W. J., Wriggers, W. & Darst, S. A. (2003) Cell 114, 335-345.
25. Laptenko, O., Lee, J., Lomakin, I. & Borukhov, S. (2003) EMBO J. 22, 6322-6334.
26. Sosunova, E., Sosunov, V., Kozlov, M., Nikiforov, V., Goldfarb, A. & Mustaev, A. (2003) Proc. Natl. Acad. Sci. USA 100, 15469-15474.
27. Palangat, M., Meier, T., Keene, R. & Landick, R. (1998) Mol. Cell 1, 1033-1042.
28. Palangat, M. & Landick, R. (2001) J. Mol. Biol. 311, 265-282.
29. Yoo, O. J., Yoon, H. S., Baek, K. H., Jeon, C. J., Miyamoto, K., Ueno, A. & Agarwal, K. (1991) Nucleic Acids Res. 19, 1073-1079.
30. Theissen, G., Pardon, B. & Wagner, R. (1990) Anal. Biochem. 189, 254-261.
31. Landick, R., Wang, D. & Chan, C. L. (1996) Methods Enzymol. 274, 334-353.
32. Wu, J., Awrey, D. E., Edwards, A. M., Archambault, J. & Friesen, J. D. (1996) Proc. Natl. Acad. Sci. USA 93, 11552-11557.
33. Weilbaecher, R. G., Awrey, D. E., Edwards, A. M. & Kane, C. M. (2003) J. Biol. Chem. 278, 24189-24199.
34. Orlova, M., Newlands, J., Das, A., Goldfarb, A. & Borukhov, S. (1995) Proc. Natl. Acad. Sci. USA 92, 4596-4600.
35. Gu, W. & Reines, D. (1995) J. Biol. Chem. 270, 30441-30447.
36. Korzheva, N., Mustaev, A., Kozlov, M., Malhotra, A., Nikiforov, V., Goldfarb, A. & Darst, S. A. (2000) Science 289, 619-625.
37. Gnatt, A., Cramer, P., Fu, J., Bushnell, D. & Kornberg, R. D. (2001) Science 292, 1876-1882.
38. Ponting, C. P. (2002) Nucleic Acids Res. 30, 3643-3652.
39. Aloy, P., Bottcher, B., Ceulemans, H., Leutwein, C., Mellwig, C., Fischer, S., Gavin, A. C., Bork, P., Superti-Furga, G., Serrano, L., et al. (2004) Science 303, 2026-2029.
40. Marshall, N. F. & Price, D. H. (1992) Mol. Cell. Biol. 12, 2078-2090.
41. Marshall, N. F., Peng, J., Xie, Z. & Price, D. H. (1996) J. Biol. Chem. 271, 27176-27183.
42. Zhu, Y., Pe'ery, T., Peng, J., Ramanathan, Y., Marshall, N., Marshall, T., Amendt, B., Mathews, M. B. & Price, D. H. (1997) Genes Dev. 11, 2622-2632.
43. Ujvari, A., Pal, M. & Luse, D. S. (2002) J. Biol. Chem. 277, 32527-32537.
44. Cramer, P., Bushnell, D. & Kornberg, R. (2001) Science 292, 1863-1876.
45. Westover, K. D., Bushnell, D. A. & Kornberg, R. D. (2004) Science 303, 1014-1016.
46. Yan, Q., Moreland, R. J., Conaway, J. W. & Conaway, R. C. (1999) J. Biol. Chem. 274, 35668-35675.
47. Elmendorf, B. J., Shilatifard, A., Yan, Q., Conaway, J. W. & Conaway, R. C. (2001) J. Biol. Chem. 276, 23109-23114.
48. Zhang, C., Yan, H. & Burton, Z. F. (2003) J. Biol. Chem. 278, 50101-50111.