Quantitative modeling of chloride conductance in yeast TRK potassium transporters

Biophysical Journal

Volumn 89, Issue 4, 2005, Pages 2412-2426

  Rivetta, Alberto ^a   Slayman, Clifford ^a   Kuroda, Teruo ^b  

^a YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b OKAYAMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; FUNGAL PROTEIN; POTASSIUM; TRK PROTEIN; TRK1P PROTEIN; TRK2P PROTEIN; UNCLASSIFIED DRUG;

ACTIVATION ENERGY BARRIER; ARTICLE; CELL LEVEL; CHLORIDE CONDUCTANCE; CHLORIDE CURRENT; CHLORIDE TRANSPORT; ELECTRIC POTENTIAL; ENERGY TRANSFER; EXTRACELLULAR SPACE; KINETICS; MATHEMATICAL MODEL; MEMBRANE POTENTIAL; NONHUMAN; PATCH CLAMP; PH; PROTEIN AGGREGATION; SACCHAROMYCES CEREVISIAE; SPHEROPLAST; STEADY STATE; THICKNESS; VOLTAGE CLAMP; YEAST;

FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 25844440108     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.105.066712     Document Type: Article

References (47)

1. Sonders, M. S., and S. G. Amara. 1996. Channels in transporters. Curr. Opin. Neurobiol. 6:294-302.
2. Galli, A., R. D. Blakely, and L. J. DeFelice. 1996. Norepinephrine transporters have channel modes of conduction. Proc. Natl. Acad. Sci. USA. 93:8671-8676.
3. Arriza, J. L., S. Ellasof, M. P. Kavanaugh, and S. G. Amara. 1997. Excitatory amino acid transporter 5, a retinal glutamate transporter coupled to a chloride conductance. Proc. Natl. Acad. Sci. USA. 94:4155-4160.
4. Carvelli, L., P. W. McDonald, R. D. Blakeley, and L. J. DeFelice. 2004. Dopamine transporters depolarize neurons by a channel mechanism. Proc. Natl. Acad. Sci. USA. 101:16046-16051.
5. Su, A., S. Mager, S. L. Mayo, and H. A. Lester. 1996. A multi-substrate single-file model for ion-coupled transporters. Biophys. J. 70:762-777.
6. DeFelice, L. J., S. V. Adams, and D. L. Yprey. 2001. Single-file diffusion and neurotransmitter transporters: Hodgkin and Keynes model revisited. Biosystems. 62:57-66.
7. Ryan, R. M., A. D. Mitrovic, and R. J. Vandenberg. 2004. The chloride permeation pathway of a glutamate transporter and its proximity to the glutamate translocation pathway. J. Biol. Chem. 279:20742-20751.
8. Grunewald, M., and B. I. Kanner. 2000. The accessibility of a novel reentrant loop of the glutamate transporter GLT-1 is restricted by its substrate. J. Biol. Chem. 275:9684-9689.
9. Slotboom, J., W. N. Konings, and J. S. Lolkema. 2001. The structure of glutamate transporters shows channel-like features. FEBS Lett. 492:183-186.
10. Yernool, D., O. Boudker, and E. Gouax. 2004. Structure of a glutamate transporter homologue from Pyrococcus horikoshii. Nature. 431:811-818.
11. + conduction and selectivity. Science. 280:69-76.
12. +-channel- Fab complex at 2.0 Å resolution. Nature. 414:43-48.
13. +-uptake systems. In Transport Processes in Eukaryotic and Prokaryotic Organisms. W.N. Konings, H.R. Kaback, and J.S. Lolkema, editors. Elsevier, Amsterdam, The Netherlands. 473-500.
14. Jan, L. Y., and Y. N. Jan. 1997. Cloned potassium channels from eukaryotes and prokaryotes. Annu. Rev. Neurosci. 20:91-123.
15. + channels and symporters. Biophys. J. 77:775-788.
16. + channel. Biophys. J. 77:789-807.
17. +-uptake system KtrAB from Vibrio alginolyticus. FEBS Lett. 450:217-220.
18. + transporters. Proc. Natl. Acad. Sci. USA. 98:6488-6493.
19. Maser, P., Y. Hosoo, S. Goshima, T. Horie, B. Eckelman, K. Yamada, K. Yoshida, E. P. Bakker, A. Shinmyo, S. Oiki, J. I. Schroeder, and N. Uozumi. 2002. Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-per subunit HKT transporters from plants. Proc. Natl. Acad. Sci. USA. 99:6428-6433.
20. d helix of the TRK1 potassium transporter of Saccharomyces cerevisiae. Biochim. Biophys. Acta. 1613:1-6.
21. +-carrier, TRK2, demonstrates folding which is consistent with a channel-like structure. J. Biol. Chem. 279:3003-3013.
22. Kuroda, T., H. Bihler, E. Bashi, C. L. Slayman, and A. Rivetta. 2004. Chloride channel function in the yeast TRK-potassium transporters. J. Membr. Biol. 198:177-192.
23. Collins, K. D., and M. W. Wasabaugh. 1985. The Hofmeister effect and the behaviour of water at interfaces. Q. Rev. Biophys. 18:323-422.
24. Nicholls, P., and N. Miller. 1974. Chloride diffusion from liposomes. Biochim. Biophys. Acta. 336:184-198.
25. The, R., and W. Hasselbach. 1975. The action of chaotropic anions on the sarcoplasmic calcium pump. Eur. J. Biochem. 53:105-113.
26. Klodos, I., R. L. Post, and B. Forbush III. 1994. Kinetic heterogeneity of phosphoenzyme of Na,K-ATPase modeled by unmixed lipid phases. J. Biol. Chem. 269:1734-1743.
27. Hill, A. V., and L. MacPherson. 1954. The effect of nitrate, iodide and bromide on the duration of the active state in skeletal muscle. Proc. R. Soc. Lond. B. Biol. Sci. 143:81-102.
28. Figler, R. A., H. Omote, R. K. Nakamoto, and M. K. Al-Shawi. 2000. Use of chemical chaperones in the yeast Saccharomyces cerevisiae to enhance heterologous membrane protein expression: high-yield expression and purification of human P-glycoprotein. Arch. Biochem. Biophys. 376:34-46.
29. Bertl, A., H. Bihler, C. Kettner, and C. L. Slayman. 1998. Electrophysiology in the eukaryotic model cell Saccharomyces cerevisiae. Eur. J. Physiol. 436:999-1013.
30. +-independent current. FEBS Lett. 447:115-120.
31. Blatt, M. R., and C. L. Slayman. 1983. KCl leakage from microelectrodes and its impact on the membrane parameters of a non-excitable cell. J. Membr. Biol. 72:223-234.
32. Hohmann, S. 2002. Osmotic adaptation in yeast: control of the yeast osmolyte system. Int. Rev. Cytol. 215:149-187.
33. Hodgkin, A. L., and B. Katz. 1949. The effect of sodium ions on the electrical activity of the giant axon of the squid. J. Physiol. 108:37-77.
34. Marquardt, D. 1963. An algorithm for least-squares estimation of non-linear parameters. J. Soc. Indust. Appl. Math. 11:431-441.
35. Bertl, A., J. Ramos, J. Ludwig, H. Lichtenberg-Frate, J. Reid, H. Bihler, F. Calero, P. Martinez, and P. O. Ljungdahl. 2003. Characterization of potassium transport in wild-type and isogenic yeast strains carrying all combinations of trk1, trk2, and tok1 null mutations. Mol. Microbiol. 47:767-780.
36. Nelson, D. J., J. Ehrenfeld, and B. Lindemann. 1978. Volume changes and potential artifacts of epithelial cells of frog skin following impalement with microelectrodes filled with 3 M KCl. J. Membr. Biol. 4081:91-119.
37. Läuger, P., and G. Stark. 1970. Kinetics of carrier-mediated ion transport across lipid bilayer membranes. Biochim. Biophys. Acta. 211:458-466.
38. Hille, B. 1975. Ionic selectivity, saturation, and block in sodium channels. A four-barrier model. J. Gen. Physiol. 66:535-560.
39. Läuger, P. 1984. Thermodynamic and kinetic properties of electrogenic ion pumps. Biochim. Biophys. Acta. 779:307-341.
40. Dean, J. A. 1985. Lange's Handbook of Chemistry, 13th Ed. McGraw-Hill, New York. 3-122.
41. Hummer, G., J. C. Rasalah, and J. P. Noworyta. 2001. Water conduction through the hydrophobic channel of a carbon nanotube. Nature. 414:188-190.
42. Beckstein, O., and M. S. P. Sansom. 2003. Liquid-vapor oscillations of water in hydrophobic nanopores. Proc. Natl. Acad. Sci. USA. 100:763-768.
43. Verkman, A. S., and A. K. Mitra. 2000. Structure and function of aquaporin water channels. Am. J. Physiol. 278:F13-F28.
44. 2 permeability of Xenopus oocytes. Am. J. Physiol. Cell Physiol. 274: C543-C548.
45. Murakami, S., N. Tamura, A. Saito, T. Hirata, and A. Yamaguchi. 2004. Extramembrane central pore of multidrug exporter AcrB in Escherichia coli plays an important role in drug transport. J. Biol. Chem. 279:3743-3748.
46. Schillers, H., V. Shahin, L. Albermann, C. Schafer, and H. Oberleithner. 2004. Imaging CFTR: a tail-to-tail dimer with a central pore. Cell. Physiol. Biochem. 14:1-10.
47. Eskandari, S., M. Kreman, M. P. Kavanaugh, E. M. Wright, and G. A. Zampighi. 2000. Pentameric assembly of a neuronal glutamate transporter. Proc. Natl. Acad. Sci. USA. 97:8641-8646.