Pathway-specific profiling identifies the NF-κB-dependent tumor necrosis factor α-regulated genes in epidermal keratinocytes

Journal of Biological Chemistry

Volumn 280, Issue 19, 2005, Pages 18973-18980

  Banno, Tomohiro ^a,b   Gazel, Alix ^a   Blumenberg, Miroslav ^a  

^a NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BONE; DRUG PRODUCTS; GENETIC ENGINEERING; PROTEINS;

CARCINOGENSIS; CELL CYCLE; MICROARRAYS; TUMOR NECROSIS;

TUMORS;

ANTIINFLAMMATORY AGENT; CYTOKINE; DNA; FLICE INHIBITORY PROTEIN; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; PARTHENOLIDE; SMALL INTERFERING RNA; TUMOR NECROSIS FACTOR ALPHA; CFLAR PROTEIN, HUMAN; COMPLEMENTARY RNA; RNA; SIGNAL PEPTIDE;

ANTIGEN PRESENTATION; APOPTOSIS; ARTICLE; BINDING SITE; CANCER; CARCINOGENESIS; CELL CYCLE; CELL DIFFERENTIATION; CELL METABOLISM; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA MICROARRAY; EPIDERMIS; GENE CONTROL; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE SILENCING; HUMAN; HUMAN CELL; IMMUNE RESPONSE; IMMUNOMODULATION; INFLAMMATION; INFLAMMATORY DISEASE; KERATINOCYTE; PRIORITY JOURNAL; PROMOTER REGION; RNA PROCESSING; SIGNAL TRANSDUCTION; SUPERINFECTION; TUBERCULOSIS; WOUND HEALING; BIOLOGICAL MODEL; CELL NUCLEUS; COMPUTER PROGRAM; FLUORESCENCE MICROSCOPY; GENE EXPRESSION REGULATION; METABOLISM; NICK END LABELING; PROTEIN MOTIF; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TIME;

AMINO ACID MOTIFS; ANTI-INFLAMMATORY AGENTS; APOPTOSIS; BINDING SITES; CASP8 AND FADD-LIKE APOPTOSIS REGULATING PROTEIN; CELL CYCLE; CELL DIFFERENTIATION; CELL NUCLEUS; CYTOKINES; EPIDERMIS; GENE EXPRESSION REGULATION; GENE SILENCING; HUMANS; IN SITU NICK-END LABELING; INFLAMMATION; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; KERATINOCYTES; MICROSCOPY, FLUORESCENCE; MODELS, BIOLOGICAL; NF-KAPPA B; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROMOTER REGIONS (GENETICS); REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA; RNA, COMPLEMENTARY; RNA, SMALL INTERFERING; SIGNAL TRANSDUCTION; SOFTWARE; TIME FACTORS; TUMOR NECROSIS FACTOR-ALPHA;

EID: 21444448471     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M411758200     Document Type: Article

References (44)

1. McDermott, M. F. (2001) Cell. Mol. Biol. (Noisy-le-grand) 47, 619-635
2. Wolf, R., Matz, H., Orion, E., and Ruocco, V. (2002) Clin. Dermatol. 20, 522-530
3. Antoni, C., and Braun, J. (2002) Clin. Exp. Rheumatol. 20, S152-157
4. Nahar, I. K., Shojania, K., Marra, C. A., Alamgir, A. H., and Anis, A. H. (2003) Ann. Pharmacother. 37, 1256-1265
5. Baud, V., and Karin, M. (2001) Trends Cell Biol. 11, 372-377
6. Chen, G., and Goeddel, D. V. (2002) Science 296, 1634-1635
7. Natoli, G., Costanzo, A., Guido, F., Moretti, F., Bernardo, A., Burgio, V. L., Agresti, C., and Levrero, M. (1998) J. Biol. Chem. 273, 31262-31272
8. Seitz, C. S., Lin, Q., Deng, H., and Khavari, P. A. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 2307-2312
9. van Hogerlinden, M., Rozell, B. L., Ahrlund-Richter, L., and Toftgard, R. (1999) Cancer Res. 59, 3299-3303
10. Lind, M. H., Rozell, B., Wallin, R. P., van Hogerlinden, M., Ljunggren, H. G., Toftgard, R., and Sur, I. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 4972-4977
11. Zhang, J. Y., Green, C. L., Tao, S., and Khavari, P. A. (2004) Genes Dev. 18, 17-22
12. Takeda, K., Takeuchi, O., Tsujimura, T., Itami, S., Adachi, O., Kawai, T., Sanjo, H., Yoshikawa, K., Terada, N., and Akira, S. (1999) Science 284, 313-316
13. Hu, Y., Baud, V., Delhase, M., Zhang, P., Deerinck, T., Ellisman, M., Johnson, R., and Karin, M. (1999) Science 284, 316-320
14. Li, Z. W., Chu, W., Hu, Y., Delhase, M., Deerinck, T., Ellisman, M., Johnson, R., and Karin, M. (1999) J. Exp. Med. 189, 1839-1845
15. Smahi, A., Courtois, G., Vabres, P., Yamaoka, S., Heuertz, S., Munnich, A., Israel, A., Heiss, N. S., Klauck, S. M., Kioschis, P., Wiemann, S., Poustka, A., Esposito, T., Bardaro, T., Gianfrancesco, F., Ciccodicola, A., D'Urso, M., Woffendin, H., Jakins, T., Donnai, D., Stewart, H., Kenwrick, S. J., Aradhya, S., Yamagata, T., Levy, M., Lewis, R. A., and Nelson, D. L. (2000) Nature 405, 466-472
16. Klement, J. F., Rice, N. R., Car, B. D., Abbondanzo, S. J., Powers, G. D., Bhatt, P. H., Chen, C. H., Rosen, C. A., and Stewart, C. L. (1996) Mol. Cell. Biol. 16, 2341-2349
17. Pahl, H. L. (1999) Oncogene 18, 6853-6866
18. Adachi, M., Gazel, A., Pintucci, G., Shuck, A., Shifteh, S., Ginsburg, D., Rao, L. S., Kaneko, T., Freedberg, I. M., Tamaki, K., Blumenberg, M., Li, D., Turi, T. G., Schuck, A., and Khitrov, G. (2003) DNA Cell Biol. 22, 665-677
19. Banno, T., Gazel, A., and Blumenberg, M. (2004) J. Biol. Chem. 279, 32633-32642
20. Hehner, S. P., Hofmann, T. G., Droge, W., and Schmitz, M. L. (1999) J. Immunol. 163, 5617-5623
21. Won, Y. K., Ong, C. N., Shi, X., and Shen, H. M. (2004) Carcinogenesis 25, 1449-1458
22. Li, D., Turi, T. G., Schuck, A., Freedberg, I. M., Khitrov, G., and Blumenberg, M. (2001) FASEB J. 15, 2533-2535
23. Banno, T., Adachi, M., Mukkamala, L., and Blumenberg, M. (2003) Antivir. Ther. 8, 541-554
24. Saeed, A. I., Sharov, V., White, J., Li, J., Liang, W., Bhagabati, N., Braisted, J., Klapa, M., Currier, T., Thiagarajan, M., Sturn, A., Snuffin, M., Rezantsev, A., Popov, D., Ryltsov, A., Kostukovich, E., Borisovsky, I., Liu, Z., Vinsavich, A., Trush, V., and Quackenbush, J. (2003) BioTechniques 34, 374-378
25. Livak, K. J., and Schmittgen, T. D. (2001) Methods 25, 402-408
26. Pasparakis, M., Courtois, G., Hafner, M., Schmidt-Supprian, M., Nenci, A., Toksoy, A., Krampert, M., Goebeler, M., Gillitzer, R., Israel, A., Krieg, T., Rajewsky, K., and Haase, I. (2002) Nature 417, 861-866
27. Kassner, A., Hansen, U., Miosge, N., Reinhardt, D. P., Aigner, T., Bruckner-Tuderman, L., Bruckner, P., and Grassel, S. (2003) Matrix Biol. 22, 131-143
28. Legg, J., Jensen, U. B., Broad, S., Leigh, I., and Watt, F. M. (2003) Development 130, 6049-6063
29. Wang, C. Y., Mayo, M. W., Korneluk, R. G., Goeddel, D. V., and Baldwin, A. S., Jr. (1998) Science 281, 1680-1683
30. Karin, M., and Lin, A. (2002) Nat. Immunol. 3, 221-227
31. Kataoka, T., Schroter, M., Hahne, M., Schneider, P., Irmler, M., Thome, M., Froelich, C. J., and Tschopp, J. (1998) J. Immunol. 161, 3936-3942
32. He, K. L., and Ting, A. T. (2002) Mol. Cell. Biol. 22, 6034-6045
33. Ahn, S. G., Kim, H. S., Jeong, S. W., Kim, B. E., Rhim, H., Shim, J. Y., Kim, J. W., Lee, J. H., and Kim, I. K. (2002) Exp. Mol. Med. 34, 243-249
34. Chang, D. W., Xing, Z., Pan, Y., Algeciras-Schimnich, A., Barnhart, B. C., Yaish-Ohad, S., Peter, M. E., and Yang, X. (2002) EMBO J. 21, 3704-3714
35. Beg, A. A., Sha, W. C., Bronson, R. T., Ghosh, S., and Baltimore, D. (1995) Nature 376, 167-170
36. Beg, A. A., and Baltimore, D. (1996) Science 274, 782-784
37. Irmler, M., Thome, M., Hahne, M., Schneider, P., Hofmann, K., Steiner, V., Bodmer, J. L., Schroter, M., Burns, K., Mattmann, C., Rimoldi, D., French, L. E., and Tschopp, J. (1997) Nature 388, 190-195
38. Wang, X. J., Liefer, K. M., Tsai, S., O'Malley, B. W., and Roop, D. R. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 8483-8488
39. Hirsch, D. S., Pirone, D. M., and Burbelo, P. D. (2001) J. Biol. Chem. 276, 875-883
40. Carter, N., Nakamoto, T., Hirai, H., and Hunter, T. (2002) Nat. Cell Biol. 4, 565-573
41. Brown, E. J., and Frazier, W. A. (2001) Trends Cell Biol. 11, 130-135
42. O'Neill, G. M., and Golemis, E. A. (2001) Mol. Cell. Biol. 21, 5094-5108
43. Komine, M., Rao, L. S., Kaneko, T., Tomic-Canic, M., Tamaki, K., Freedberg, I. M., and Blumenberg, M. (2000) J. Biol. Chem. 275, 32077-32088
44. Roulston, A., Reinhard, C., Amiri, P., and Williams, L. T. (1998) J. Biol. Chem. 273, 10232-10239