Cell microarrays

Expert Review of Molecular Diagnostics

Volumn 5, Issue 5, 2005, Pages 769-779

  Angres, Brigitte ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

3D; Antibody; Biomaterial; Cell chip; Cell microarray; Cell printing; Dielectrophoresis; Extracellular matrix; Glycan; Membrane; Nonpositional array; Peptide; Peptide MHC; Positional array; Reverse transfection; Small molecule

Indexed keywords

BIOMATERIAL; GLYCAN;

CELL MEMBRANE; CELL SURFACE; DNA MICROARRAY; EXTRACELLULAR MATRIX; GENE EXPRESSION; GENETIC TRANSFECTION; HUMAN; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; PROTEIN MICROARRAY; REVIEW;

ANIMALS; ANTIBODIES; BIOCOMPATIBLE MATERIALS; CELL MEMBRANE; CELLS; HUMANS; MICROARRAY ANALYSIS; POLYSACCHARIDES;

EID: 25144503855     PISSN: 14737159     EISSN: 17448352     Source Type: Journal    
DOI: 10.1586/14737159.5.5.769     Document Type: Review

References (72)

1. Chung CH, Bernard PS, Perou CM. Molecular portraits and the family tree of cancer. Nature Genet. 32(Suppl.), 533-540 (2002).
2. Gerhold DL, Jensen RV, Gullans SR. Better therapeutics through microarrays. Nature Genet. 32(Suppl.), 547-551 (2002).
3. Cheung VG, Spielman RS. The genetics of variation in gene expression. Nature Genet. 32(Suppl.), 522-525 (2002).
4. Chittur SV. DNA microarrays: tools for the 21st Century. Comb. Chem. High Throughput Screen. 7(6), 531-537 (2004).
5. MacBeath G, Schreiber SL. Printing proteins as microarrays for high-throughput function determination. Science 289(5485), 1760-1763 (2000).
6. Stoll D, Templin MF, Bachmann J, Joos TO. Protein microarrays: applications and future challenges. Curr. Opin. Drug Discov. Devel. 8(2), 239-252 (2005).
7. Haab BB. Advances in protein microarray technology for protein expression and interaction profiling. Curr. Opin. Drug Discov. Devel. 4(1), 116-123 (2001).
8. Lal SP, Christopherson RI, dos Remedios CG. Antibody arrays: an embryonic but rapidly growing technology. Drug Discov. Today 7(18), S143-S149 (2002).
9. Ziauddin J, Sabatini DM. Microarrays of cells expressing defined cDNAs. Nature 411(6833), 107-110 (2001). First publication to describe reverse transfection microarray technology.
10. Webb BL, Diaz B, Martin GS, Lai F. A reporter system for reverse transfection cell arrays. J. Biomol. Screen. 8, 620-623 (2003).
11. Mishina YM, Wilson CJ, Bruett L et al. Multiplex GPCR assay in reverse transfection cell microarrays. J. Biomol. Screen. 9(3), 196-207 (2004).
12. Wheeler DB, Carpenter AE, Sabatini DM. Cell microarrays and RNA interference chip away at gene function. Nature Genet. 37(Suppl.), S25-S30 (2005).
13. Conrad C, Erfle H, Warnat P et al. Automatic identification of subcellular phenotypes on human cell arrays. Genome Res. 14(6), 1130-1136 (2004).
14. Vanhecke D, Janitz M. High-throughput gene silencing using cell arrays. Oncogene 23(51), 8353-8358 (2004).
15. Erfle H, Simpson JC, Bastiaens PI, Pepperkok R. siRNA cell arrays for high-content screening microscopy. Biotechniques 37(3), 454-458, 460, 462 (2004).
16. Mousses S, Caplen NJ, Cornelison R et al. RNAi microarray analysis in cultured mammalian cells. Genome Res. 13, 2341-2347 (2003).
17. Silva JM, Mizuno H, Brady A, Lucito R, Hannon G J. RNA interference microarrays: high-throughput loss-of-function genetics in mammalian cells. Proc. Natl Acad. Sci. USA 101, 6548-6552 (2004).
18. Wheeler DB, Bailey SN, Guertin DA, Carpenter AE, Higgins CO, Sabatini DM. RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells. Nature Methods 1(2), 127-132 (2004).
19. Baghdoyan S, Roupioz Y, Pitaval A et al. Quantitative analysis of highly parallel transfection in cell microarrays. Nucleic Acids Res. 32(9), e77 (2004).
20. Carpenter AE, Sabatini DM. Systematic genome-wide screens of gene function. Nature Rev. Genet. 5(1), 11-22 (2004).
21. Kumar R, Conklin DS, Mittal V. High-throughput selection of effective RNAi probes for gene silencing. Genome Res. 13, 2333-2340 (2003).
22. Delehanty JB, Shaffer KM, Lin B. Transfected cell microarrays for the expression of membrane-displayed single-chain antibodies. Anal. Chem. 76, 7323-7328 (2004).
23. How SE, Yingyongnarongkul B, Fara MA, Diaz-Mochon JJ, Mittoo S, Bradley M. Polyplexes and lipoplexes for mammalian gene delivery: from traditional to microarray screening. Comb. Chem. High Throughput Screen. 7, 423-430 (2004).
24. Redmond TM, Ren X, Kubish G, Atkins S, Low S, Uhler MD. Microarray transfection analysis of transcriptional regulation by cAMP-dependent protein kinase. Mol. Cell. Proteomics 3, 770-779 (2004).
25. Chang FH, Lee CH, Chen MT et al. Surfection: a new platform for transfected cell arrays. Nucleic Acids Res. 32, e33 (2004).
26. Yoshikawa T, Uchimura E, Kishi M, Funeriu DP, Miyake M, Miyake J. Transfection microarray of human mesenchymal stem cells and on-chip siRNA gene knockdown. J. Control Release 96, 227-232 (2004).
27. Delehanty JB, Shaffer KM, Lin B. A comparison of microscope slide substrates for use in transfected cell microarrays. Biosens. Bioelectron. 20, 773-779 (2004).
28. Yamauchi F, Kato K, Iwata H. Spatially and temporally controlled gene transfer by electroporation into adherent cells on plasmid DNA-loaded electrodes. Nucleic Acids Res. 32, e187 (2004).
29. Szili E, Thissen H, Hayes JP, Voelcker N. A biochip platform for cell transfection assays. Biosens. Bioelectron. 19, 1395-1400 (2004).
30. Kato K, Umezawa K, Funeriu DP, Miyake M, Miyake J, Nagamune T. Immobilized culture of nonadherent cells on an oleyl poly(ethylene glycol) ether-modified surface. Biotechniques 35(5), 1014-1018, 1020-1011 (2003).
31. Kato K, Umezawa K, Miyake M, Miyake J, Nagamune T. Transfection microarray of nonadherent cells on an oleyl poly(ethylene glycol) ether-modified glass slide. Biotechniques 37(3), 444-448, 450, 452 (2004).
32. Chang TW. Binding of cells to matrixes of distinct antibodies coated on solid surface. J. Immunol. Methods 65(1-2), 217-223 (1983).
33. Liu AY. Differential expression of cell surface molecules in prostate cancer cells. Cancer Res. 60(13), 3429-3434 (2000).
34. Belov L, de la Vega O, dos Remedios CG, Mulligan SP, Christopherson RI. Immunophenotyping of leukemias using a cluster of differentiation antibody microarray. Cancer Res. 61(11), 4483-4489 (2001).
35. Belov L, Huang P, Barber N, Mulligan SP, Christopherson RI. Identification of repertoires of surface antigens on leukemias using an antibody microarray. Proteomics 3(11), 2147-2154 (2003). Evaluation of antibody-based cell microarrays for diagnosis of leukemias.
36. Ko IK, Kato K, Iwata H. Antibody microarray for correlating cell phenotype with surface marker. Biomaterials 26(6), 687-696 (2005).
37. Hoff A, Andre T, Schaffer TE, Jung G, Wiesmuller KH, Brock R. Lipoconjugates for the noncovalent generation of microarrays in biochemical and cellular assays. Chembiochem 3(12), 1183-1191 (2002).
38. Soen Y, Chen DS, Kraft DL, Davis MM, Brown PO. Detection and characterization of cellular immune responses using peptide-MHC microarrays. PLoS Biol. 1(3), E65 (2003). Evaluates the use of peptide-major histocompatibility complex (MHC) microarrays for characterization and analysis of multiple epitope-specific T-cell populations.
39. Fukui S, Feizi T, Galustian C, Lawson AM, Chai W. Oligosaccharide microarrays for high-throughput detection and specificity assignments of carbohydrate-protein interactions. Nature Biotechnol. 20(10), 1011-1017 (2002).
40. Blixt O, Head S, Mondala T et al. Printed covalent glycan array for ligand profiling of diverse glycan binding proteins. Proc. Natl Acad. Sci. USA 101(49), 17033-17038 (2004).
41. Nimrichter L, Gargir A, Gortler M et al. Intact cell adhesion to glycan microarrays. Glycobiology 14(2), 197-203 (2004). First publication of glycan microarrays used to identify glycan-specific cell adhesion.
42. Flaim CJ, Chien C, Bhatia SN. An extracellular matrix microarray for probing cellular differentiation. Nature Methods 2(2), 119-125 (2005). First publication of extracellular matrix (ECM) protein microarrays used to identify ECM-dependent cell differentiation.
43. Angres B, Kuschel C, Steuer H. Multiple Substrate Array, MSA™: miniaturized screening of extracellular matrix-dependent cell behaviour. European Cell. Mater. 7(Suppl. 1), 40 (2004).
44. Anderson DG, Levenberg S, Langer R. Nanoliter-scale synthesis of arrayed biomaterials and application to human embryonic stem cells. Nature Biotechnol. 22(7), 863-866 (2004). Technically very demanding fabrication of microarrays carrying acrylate polymers.
45. Sackmann E. Supported membranes: scientific and practical applications. Science 271(5245), 43-48 (1996).
46. Hovis JS, Boxer SG. Patterning and composition arrays of supported lipid bilayers by microcontact printing. Langmuir 17(11), 3400-3405 (2001).
47. Groves JT, Mahal LK, Bertozzi CR. Control of cell adhesion and growth with micropatterned supported lipid membranes. Langmuir 17(17), 5129-5133 (2001). Arrays of supported lipid membranes were used to characterize cell adhesion to a range of lipid compositions and charge densities.
48. Hodder P, Mull R, Cassaday J, Berry K, Strulovici B. Miniaturization of intracellular calcium functional assays to 1536-well plate format using a fluorometric imaging plate reader. J. Biomol. Screen. 9(5), 417-426 (2004).
49. Pennington ME, Lam KS, Cress AE. The use of a combinatorial library method to isolate human tumor cell adhesion peptides. Mol. Divers. 2(1-2), 19-28 (1996).
50. Falsey JR, Renil M, Park S, Li S, Lam KS. Peptide and small molecule microarray for high-throughput cell adhesion and functional assays. Bioconjug. Chem. 12(3), 346-353 (2001). Demonstrates how peptide arrays can be used to screen for peptides inducing cellular responses
51. Xu Q, Miyamoto S, Lam KS. A novel approach to chemical microarray using ketone-modified macromolecular scaffolds: application in micro cell-adhesion assay. Mol. Divers. 8(3), 301-310 (2004).
52. Song A, Wang X, Zhang J, Marik J, Lebrilla CB, Lam KS. Synthesis of hydrophilic and flexible linkers for peptide derivatization in solid-phase. Bioorg. Med. Chem. Lett. 14(1), 161-165 (2004).
53. Hoff A, Andre T, Fischer R et al. Chemolabile cellular microarrays for screening small molecules and peptides. Mol. Divers. 8(3), 311-320 (2004). Demonstrates the use of peptide arrays in characterizing peptide-cell interactions including the determination of functional cell signaling.
54. Bailey SN, Sabatini DM, Stockwell BR. Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens. Proc. Natl Acad. Sci. USA 101(46), 16144-16149 (2004).
55. Stephan JP, Schanz S, Wong A, Schow P, Wong WL. Development of a frozen cell array as a high-throughput approach for cell-based analysis. Am. J. Pathol. 161(3), 787-797 (2002). Simple method to rapidly screen large collections of cells with antibodies, ligands or DNA and RNA probes.
56. Oode K, Furuya T, Harada K et al. The development of a cell array and its combination with laser-scanning cytometry allows a high-throughput analysis of nuclear DNA content. Am. J. Pathol. 157(3), 723-728 (2000).
57. Takita M, Furuya T, Sugita T et al. An analysis of changes in the expression of cyclins A and B1 by the cell array system during the cell cycle: comparison between cell synchronization methods. Cytometry A 55(1), 24-29 (2003). Cell arrays have been combined with laser scanning cytometry for quantitative imaging.
58. Schwenk JM, Stoll D, Templin MF, Joos TO. Cell microarrays: an emerging technology for the characterization of antibodies. Biotechniques (Suppl.), 54-61 (2002).
59. Wilson WC Jr, Boland T. Cell and organ printing 1: protein and cell printers. Anat. Rec. A. Discov. Mol. Cell. Evol. Biol. 272(2), 491-496 (2003). An ink-jet printer was modified for live cell printing.
60. Xu T, Jin J, Gregory C, Hickman JJ, Boland T. Inkjet printing of viable mammalian cells. Biomaterials 26(1), 93-99 (2005).
61. Kapur R, Giuliano KA, Campana M et al. Streamlining the drug discovery process by integrating miniaturization, high-throughput screening, high content screening, and automation on the CellChip™ system. Biomed. Microdevices 2(2), 99-109 (1999).
62. Pethig R. Dielectrophoresis: using inhomogenous AC electrical fields to separate and manipulate cells. Crit. Rev. Biotechnol. 16(4), 331-348 (1996).
63. Gray DS, Tan JL, Voldman J, Chen CS. Dielectrophoretic registration of living cells to a microelectrode array. Biosens. Bioelectron. 19(7), 771-780 (2004).
64. Huang Y, Joo S, Duhon M, Heller M, Wallace B, Xu X. Dielectrophoretic cell separation and gene expression profiling on microelectronic chip arrays. Anal. Chem. 74, 3362-3371 (2002).
65. Albrecht DR, Tsang VL, Sah RL, Bhatia SN. Photo- and electropatterning of hydrogel-encapsulated living cell arrays. Lab. Chip 5(1), 111-118 (2005). Describes the first 3D cell microarray.
66. Beske O, Guo J, Li J et al. A novel encoded particle technology that enables simultaneous interrogation of multiple cell types. J. Biomol. Screen. 9(3), 173-185 (2004). Describes a nonpositional cell array applicable for drug screening.
67. Watson A, Wu X, Bruchez M. Lighting up cells with quantum dots. Biotechniques 34(2), 296-300, 302-293 (2003).
68. Smith AM, Gao X, Nie S. Quantum-dot nanocrystals for in vivo molecular and cellular imaging. Photochem. Photobiol. 80(3), 377-385 (2004).
69. Mattheakis LC, Dias JM, Choi YJ et al. Optical coding of mammalian cells using semiconductor quantum dots. Anal. Biochem. 327(2), 200-208 (2004).
70. Ruckstuhl T, Walser A, Verdes D, Seeger S. Confocal reader for biochip screening and fluorescence microscopy. Biosens. Bioelectron. 20, 1872-1877 (2005).
71. Furuya T, Takita M, Tsunoda S et al. Cell array coupled with laser scanning cytometry allows easy analysis of changes in cyclin expression during the cell cycle. An application of cell array system. Methods Cell. Sci. 24, 41-47 (2002).
72. Edwards BS, Oprea T, Prossnitz ER, Sklar LA. Flow cytometry for high-throughput, high-content screening. Curr. Opin. Chem. Biol. 8(4), 392-398 (2004).