-
1
-
-
0028154142
-
Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico
-
Arévalo, E., Davis, S.K., Sites Jr., J.W., 1994. Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Syst. Biol. 43, 387-418.
-
(1994)
Syst. Biol.
, vol.43
, pp. 387-418
-
-
Arévalo, E.1
Davis, S.K.2
Sites Jr., J.W.3
-
2
-
-
0035527385
-
Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae)
-
Baker, R.H., Wilkinson, G.S., DeSalle, R., 2001. Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae). Syst. Biol. 50, 87-105.
-
(2001)
Syst. Biol.
, vol.50
, pp. 87-105
-
-
Baker, R.H.1
Wilkinson, G.S.2
DeSalle, R.3
-
3
-
-
0032088099
-
Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees
-
Baker, R.H., Yu, X., DeSalle, R., 1998. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Mol. Phylogenet. Evol. 9, 427-436.
-
(1998)
Mol. Phylogenet. Evol.
, vol.9
, pp. 427-436
-
-
Baker, R.H.1
Yu, X.2
DeSalle, R.3
-
4
-
-
43949160320
-
Branch support and tree stability
-
Bremer, K., 1994. Branch support and tree stability. Cladistics 10, 295-304.
-
(1994)
Cladistics
, vol.10
, pp. 295-304
-
-
Bremer, K.1
-
5
-
-
12044257391
-
Partitioning and combining data in phylogenetic analysis
-
Bull, J.J., Huelsenbeck, J.P., Cunningham, C.W., Swofford, D.L., Waddell, P.J., 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42, 384-397.
-
(1993)
Syst. Biol.
, vol.42
, pp. 384-397
-
-
Bull, J.J.1
Huelsenbeck, J.P.2
Cunningham, C.W.3
Swofford, D.L.4
Waddell, P.J.5
-
6
-
-
12044258419
-
Weighting, partitioning, and combining characters in phylogenetic analysis
-
Chippindale, P.T., Wiens, J.J., 1994. Weighting, partitioning, and combining characters in phylogenetic analysis. Syst. Biol. 43, 278-287.
-
(1994)
Syst. Biol.
, vol.43
, pp. 278-287
-
-
Chippindale, P.T.1
Wiens, J.J.2
-
7
-
-
0001546577
-
Separate versus combined analysis of phylogenetic evidence
-
de Queiroz, A., Donoghue, M.J., Kim, J., 1995. Separate versus combined analysis of phylogenetic evidence. Annu. Rev. Ecol. Syst. 26, 657-681.
-
(1995)
Annu. Rev. Ecol. Syst.
, vol.26
, pp. 657-681
-
-
De Queiroz, A.1
Donoghue, M.J.2
Kim, J.3
-
8
-
-
0000418006
-
A phylogeny of Iguanidae
-
Estes, R., Pregill, G. (Eds.), Stanford Univ. Press, Stanford
-
Etheridge, R., de Queiroz, K., 1988. A phylogeny of Iguanidae. In: Estes, R., Pregill, G. (Eds.), Phylogenetic Relationships of Lizard Families: Essays Commemorating Charles L. Camp. Stanford Univ. Press, Stanford, pp. 283-368.
-
(1988)
Phylogenetic Relationships of Lizard Families: Essays Commemorating Charles L. Camp
, pp. 283-368
-
-
Etheridge, R.1
De Queiroz, K.2
-
9
-
-
0000461280
-
Confidence limits on phylogeny: An approach using the bootstrap
-
Felsenstein, J., 1985. Confidence limits on phylogeny: an approach using the bootstrap. Evolution 39, 783-789.
-
(1985)
Evolution
, vol.39
, pp. 783-789
-
-
Felsenstein, J.1
-
10
-
-
0034351396
-
Multiple data sets, congruence and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata, Phrynosomatidae)
-
Flores-Villela, O., Kjer, K.M., Benabib, M., Sites Jr., J.W., 2000. Multiple data sets, congruence and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata, Phrynosomatidae). Syst. Biol. 49, 713-739.
-
(2000)
Syst. Biol.
, vol.49
, pp. 713-739
-
-
Flores-Villela, O.1
Kjer, K.M.2
Benabib, M.3
Sites Jr., J.W.4
-
11
-
-
0002069577
-
A phylogenetic analysis and taxonomy of Iguanian lizards (Reptilia: Squamata)
-
Frost, D.R., Etheridge, R., 1989. A phylogenetic analysis and taxonomy of Iguanian lizards (Reptilia: Squamata). Univ. Kansas Mus. Nat. Hist. Miscel. Publ. 81, 1-65.
-
(1989)
Univ. Kansas Mus. Nat. Hist. Miscel. Publ.
, vol.81
, pp. 1-65
-
-
Frost, D.R.1
Etheridge, R.2
-
12
-
-
0035543121
-
Phylogenetics of the lizards genus Tropidurus (Squamata: Tropiduridae: Tropidurinae): Direct optimization, descriptive efficiency and sensitivity analysis of congruence between molecular data and morphology
-
Frost, D.R., Rodriques, M.T., Grant, T., Titus, T.A., 2001. Phylogenetics of the lizards genus Tropidurus (Squamata: Tropiduridae: Tropidurinae): direct optimization, descriptive efficiency and sensitivity analysis of congruence between molecular data and morphology. Mol. Phylogenet. Evol. 21, 352-371.
-
(2001)
Mol. Phylogenet. Evol.
, vol.21
, pp. 352-371
-
-
Frost, D.R.1
Rodriques, M.T.2
Grant, T.3
Titus, T.A.4
-
13
-
-
0027616543
-
Alignment-ambiguous nucleotide sites and the exclusion of systematic data
-
Gatesy, J., DeSalle, R., Wheeler, W., 1993. Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Mol. Phylogenet. Evol. 2, 152-157.
-
(1993)
Mol. Phylogenet. Evol.
, vol.2
, pp. 152-157
-
-
Gatesy, J.1
DeSalle, R.2
Wheeler, W.3
-
14
-
-
0034351387
-
Likelihood-based tests of topologies in phylogenetics
-
Goldman, N., Anderson, J.P., Rodrigo, A.G., 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49, 652-670.
-
(2000)
Syst. Biol.
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
15
-
-
0027665678
-
The phylogenetic utility of cytochrome b: Lessons from bufonid frogs
-
Graybeal, A., 1993. The phylogenetic utility of cytochrome b: lessons from bufonid frogs. Mol. Phylogenet. Evol. 2, 256-269.
-
(1993)
Mol. Phylogenet. Evol.
, vol.2
, pp. 256-269
-
-
Graybeal, A.1
-
16
-
-
0032969991
-
Multiple substitutions affect the phylogenetic utility of cytochrome b and 12S rDNA data: Examining a rapid radiation in leporid (Lagomorpha) evolution
-
Halanych, K.M., Robinson, T.J., 1999. Multiple substitutions affect the phylogenetic utility of cytochrome b and 12S rDNA data: examining a rapid radiation in leporid (Lagomorpha) evolution. J. Mol. Evol. 48, 369-379.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 369-379
-
-
Halanych, K.M.1
Robinson, T.J.2
-
17
-
-
0002173457
-
Temperature regulation and diurnal activity in horned lizards
-
Heath, J.E., 1964. Temperature regulation and diurnal activity in horned lizards. Univ. California Publ. Zool. 64, 97-136.
-
(1964)
Univ. California Publ. Zool.
, vol.64
, pp. 97-136
-
-
Heath, J.E.1
-
18
-
-
0002063701
-
Discriminating between phylogenetic signal and random noise in DNA sequences
-
Miyamoto, M.M., Cracraft, J. (Eds.), Oxford Univ. Press, Oxford
-
Hillis, D.M., 1991. Discriminating between phylogenetic signal and random noise in DNA sequences. In: Miyamoto, M.M., Cracraft, J. (Eds.), Phylogenetic Analysis of DNA Sequences. Oxford Univ. Press, Oxford.
-
(1991)
Phylogenetic Analysis of DNA Sequences
-
-
Hillis, D.M.1
-
19
-
-
12044253190
-
An empirical test of boot strapping as a method for assessing confidence in phylogenetic analysis
-
Hillis, D.M., Bull, J.J., 1993. An empirical test of boot strapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42, 182-192.
-
(1993)
Syst. Biol.
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
20
-
-
0027055554
-
Signal, noise, and reliability in molecular phylogenetic analysis
-
Hillis, D.M., Huelsenbeck, J.P., 1992. Signal, noise, and reliability in molecular phylogenetic analysis. J. Heredity 83, 189-195.
-
(1992)
J. Heredity
, vol.83
, pp. 189-195
-
-
Hillis, D.M.1
Huelsenbeck, J.P.2
-
21
-
-
0003671904
-
-
Sinauer Associates, Inc, Sunderland, MA
-
Hillis, D.M., Moritz, C., Mable, B.K., 1996. Molecular Systematics, second ed. Sinauer Associates, Inc, Sunderland, MA.
-
(1996)
Molecular Systematics, Second Ed.
-
-
Hillis, D.M.1
Moritz, C.2
Mable, B.K.3
-
23
-
-
0000238015
-
Comparative reproductive ecology of horned lizards (Genus Phrynosoma) in southwestern United States and northern Mexico
-
Howard, C.W., 1974. Comparative reproductive ecology of horned lizards (Genus Phrynosoma) in southwestern United States and northern Mexico. J. Arizona Acad. Sci. 9, 108-116.
-
(1974)
J. Arizona Acad. Sci.
, vol.9
, pp. 108-116
-
-
Howard, C.W.1
-
24
-
-
84960557134
-
Tree-length distribution skewness: An indicator of phylogenetic information
-
Huelsenbeck, J.P., 1991. Tree-length distribution skewness: an indicator of phylogenetic information. Syst. Zool. 3, 257-270.
-
(1991)
Syst. Zool.
, vol.3
, pp. 257-270
-
-
Huelsenbeck, J.P.1
-
25
-
-
0029751363
-
Combining data in phylogenetic analysis
-
Huelsenbeck, J.P., Bull, J.J., Cunningham, C.W., 1996. Combining data in phylogenetic analysis. Trends Ecol. Evol. 11, 152-158.
-
(1996)
Trends Ecol. Evol.
, vol.11
, pp. 152-158
-
-
Huelsenbeck, J.P.1
Bull, J.J.2
Cunningham, C.W.3
-
26
-
-
0035527379
-
Molecular and morphological phylogenetic analysis of an insular radiation in Pacific black flies (Simulium)
-
Joy, D.A., Conn, J.E., 2001. Molecular and morphological phylogenetic analysis of an insular radiation in Pacific black flies (Simulium). Syst. Biol. 50, 18-38.
-
(2001)
Syst. Biol.
, vol.50
, pp. 18-38
-
-
Joy, D.A.1
Conn, J.E.2
-
27
-
-
0003766436
-
-
Sinauer Associates, Sunderland, MA
-
Maddison, W.P., Maddison, D.R., 1992. MacClade: Analysis of Phytogeny and Character Evolution. Version 3.08a. Sinauer Associates, Sunderland, MA.
-
(1992)
MacClade: Analysis of Phytogeny and Character Evolution. Version 3.08a
-
-
Maddison, W.P.1
Maddison, D.R.2
-
28
-
-
0025016253
-
Origin of tetrapods inferred from their mitochondrial DNA affiliation to lungfish
-
Meyer, A., Wilson, A.C., 1990. Origin of tetrapods inferred from their mitochondrial DNA affiliation to lungfish. J. Mol. Evol. 31, 359-364.
-
(1990)
J. Mol. Evol.
, vol.31
, pp. 359-364
-
-
Meyer, A.1
Wilson, A.C.2
-
29
-
-
11944269526
-
Testing species phylogenies and phylogenetic methods with congruence
-
Miyamoto, M.M., Fitch, W.M., 1995. Testing species phylogenies and phylogenetic methods with congruence. Syst. Biol. 44, 64-76.
-
(1995)
Syst. Biol.
, vol.44
, pp. 64-76
-
-
Miyamoto, M.M.1
Fitch, W.M.2
-
30
-
-
3343002484
-
Taxonomic congruence
-
Mickevich, M.F., 1978. Taxonomic congruence. Syst. Tool. 27, 143-158.
-
(1978)
Syst. Tool.
, vol.27
, pp. 143-158
-
-
Mickevich, M.F.1
-
31
-
-
0002483638
-
A phylogenetic study of the horned lizard genus, Phrynosoma, based on skeletal and external morphology. Contrib
-
Montanucci, R.R., 1987. A phylogenetic study of the horned lizard genus, Phrynosoma, based on skeletal and external morphology. Contrib. Sci. Nat. Hist. Mus. Los Angeles Co. 113, 1-26.
-
(1987)
Sci. Nat. Hist. Mus. Los Angeles Co.
, vol.113
, pp. 1-26
-
-
Montanucci, R.R.1
-
32
-
-
0002404090
-
The relationship of morphology to diet in the horned lizard genus Phrynosoma
-
Montanucci, R.R., 1989. The relationship of morphology to diet in the horned lizard genus Phrynosoma. Herpetologica 45, 208-216.
-
(1989)
Herpetologica
, vol.45
, pp. 208-216
-
-
Montanucci, R.R.1
-
33
-
-
0032514671
-
The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small
-
Nei, M., Kumar, S., Takahashi, K., 1998. The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small. Proc. Natl. Acad. Sci. USA 95, 12390-12397.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12390-12397
-
-
Nei, M.1
Kumar, S.2
Takahashi, K.3
-
34
-
-
0035669123
-
A molecular perspective on the evolution of microteiid lizards (Squamata, Gymnophthalmidae), and a new classification for the family
-
Pellegrino, K.C.M., Rodrigues, M.T., Yonenaga-Yassuda, Y., Sites Jr., J.W., 2001. A molecular perspective on the evolution of microteiid lizards (Squamata, Gymnophthalmidae), and a new classification for the family. Biol. J. Linnean Soc. 74, 315-338.
-
(2001)
Biol. J. Linnean Soc.
, vol.74
, pp. 315-338
-
-
Pellegrino, K.C.M.1
Rodrigues, M.T.2
Yonenaga-Yassuda, Y.3
Sites Jr., J.W.4
-
35
-
-
0000473791
-
Ecology of horned lizards: A review with special reference to Phrynosoma platyrhinos
-
Pianka, E.R., Parker, W.S., 1975. Ecology of horned lizards: a review with special reference to Phrynosoma platyrhinos. Copeia 1975, 141-162.
-
(1975)
Copeia
, vol.1975
, pp. 141-162
-
-
Pianka, E.R.1
Parker, W.S.2
-
36
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
37
-
-
0000960846
-
Evolutionary osteology and relationships of the horned lizards genus Phrynosoma (family Iguanidae)
-
Presch, W., 1969. Evolutionary osteology and relationships of the horned lizards genus Phrynosoma (family Iguanidae). Copeia 1969, 250-275.
-
(1969)
Copeia
, vol.1969
, pp. 250-275
-
-
Presch, W.1
-
39
-
-
0030928378
-
Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
Rambaut, A., Grassly, N.C., 1997. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13, 235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
-
40
-
-
0029314481
-
Phylogenetic relationships among Phrynosomatid lizards as inferred from mitochondrial ribosomal DNA sequences: Substitutional bias and information content of transition relative to transversion
-
Reeder, T.W., 1995. Phylogenetic relationships among Phrynosomatid lizards as inferred from mitochondrial ribosomal DNA sequences: substitutional bias and information content of transition relative to transversion. Mol. Phylogenet. Evol. 4, 203-222.
-
(1995)
Mol. Phylogenet. Evol.
, vol.4
, pp. 203-222
-
-
Reeder, T.W.1
-
41
-
-
0035340914
-
Phylogenetic analysis of the horned lizards (Phrynosomatidae: Phrynosoma): Evidence from mitochondrial DNA and morphology
-
Reeder, T.W., Montanucci, R.R., 2001. Phylogenetic analysis of the horned lizards (Phrynosomatidae: Phrynosoma): evidence from mitochondrial DNA and morphology. Copeia 2001, 309-323.
-
(2001)
Copeia
, vol.2001
, pp. 309-323
-
-
Reeder, T.W.1
Montanucci, R.R.2
-
42
-
-
0001995326
-
Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data
-
Reeder, T.W., Wiens, J.J., 1996. Evolution of the lizard family Phrynosomatidae as inferred from diverse types of data. Herpetol. Monog. 10, 43-84.
-
(1996)
Herpetol. Monog.
, vol.10
, pp. 43-84
-
-
Reeder, T.W.1
Wiens, J.J.2
-
43
-
-
0000571242
-
Taxonomy and distribution of the horned lizard genus Phrynosoma
-
Reeve, W.L., 1952. Taxonomy and distribution of the horned lizard genus Phrynosoma. Univ. Kansas Sci. Bull. 34, 817-960.
-
(1952)
Univ. Kansas Sci. Bull.
, vol.34
, pp. 817-960
-
-
Reeve, W.L.1
-
44
-
-
0035924566
-
Blood-squirting variability in horned lizards (Phrynosoma)
-
Sherbrooke, W.C., Middendorf III, G.A., 2001. Blood-squirting variability in horned lizards (Phrynosoma). Copeia 2001, 1114-1122.
-
(2001)
Copeia
, vol.2001
, pp. 1114-1122
-
-
Sherbrooke, W.C.1
Middendorf III, G.A.2
-
46
-
-
0035527378
-
Incongruence of mitochondrial and nuclear gene trees in the carabid beetles Ohomopterus
-
Sota, T., Vogler, A.P., 2001. Incongruence of mitochondrial and nuclear gene trees in the carabid beetles Ohomopterus. Syst. Biol. 50, 39-59.
-
(2001)
Syst. Biol.
, vol.50
, pp. 39-59
-
-
Sota, T.1
Vogler, A.P.2
-
48
-
-
0027968068
-
Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., Gibson, T.J., 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
49
-
-
0035729499
-
The Coachella Valley fringe-toed lizard (Uma inornata): Genetic diversity and phylogenetic relationships of an endangered species
-
Trépanier, T.L., Murphy, R.W., 2001. The Coachella Valley fringe-toed lizard (Uma inornata): genetic diversity and phylogenetic relationships of an endangered species. Mol. Phylogenet. Evol. 18, 327-334.
-
(2001)
Mol. Phylogenet. Evol.
, vol.18
, pp. 327-334
-
-
Trépanier, T.L.1
Murphy, R.W.2
-
50
-
-
0025923821
-
Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
-
Walsh, S.P., Metzger, D.A., Higuchi, R., 1991. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10, 506-513.
-
(1991)
Biotechniques
, vol.10
, pp. 506-513
-
-
Walsh, S.P.1
Metzger, D.A.2
Higuchi, R.3
-
51
-
-
33749951044
-
The outgroup comparison method of character analysis
-
Watrous, L.E., Wheeler, Q.D., 1981. The outgroup comparison method of character analysis. Syst. Tool. 30, 1-11.
-
(1981)
Syst. Tool.
, vol.30
, pp. 1-11
-
-
Watrous, L.E.1
Wheeler, Q.D.2
-
52
-
-
0032226105
-
Combining data sets with differential phylogenetic histories
-
Wiens, J.J., 1998. Combining data sets with differential phylogenetic histories. Syst. Biol. 47, 568-681.
-
(1998)
Syst. Biol.
, vol.47
, pp. 568-681
-
-
Wiens, J.J.1
-
53
-
-
0029067458
-
Evaluation of several methods for estimating phylogenetic trees when substitution rates differ over nucleotide sites
-
Yang, Z., 1995. Evaluation of several methods for estimating phylogenetic trees when substitution rates differ over nucleotide sites. J. Mol. Evol. 40, 689-697.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 689-697
-
-
Yang, Z.1
-
54
-
-
0032028624
-
On the best evolutionary rate for phylogenetic analysis
-
Yang, Z., 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47, 125-133.
-
(1998)
Syst. Biol.
, vol.47
, pp. 125-133
-
-
Yang, Z.1
-
55
-
-
0031153860
-
Molecular systematics of the short-horned lizards: Biogeography and taxonomy of a widespread species complex
-
Zamudio, K.R., Jones, K.B., Ward, R.H., 1997. Molecular systematics of the short-horned lizards: biogeography and taxonomy of a widespread species complex. Syst. Biol. 46, 284-305.
-
(1997)
Syst. Biol.
, vol.46
, pp. 284-305
-
-
Zamudio, K.R.1
Jones, K.B.2
Ward, R.H.3
-
56
-
-
0033976105
-
Reproductive mode and female reproductive cycles of two endemic Mexican horned lizards (Phrynosoma taurus and Phrynosoma braconnieri)
-
Zamudio, K.R., Parra-Olea, G., 2000. Reproductive mode and female reproductive cycles of two endemic Mexican horned lizards (Phrynosoma taurus and Phrynosoma braconnieri). Copeia 2000, 222-229.
-
(2000)
Copeia
, vol.2000
, pp. 222-229
-
-
Zamudio, K.R.1
Parra-Olea, G.2
|