Hypothetical role of RNA damage avoidance in preventing human disease

Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis

Volumn 577, Issue 1-2 SPEC. ISS., 2005, Pages 293-302

  Brégeon, Damien ^a   Sarasin, Alain ^a  

^a CNRS   (France)

Author keywords

Cancer; Cell death; RNA lesions; RNA repair

Indexed keywords

DNA; RNA; RNA POLYMERASE;

ALKYLATION; ALZHEIMER DISEASE; CANCER; COCKAYNE SYNDROME; CYTOTOXICITY; DNA DAMAGE; GENETIC DAMAGE; HUMAN; OXIDATIVE STRESS; PARKINSON DISEASE; PRIORITY JOURNAL; PROPHYLAXIS; PROTEIN FUNCTION; RADIATION INJURY; REVIEW; RNA DAMAGE; RNA METHYLATION; ULTRAVIOLET RADIATION;

EID: 24044475562     PISSN: 00275107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mrfmmm.2005.04.002     Document Type: Article

References (51)

1. R.I. Glazer, and L.S. Lloyd Association of cell lethality with incorporation of 5-fluorouracil and 5-fluorouridine into nuclear RNA in human colon carcinoma cells in culture Mol. Pharmacol. 21 1982 468 473
2. H. Yu, R. Eritja, L.B. Bloom, and M.F. Goodman Ionization of bromouracil and fluorouracil stimulates base mispairing frequencies with guanine J. Biol. Chem. 268 1993 15935 15943
3. K.A. Heminger, S.D. Hartson, J. Rogers, and R.L. Matts Cisplatin inhibits protein synthesis in rabbit reticulocyte lysate by causing an arrest in elongation Arch. Biochem. Biophys. 344 1997 200 207
4. D. Baltimore Our genome unveiled Nature 409 2001 814 916
5. P.A. Aas, M. Otterlei, P.O. Falnes, C.B. Vagbo, F. Skorpen, M. Akbari, O. Sundheim, M. Bjoras, G. Slupphaug, E. Seeberg, and H.E. Krokan Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA Nature 421 2003 859 863
6. A. Bellacosa, and E.G. Moss RNA repair: damage control Curr. Biol. 13 2003 R482 R484
7. E.C. Friedberg, G.C. Walker, and W. Siede DNA Repair and Mutagenesis 1995 ASM Press Washington, DC
8. B. Sedgwick, and T. Lindahl Recent progress on the Ada response for inducible repair of DNA alkylation damage Oncogene 21 2002 8886 8894
9. H. Kataoka, Y. Yamamoto, and M. Sekiguchi A new gene (alkB) of Escherichia coli that controls sensitivity to methyl methane sulfonate J. Bacteriol. 153 1983 1301 1307
10. B.J. Chen, P. Carroll, and L. Samson The Escherichia coli AlkB protein protects human cells against alkylation-induced toxicity J. Bacteriol. 176 1994 6255 6261
11. L. Aravind, and E.V. Koonin The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases Genome Biol. 2 2001 RESEARCH0007
12. P.O. Falnes, R.F. Johansen, and E. Seeberg AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli Nature 419 2002 178 182
13. S.C. Trewick, T.F. Henshaw, R.P. Hausinger, T. Lindahl, and B. Sedgwick Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage Nature 419 2002 174 178
14. R. Ougland, C.M. Zhang, A. Liiv, R.F. Johansen, E. Seeberg, Y.M. Hou, J. Remme, and P.O. Falnes AlkB restores the biological function of mRNA and tRNA inactivated by chemical methylation Mol. Cell. 16 2004 107 116
15. E. Revenkova, J. Masson, C. Koncz, K. Afsar, L. Jakovleva, and J. Paszkowski Involvement of Arabidopsis thaliana ribosomal protein S27 in mRNA degradation triggered by genotoxic stress EMBO J. 18 1999 490 499
16. B.N. Ames, and L.S. Gold Endogenous mutagens and the causes of aging and cancer Mutat. Res. 250 1991 3 16
17. E.S. Henle, and S. Linn Formation, prevention, and repair of DNA damage by iron/hydrogen peroxide J. Biol. Chem. 272 1997 19095 19098
18. B. Demple, and L. Harrison Repair of oxidative damage to DNA: enzymology and biology Annu. Rev. Biochem. 63 1994 915 948
19. E. Gajewski, G. Rao, Z. Nackerdien, and M. Dizdaroglu Modification of DNA bases in mammalian chromatin by radiation-generated free radicals Biochemistry 29 1990 7876 7882
20. S. Shibutani, M. Takeshita, and A.P. Grollman Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG Nature 349 1991 431 434
21. D. Bregeon, Z.A. Doddridge, H.J. You, B. Weiss, and P.W. Doetsch Transcriptional mutagenesis induced by uracil and 8-oxoguanine in Escherichia coli Mol. Cell. 12 2003 959 970
22. H. Maki, and M. Sekiguchi MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis Nature 355 1992 273 275
23. F. Taddei, H. Hayakawa, M. Bouton, A. Cirinesi, I. Matic, M. Sekiguchi, and M. Radman Counteraction by MutT protein of transcriptional errors caused by oxidative damage Science 278 1997 128 130
24. A. Nunomura, G. Perry, M.A. Pappolla, R. Wade, K. Hirai, S. Chiba, and M.A. Smith RNA oxidation is a prominent feature of vulnerable neurons in Alzheimer's disease J. Neurosci. 19 1999 1959 1964
25. A. Nunomura, S. Chiba, C.F. Lippa, P. Cras, R.N. Kalaria, A. Takeda, K. Honda, M.A. Smith, and G. Perry Neuronal RNA oxidation is a prominent feature of familial Alzheimer's disease Neurobiol. Dis. 17 2004 108 113
26. J. Zhang, G. Perry, M.A. Smith, D. Robertson, S.J. Olson, D.G. Graham, and T.J. Montine Parkinson's disease is associated with oxidative damage to cytoplasmic DNA and RNA in substantia nigra neurons Am. J. Pathol. 154 1999 1423 1429
27. G. Slupphaug, B. Kavli, and H.E. Krokan The interacting pathways for prevention and repair of oxidative DNA damage Mutat. Res. 531 2003 231 251
28. H. Hayakawa, A. Hofer, L. Thelander, S. Kitajima, Y. Cai, S. Oshiro, H. Yakushiji, Y. Nakabeppu, M. Kuwano, and M. Sekiguchi Metabolic fate of oxidized guanine ribonucleotides in mammalian cells Biochemistry 38 1999 3610 3614
29. H. Hayakawa, M. Kuwano, and M. Sekiguchi Specific binding of 8-oxoguanine-containing RNA to polynucleotide phosphorylase protein Biochemistry 40 2001 9977 9982
30. A.J. Carpousis, N.F. Vanzo, and L.C. Raynal mRNA degradation. A tale of poly(A) and multiprotein machines Trends Genet. 15 1999 24 28
31. H. Hayakawa, T. Uchiumi, T. Fukuda, M. Ashizuka, K. Kohno, M. Kuwano, and M. Sekiguchi Binding capacity of human YB-1 protein for RNA containing 8-oxoguanine Biochemistry 41 2002 12739 12744
32. H. Izumi, T. Imamura, G. Nagatani, T. Ise, T. Murakami, H. Uramoto, T. Torigoe, H. Ishiguchi, Y. Yoshida, M. Nomoto, T. Okamoto, T. Uchiumi, M. Kuwano, K. Funa, and K. Kohno Y box-binding protein-1 binds preferentially to single-stranded nucleic acids and exhibits 3′ → 5′ exonuclease activity Nucleic Acids Res. 29 2001 1200 1207
33. M.A. Skabkin, V. Evdokimova, A.A. Thomas, and L.P. Ovchinnikov The major messenger ribonucleoprotein particle protein p50 (YB-1) promotes nucleic acid strand annealing J. Biol. Chem. 276 2001 44841 44847
34. M. Janz, N. Harbeck, P. Dettmar, U. Berger, A. Schmidt, K. Jurchott, M. Schmitt, and H.D. Royer Y-box factor YB-1 predicts drug resistance and patient outcome in breast cancer independent of clinically relevant tumor biologic factors HER2, uPA and PAI-1 Int. J. Cancer 97 2002 278 282
35. T. Ohga, K. Koike, M. Ono, Y. Makino, Y. Itagaki, M. Tanimoto, M. Kuwano, and K. Kohno Role of the human Y box-binding protein YB-1 in cellular sensitivity to the DNA-damaging agents cisplatin, mitomycin C, and ultraviolet light Cancer Res. 56 1996 4224 4228
36. A. Yacoub, L. Augeri, M.R. Kelley, P.W. Doetsch, and W.A. Deutsch A Drosophila ribosomal protein contains 8-oxoguanine and abasic site DNA repair activities EMBO J. 15 1996 2306 2312
37. V. Hegde, M.R. Kelley, Y. Xu, I.S. Mian, and W.A. Deutsch Conversion of the bifunctional 8-oxoguanine/beta-delta apurinic/apyrimidinic DNA repair activities of Drosophila ribosomal protein S3 into the human S3 monofunctional beta-elimination catalyst through a single amino acid change J. Biol. Chem. 276 2001 27591 27596
38. V. Hegde, M. Wang, and W.A. Deutsch Characterization of human ribosomal protein S3 binding to 7,8-dihydro-8-oxoguanine and abasic sites by surface plasmon resonance DNA Repair (Amst.) 3 2004 121 126
39. G.Z. Yusupova, M.M. Yusupov, J.H. Cate, and H.F. Noller The path of messenger RNA through the ribosome Cell 106 2001 233 241
40. S. Takyar, R.P. Hickerson, and H.F. Noller mRNA helicase activity of the ribosome Cell 120 2005 49 58
41. S.T. Kim, and A. Sancar Effect of base, pentose, and phosphodiester backbone structures on binding and repair of pyrimidine dimers by Escherichia coli DNA photolyase Biochemistry 30 1991 8623 8630
42. M.P. Gordon Photorepair of RNA P.C. Hanawalt R.B. Seltow Molecular Mechanisms for Repair of DNA 1975 Plenum Publishing Corp. New York, NY 115 121
43. M.P. Gordon, C. Huang, and J. Hurter Photochemistry and photobiology of ribonucleic acids, ribonucleoproteins and RNA viruses S.Y. Wang Photochemistry and Photobiology of Nucleic Acids 1976 Academic Press New York, NY 265 308
44. J. Hurter, M.P. Gordon, J.P. Kirwan, and A.D. McLaren In vitro photoreactivation of ultraviolet-inactivated ribonucleic acid from tobacco mosaic virus Photochem. Photobiol. 19 1974 185 190
45. L. Towill, C.W. Huang, and M.P. Gordon Photoreactivation of DNA-containing cauliflower mosaic virus and tobacco mosaic virus RNA on Datura Photochem. Photobiol. 25 1977 249 257
46. T. Lindahl Instability and decay of the primary structure of DNA Nature 362 1993 709 715
47. A. Yacoub, M.R. Kelley, and W.A. Deutsch Drosophila ribosomal protein PO contains apurinic/apyrimidinic endonuclease activity Nucleic Acids Res. 24 1996 4298 4303
48. P. Gonzalo, and J.P. Reboud The puzzling lateral flexible stalk of the ribosome Biol. Cell. 95 2003 179 193
49. K.E. Baker, and R. Parker Nonsense-mediated mRNA decay: terminating erroneous gene expression Curr. Opin. Cell Biol. 16 2004 293 299
50. K.M. Brumbaugh, D.M. Otterness, C. Geisen, V. Oliveira, J. Brognard, X. Li, F. Lejeune, R.S. Tibbetts, L.E. Maquat, and R.T. Abraham The mRNA surveillance protein hSMG-1 functions in genotoxic stress response pathways in mammalian cells Mol. Cell 14 2004 585 598
51. F.W. van Leeuwen, D.P. de Kleijn, H.H. van den Hurk, A. Neubauer, M.A. Sonnemans, J.A. Sluijs, S. Koycu, R.D. Ramdjielal, A. Salehi, G.J. Martens, F.G. Grosveld, J. Peter, H. Burbach, and E.M. Hol Frameshift mutants of beta amyloid precursor protein and ubiquitin-B in Alzheimer's and Down patients Science 279 1998 242 247