Molecular and morphological phylogenetic analysis of an insular radiation in Pacific black flies (Simulium)

Systematic Biology

Volumn 50, Issue 1, 2001, Pages 18-38

  Joy, Deirdre A ^a   Conn, Jan E ^a  

^a UNIVERSITY OF VERMONT   (United States)

Author keywords

Black flies; Combined data analysis; Insular radiation; Molecular systematics; Simuliidae

Indexed keywords

CYTOCHROME C OXIDASE; DNA; RIBOSOME RNA; RNA, RIBOSOMAL, 12S;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; BIOMETRY; CLASSIFICATION; COMPARATIVE STUDY; ECOSYSTEM; ENZYMOLOGY; FLY; GENE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYNESIA; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

ANIMALS; BASE SEQUENCE; BIOMETRY; DNA; ECOSYSTEM; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; GENES, INSECT; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; POLYNESIA; RNA, RIBOSOMAL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SIMULIIDAE;

EID: 0035527379     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/106351501750107431     Document Type: Article

References (59)

1. BAKER, R. H., AND R. DESALLE. 1997. Multiple sources of molecular characters and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46:654-673.
2. BAKER, R. H., X. YU, AND R. DESALLE. 1998. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Mol. Phylogenet. Evol. 9:427-436.
3. BREMER, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42:795-803.
4. BREMER, K. 1994. Branch support and tree stability. Cladistics 10:295-304.
5. BRUNTON, F. A., AND G. D. D. HURST. 1998. Mitochondrial DNA phylogeny of Brimstone butterflies (genus Gonepteryx) from the Canary Islands and Madeira. Biol. J. Linn. Soc. 63:69-79.
6. BULL, J. J., J. P. HUELSENBECK, C. W. CUNNINGHAM, D. L. SWOFFORD, and P. J. WADDELL. 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42:384-397.
7. CANNATELLA, D. C., D. M. HILLIS, P. T. CHIPPINDALE, L. WEIGT, A. S. RAND, AND M. J. RYAN. 1998. Phylogeny of frogs of the Physalaemus pustulosus species group, with an examination of data incongruence. Syst. Biol. 47:311-335.
8. CARSON, H. L. 1983. Chromosomal sequences and inter-island colonizations in Hawaiian Drosophila. Genetics 103:465-482.
9. CARSON, H. L., AND D. A. CLAGUE. 1995. Geology and biogeography of the Hawaiian Islands. Pages 14-29 in Hawaiian biogeography: Evolution on a hotspot archipelago (W. L. Wagner and V. A. Funk, eds.). Smithsonian Institution Press, Washington, D.C.
10. CARSON, H. L., AND A. R. TEMPLETON. 1984. Genetic revolutions in relation to speciation phenomena: The founding of new populations. Annu. Rev. Ecol. Syst. 15:97-131.
11. CATERINO, M. S., AND F. A. H. SPERLING. 1999. Papilio phylogeny based on mitochondrial cytochrome oxidase I and II genes. Mol. Phylogenet. Evol. 11:122-137.
12. CHIPPINDALE, P. T., AND J. J. WEINS. 1994. Weighting, partitioning, and combining characters in phylogenetic analysis. Syst. Biol. 43:278-287.
13. COLLINS, F. H., M. A. MENDEZ, M. O. RASMUSSEN, P. C. MEHAFFY, N. J. BESANSKY, AND V. FINNERTY. 1987. A ribosomal probe differentiates member species of the Anopheles gambiae complex. Am. J. Trop. Med. Hyg. 37:37-41.
14. CRAIG, D. A. 1974. The labrum and cephalic fans of larval Simuliidae (Diptera: Nematocera). Can. J. Zool. 52:133-159.
15. CRAIG, D. A. 1977. Mouthparts and feeding behaviour of Tahitian larval Simuliidae (Diptera; Nematocera). Quaest. Entomol. 13:195-218.
16. CRAIG, D. A. 1987. A taxonomic account of the black flies (Diptera: Simuliidae) of the Society Islands - Tahiti, Moorea, and Raiatea. Quaest. Entomol. 23:372-429.
17. CRAIG, D. A. 1997. A taxonomic revision of the Pacific black fly subgenus Inseliellum (Diptera: Simuliidae). Can. J. Zool. 75:855-904.
18. CRAIG, D. A., AND D. C. CURRIE. 1999. Phylogeny of the Central-Western Pacific subgenus Inseliellum (Diptera: Simuliidae). Can. J. Zool. 77:610-623.
19. CROSSKEY, R. W. 1990. The natural history of black flies. Pages 361-384. John Wiley and Sons, Chichester, U.K.
20. CUNNINGHAM, C. W. 1997. Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14:733-740.
21. CURRIE, D. C., AND D. A. CRAIG. 1988. Larval feeding strategies. Pages 155-170 in Black flies: Ecology, population management, and annotated world list (K. C. Kim and R. W. Merritt, eds.). Pennsylvania State Univ., University Park.
22. DE QUEIROZ, A. 1993. For consensus (sometimes). Syst. Biol. 42:368-372.
23. DE QUEIROZ, A., M. J. DONOGHUE, AND J. KIM. 1995. Separate versus combined analysis of phylogenetic evidence. Annu. Rev. Ecol. Syst. 26:57-68.
24. DOYLE, J. J. 1992. Gene trees and species trees: Molecular systematics as one-character taxonomy. Syst. Bot. 17:144-163.
25. DUNCAN, R. A., AND I. MCDOUGAL. 1976. Linear volcanism in French Polynesia. Volcanic Geotherm. Res. 1:197-227.
26. DUNCAN, R. A., M. R. FISK, AND W. M. WHITE. 1994. Tahiti: Geochemical evolution of a French Polynesian volcano. J. Geophys. Res. 99:24341-24357.
27. ERIKSSON, T. 1998. AutoDecay ver. 4.0.1 (program distributed by the author). Dept. of Botany, Stockholm Univ. Stockholm.
28. ERWIN, T. L. 1985. The taxon pulse: A general pattern of lineage radiation and extinction among carabid beetles. Pages 437-472 in Taxonomy, phylogeny, and zoogeography in beetles and ants (G. E. Ball, ed.). W. Junk, Dordrecht, The Netherlands.
29. FARRIS, J. S., M. KÄLLERSJÖ, A. G. KLUGE, AND C. BULT. 1995. Constructing a significance test for incongruence. Syst. Biol. 44:570-572.
30. FELSENSTEIN, J. 1978. Cases in which parsimony and compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
31. FELSENSTEIN, J. 1985. Confidence limits of phylogenies: An approach using the bootstrap.Evolution 39:783-791.
32. GIVINISH, T. J., AND K. J. SYTSMA. 1997. Homoplasy in molecular vs. morphological data: The likelihood of correct phylogenetic inference. Pages 55-101 in Molecular evolution and adaptive radiation (T. J. Givnish and K. J. Sytsma, eds.). Cambridge Univ. Press, Cambridge.
33. GU, X., Y.-X. FU, AND W.-H. LI. 1995. Maximum likelihood estimation of the heterogeneity of substitution rate anmong nucleotide sites. Mol. Biol. Evol. 12:546-557.
34. HASAWEGA, M., H. KISHINO, AND T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
35. HUELSENBECK, J. P., AND B. RANNALA. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276:227-232.
36. JACKMAN, T., A. LARSON, K. DE QUEIROZ, AND J. B. LOSOS. 1999. Phylogenetic relationships and tempo of early diversification in Anolis lizards. Syst. Biol. 48:254-285.
37. JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. Pages 21-132 in Mammalian protein metabolism (H. N. Munro, ed.). Academic Press, New York.
38. KAMBYSELLIS, M. P., AND E. M. CRADDOCK. 1997. Ecological and reproductive shifts in the diversification of the endemic Hawaiian Drosophila. Pages 475-509 in Molecular evolution and adaptive radiation (T. J. Givnish and K. J. Sytsma, eds.). Cambridge Univ. Press, Cambridge.
39. KANESHIRO, K. Y. 1983. Sexual selection and direction of evolution in the biosystematics of Hawaiian Drosophilidae. Annu. Rev. Entomol. 28:161-178.
40. KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitiutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
41. LANAVE, C., G. PREPARATA, C. SACCONE, AND G. SERIO. 1984. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20:86-93.
42. LARSON, A. 1994. The comparison of morphological and molecular data in phylogenetic systematics. Pages 371-390 in Molecular ecology and evolution: Approaches and applications (B. Schierwater, B. Streit, G. P. Wagner, and R. DeSalle, eds.). Birkhäuser Verlag, Basel, Switzerland.
43. LIEBHERR, J. K., AND A. E. HAJEK. 1990. A cladistic test of the taxon cycle and taxon pulse hypotheses. Cladistics 6:39-59.
44. LUNT, D. H., D.-X. ZHANG, J. M. SZYMURA, AND G. M. HEWITT. 1996. The insect cytochrome oxidase I gene: Evolutionary patterns and conserved primers for phylogenetic studies. Insect Mol. Biol. 5:153-165.
45. MADDISON, W. P. 1997. Gene trees and species trees. Syst. Biol. 46:523-536.
46. MASON-GAMER, R. J., AND E. A. KELLOGG. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst. Biol. 45:524-545.
47. MCDOUGAL, I. 1979. Age of shield-building volcanism of Kauai and linear migration of volcanism on the Hawaiian Island chain. Earth Planet. Sci. Lett. 46:31-42.
48. NIXON, K. C., AND J. M. CARPENTER. 1996. On simultaneous analysis. Cladistics 12:221-241.
49. PENNINGTON, R. T. 1996. Molecular and morphological data provide phylogenetic resolution at different hierarchical levels in Andira. Syst. Biol. 45:496-515.
50. SIMON, C., F. FRATI, A. BECKENBACH, B. CRESPI, H. LIU, AND P. FLOOK. 1994. Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annu. Entomol. Soc. Am. 87:651-701.
51. STAUFFER, C., F. LAKATOS, AND G. M. HEWITT. 1997. The phylogenetic relationships of seven European Ips (Scoltidae, Ipinae) species. Insect Mol. Biol. 6:233-240.
52. SWOFFORD, D. L. 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b1. Sinauer Associates, Sunderland, Massachusetts.
53. SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogenetic inference. Pages 407-514 in Molecular systematics, 2nd edition (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts.
54. TEMPLETON, A. 1983. Phylogenetic inference from restriction endonculease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-244.
55. VAN DE PEER, Y., I. JANSEN, P. DE RIJK, AND R. DE WACHTER. 1997. Database on the structure of small ribosomal subunit RNA. Nucleic Acids Res. 25:111-116.
56. WENK, P. 1987. Swarming and mating behavior in black flies. Pages 201-214 in Black flies: Ecology, population management, and annotated world list (K. C. Kim and R. W. Merritt, eds.). Pennsylvania State Univ., University Park.
57. WHITE, W. M., AND R. A. DUNCAN. 1996. Geochemistry and geochronology of the Society Islands: New evidence for deep mantle recycling. Geophys. Monogr. 95:183-206.
58. WIENS, J. J. 1998. Combining data sets with different phylogenetic histories. Syst. Biol. 47:568-581.
59. YANG, Z. 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47:125-133.