Transcriptional mutagenesis induced by uracil and 8-oxoguanine in Escherichia coli

Molecular Cell

Volumn 12, Issue 4, 2003, Pages 959-970

  Brégeon, Damien ^a   Doddridge, Zara A ^a,c   You, Ho Jin ^b   Weiss, Bernard ^a   Doetsch, Paul W ^a  

^a EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b Chosun University College of Medicine   (South Korea)

^c UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

8 HYDROXYGUANINE; ADENINE; CYTOSINE; URACIL;

ARTICLE; BACTERIAL STRAIN; DNA DAMAGE; DNA REPAIR; DNA TEMPLATE; ESCHERICHIA COLI; GENE DELETION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; MUTAGENESIS; NONHUMAN; SEQUENCE ANALYSIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 2442590835     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(03)00360-5     Document Type: Article

References (54)

1. Berlyn M.K. Linkage map of Escherichia coli K-12, edition 10. the traditional map Microbiol. Mol. Biol. Rev. 62:1998;814-984.
2. Brégeon D., Matic I., Radman M., Taddei F. Inefficient mismatch repair. genetic defects and down regulation J. Genet. 78:1999;21-28.
3. Bridges B.A. Starvation-associated mutation in Escherichia coli. a spontaneous lesion hypothesis for "directed" mutation Mutat. Res. 307:1994;149-156.
4. Bridges B.A. mutY "directs" mutation? Nature. 375:1995;741.
5. Bridges B.A. Mutation in resting cells. the role of endogenous DNA damage Cancer Surv. 28:1996;155-167.
6. Cabrera M., Nghiem Y., Miller J.H. mutM, a second mutator locus in Escherichia coli that generates G.C to T.A transversions. J. Bacteriol. 170:1988;5405-5407.
7. Doetsch P.W. Translesion synthesis by RNA polymerases. occurrence and biological implications for transcriptional mutagenesis Mutat. Res. 510:2002;131-140.
8. Doetsch P.W., Viswanathan A., Zhou W., Liu J. Bypass of DNA damage by RNA polymerases. implications for DNA repair and transcriptional mutagenesis Dizdaroglu M., Karakaya A. Advances in DNA Damage and Repair. 1999;Plenum Publishers, New York. 97-109.pp.
9. Dohet C., Wagner R., Radman M. Repair of defined single base-pair mismatches in Escherichia coli. Proc. Natl. Acad. Sci. USA. 82:1985;503-505.
10. Duncan B.K., Miller J.H. Mutagenic deamination of cytosine residues in DNA. Nature. 287:1980;560-561.
11. Farabaugh P.J., Bjork G.R. How translational accuracy influences reading frame maintenance. EMBO J. 18:1999;1427-1434.
12. Friedberg E.C., Walker G.C., Siede W. DNA Repair and Mutagenesis. 1995;ASM Press, Washington DC.
13. Gallinari P., Jiricny J. A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase. Nature. 383:1996;735-738.
14. Gates F.T. 3rd, Linn S. Endonuclease V of Escherichia coli. J. Biol. Chem. 252:1977;1647-1653.
15. Goodman M.F. Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu. Rev. Biochem. 71:2002;17-50.
16. Hanawalt P.C. Subpathways of nucleotide excision repair and their regulation. Oncogene. 21:2002;8949-8956.
17. Hazra T.K., Izumi T., Venkataraman R., Kow Y.W., Dizdaroglu M., Mitra S. Characterization of a novel 8-oxoguanine-DNA glycosylase activity in Escherichia coli and identification of the enzyme as endonuclease VIII. J. Biol. Chem. 275:2000;27762-27767.
18. Holmquist G.P. Cell-selfish modes of evolution and mutations directed after transcriptional bypass. Mutat. Res. 510:2002;141-152.
19. Iida T., Furuta A., Nishioka K., Nakabeppu Y., Iwaki T. Expression of 8-oxoguanine DNA glycosylase is reduced and associated with neurofibrillary tangles in Alzheimer's disease brain. Acta Neuropathol. (Berl.). 103:2002;20-25.
20. Ischenko A.A., Saparbaev M.K. Alternative nucleotide incision repair pathway for oxidative DNA damage. Nature. 415:2002;183-187.
21. Kamiya H. Mutagenic potentials of damaged nucleic acids produced by reactive oxygen/nitrogen species. approaches using synthetic oligonucleotides and nucleotides: survey and summary Nucleic Acids Res. 31:2003;517-531.
22. Kunkel T.A., Bebenek K. DNA replication fidelity. Annu. Rev. Biochem. 69:2000;497-529.
23. Kuraoka I., Endou M., Yamaguchi Y., Wada T., Handa H., Tanaka K. Effects of endogenous DNA base lesions on transcription elongation by mammalian RNA polymerase II. Implications for transcription-coupled DNA repair and transcriptional mutagenesis. J. Biol. Chem. 278:2003;7294-7299.
24. Le Page F., Kwoh E.E., Avrutskaya A., Gentil A., Leadon S.A., Sarasin A., Cooper P.K. Transcription-coupled repair of 8-oxoguanine. requirement for XPG, TFIIH, and CSB and implications for Cockayne syndrome Cell. 101:2000;159-171.
25. Libby R.T., Gallant J.A. The role of RNA polymerase in transcriptional fidelity. Mol. Microbiol. 5:1991;999-1004.
26. Liu J., Doetsch P.W. Template strand gap bypass is a general property of prokaryotic RNA polymerases. implications for elongation mechanisms Biochemistry. 35:1996;14999-15008.
27. Liu H., Hewitt S.R., Hays J.B. Antagonism of ultraviolet-light mutagenesis by the methyl-directed mismatch-repair system of Escherichia coli. Genetics. 154:2000;503-512.
28. 4-ethenocytosine from DNA. J. Biol. Chem. 274:1999;31034-31038.
29. Lyras L., Perry R.H., Perry E.K., Ince P.G., Jenner A., Jenner P., Halliwell B. Oxidative damage to proteins, lipids, and DNA in cortical brain regions from patients with dementia with Lewy bodies. J. Neurochem. 71:1998;302-312.
30. Maki H., Sekiguchi M. MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis. Nature. 355:1992;273-275.
31. Matsumoto Y., Zhang Q.M., Takao M., Yasui A., Yonei S. Escherichia coli Nth and human hNTH1 DNA glycosylases are involved in removal of 8-oxoguanine from 8-oxoguanine/guanine mispairs in DNA. Nucleic Acids Res. 29:2001;1975-1981.
32. Mazzarello P., Focher F., Verri A., Spadari S. Misincorporation of uracil into DNA as possible contributor to neuronal aging and abiotrophy. Int. J. Neurosci. 50:1990;169-174.
33. Mellon I., Champe G.N. Products of DNA mismatch repair genes mutS and mutL are required for transcription-coupled nucleotide excision repair of the lactose operon in Escherichia coli. Proc. Natl. Acad. Sci. USA. 93:1996;1292-1297.
34. Mellon I., Rajpal D.K., Koi M., Boland C.R., Champe G.N. Transcription-coupled repair deficiency and mutations in human mismatch repair genes. Science. 272:1996;557-560.
35. Michaels M.L., Pham L., Cruz C., Miller J.H. MutM, a protein that prevents G.C-T.A transversions, is formamidopyrimidine-DNA glycosylase. Nucleic Acids Res. 19:1991;3629-3632.
36. Mokkapati S.K., Fernandez de Hernestrosa A.R., Bhagwat A.S. Escherichia coli DNA glycosylase Mug. a growth-regulated enzyme required for mutation avoidance in stationary phase cells Mol. Microbiol. 41:2001;1101-1111.
37. Nouspikel T., Hanawalt P.C. DNA repair in terminally differentiated cells. DNA Repair (Amst.). 1:2002;59-75.
38. Nunomura A., Perry G., Pappolla M.A., Wade R., Hirai K., Chiba S., Smith M.A. RNA oxidation is a prominent feature of vulnerable neurons in Alzheimer's disease. J. Neurosci. 19:1999;1959-1964.
39. Orgel L.E. The maintenance and accuracy of protein synthesis and its relevance to aging. Proc. Natl. Acad. Sci. USA. 49:1963;517-521.
40. Parker J. Errors and alternatives in reading the universal genetic code. Microbiol. Rev. 53:1989;273-298.
41. Sala-Newby G.B., Campbell A.K. Stepwise removal of the C-terminal 12 amino acids of firefly luciferase results in graded loss of activity. Biochim. Biophys. Acta. 1206:1994;155-160.
42. Savageau M.A. Escherichia coli habitats, cell types, and molecular mechanisms of gene control. Am. Nat. 122:1983;732-744.
43. Selby C.P., Sancar A. Molecular mechanism of transcription-repair coupling. Science. 260:1993;53-58.
44. Shaw R.J., Bonawitz N.D., Reines D. Use of an in vivo reporter assay to test for transcriptional and translational fidelity in yeast. J. Biol. Chem. 277:2002;24420-24426.
45. Shibutani S., Takeshita M., Grollman A.P. Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature. 349:1991;431-434.
46. Taddei F., Hayakawa H., Bouton M., Cirinesi A., Matic I., Sekiguchi M., Radman M. Counteraction by MutT protein of transcriptional errors caused by oxidative damage. Science. 278:1997;128-130.
47. Thomas M.J., Platas A.A., Hawley D.K. Transcriptional fidelity and proofreading by RNA polymerase II. Cell. 93:1998;627-637.
48. Tornaletti S., Hanawalt P.C. Effect of DNA lesions on transcription elongation. Biochimie. 81:1999;139-146.
49. Viswanathan A., Doetsch P.W. Effects of nonbulky DNA base damages on Escherichia coli RNA polymerase-mediated elongation and promoter clearance. J. Biol. Chem. 273:1998;21276-21281.
50. Viswanathan A., You H.J., Doetsch P.W. Phenotypic change caused by transcriptional bypass of uracil in nondividing cells. Science. 284:1999;159-162.
51. Wyrzykowski J., Volkert M.R. The Escherichia coli methyl-directed mismatch repair system repairs base pairs containing oxidative lesions. J. Bacteriol. 185:2003;1701-1704.
52. Yao M., Kow Y.W. Further characterization of Escherichia coli endonuclease V. Mechanism of recognition for deoxyinosine, deoxyuridine, and base mismatches in DNA. J. Biol. Chem. 272:1997;30774-30779.
53. Yonaha M., Proudfoot N.J. Transcriptional termination and coupled polyadenylation in vitro. EMBO J. 19:2000;3770-3777.
54. You H.J., Viswanathan A., Doetsch P.W. In vivo technique for determining transcriptional mutagenesis. Methods. 22:2000;120-126.