-
1
-
-
0141815541
-
Analysis of singleton ORFans in fully sequenced microbial genomes
-
N. Siew, and D. Fischer Analysis of singleton ORFans in fully sequenced microbial genomes Proteins 53 2003 241 251
-
(2003)
Proteins
, vol.53
, pp. 241-251
-
-
Siew, N.1
Fischer, D.2
-
2
-
-
0043011009
-
Comparative genomics of Archaea: How much have we learned in six years, and what's next?
-
K.S. Makarova, and E.V. Koonin Comparative genomics of Archaea: how much have we learned in six years, and what's next? Genome Biol. 4 2003 115
-
(2003)
Genome Biol.
, vol.4
, pp. 115
-
-
Makarova, K.S.1
Koonin, E.V.2
-
3
-
-
0141958302
-
Comparative genomics of yeast species: New insights into their biology
-
E. Herrero, M.A. de la Torre, and E. Valentin Comparative genomics of yeast species: new insights into their biology Int. Microbiol. 6 2003 183 190
-
(2003)
Int. Microbiol.
, vol.6
, pp. 183-190
-
-
Herrero, E.1
De La Torre, M.A.2
Valentin, E.3
-
4
-
-
0037007642
-
Something new under the sea
-
Y. Boucher, and W.F. Doolittle Something new under the sea Nature 417 2002 27 28
-
(2002)
Nature
, vol.417
, pp. 27-28
-
-
Boucher, Y.1
Doolittle, W.F.2
-
5
-
-
0037228878
-
Twenty thousand ORFan microbial protein families for the biologist?
-
N. Siew, and D. Fischer Twenty thousand ORFan microbial protein families for the biologist? Structure (Camb) 11 2003 7 9
-
(2003)
Structure (Camb)
, vol.11
, pp. 7-9
-
-
Siew, N.1
Fischer, D.2
-
7
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
M.J. Gardner, N. Hall, E. Fung, O. White, M. Berriman, R.W. Hyman, J.M. Carlton, A. Pain, K.E. Nelson, S. Bowman, I.T. Paulsen, K. James, J.A. Eisen, K. Rutherford, S.L. Salzberg, A. Craig, S. Kyes, M.S. Chan, V. Nene, S.J. Shallom, B. Suh, J. Peterson, S. Angiuoli, M. Pertea, J. Allen, J. Selengut, D. Haft, M.W. Mather, A.B. Vaidya, D.M. Martin, A.H. Fairlamb, M.J. Fraunholz, D.S. Roos, S.A. Ralph, G.I. McFadden, L.M. Cummings, G.M. Subramanian, C. Mungall, J.C. Venter, D.J. Carucci, S.L. Hoffman, C. Newbold, R.W. Davis, C.M. Fraser, and B. Barrell Genome sequence of the human malaria parasite Plasmodium falciparum Nature 419 2002 498 511
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
Carlton, J.M.7
Pain, A.8
Nelson, K.E.9
Bowman, S.10
Paulsen, I.T.11
James, K.12
Eisen, J.A.13
Rutherford, K.14
Salzberg, S.L.15
Craig, A.16
Kyes, S.17
Chan, M.S.18
Nene, V.19
Shallom, S.J.20
Suh, B.21
Peterson, J.22
Angiuoli, S.23
Pertea, M.24
Allen, J.25
Selengut, J.26
Haft, D.27
Mather, M.W.28
Vaidya, A.B.29
Martin, D.M.30
Fairlamb, A.H.31
Fraunholz, M.J.32
Roos, D.S.33
Ralph, S.A.34
McFadden, G.I.35
Cummings, L.M.36
Subramanian, G.M.37
Mungall, C.38
Venter, J.C.39
Carucci, D.J.40
Hoffman, S.L.41
Newbold, C.42
Davis, R.W.43
Fraser, C.M.44
Barrell, B.45
more..
-
8
-
-
4344710320
-
Structural biology sheds light on the puzzle of genomic ORFans
-
N. Siew, and D. Fischer Structural biology sheds light on the puzzle of genomic ORFans J. Mol. Biol. 342 2004 369 373
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 369-373
-
-
Siew, N.1
Fischer, D.2
-
9
-
-
0029894792
-
The yeast genome project: What did we learn?
-
B. Dujon The yeast genome project: what did we learn? Trends Genet. 12 1996 263 270
-
(1996)
Trends Genet.
, vol.12
, pp. 263-270
-
-
Dujon, B.1
-
10
-
-
0033198828
-
Origin and properties of non-coding ORFs in the yeast genome
-
P. Mackiewicz, M. Kowalczuk, A. Gierlik, M.R. Dudek, and S. Cebrat Origin and properties of non-coding ORFs in the yeast genome Nucleic Acids Res. 27 1999 3503 3509
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3503-3509
-
-
MacKiewicz, P.1
Kowalczuk, M.2
Gierlik, A.3
Dudek, M.R.4
Cebrat, S.5
-
11
-
-
0034754788
-
The evolutionary analysis of orphans from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes
-
K.J. Schmid, and C.F. Aquadro The evolutionary analysis of orphans from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes Genetics 159 2001 589 598
-
(2001)
Genetics
, vol.159
, pp. 589-598
-
-
Schmid, K.J.1
Aquadro, C.F.2
-
12
-
-
0035424711
-
On the total number of genes and their length distribution in complete microbial genomes
-
M. Skovgaard, L.J. Jensen, S. Brunak, D. Ussery, and A. Krogh On the total number of genes and their length distribution in complete microbial genomes Trends Genet. 17 2001 425 428
-
(2001)
Trends Genet.
, vol.17
, pp. 425-428
-
-
Skovgaard, M.1
Jensen, L.J.2
Brunak, S.3
Ussery, D.4
Krogh, A.5
-
13
-
-
0034956159
-
A reannotation of the Saccharomyces cerevisiae genome
-
V. Wood, K.M. Rutherford, A. Ivens, M.-A. Rajandream, and B. Barrell A reannotation of the Saccharomyces cerevisiae genome Comp. Funct. Genom. 2 2001 143 154
-
(2001)
Comp. Funct. Genom.
, vol.2
, pp. 143-154
-
-
Wood, V.1
Rutherford, K.M.2
Ivens, A.3
Rajandream, M.-A.4
Barrell, B.5
-
14
-
-
0142222533
-
Birth and death of orphan genes in Rickettsia
-
H. Amiri, W. Davids, and S.G. Andersson Birth and death of orphan genes in Rickettsia Mol. Biol. Evol. 20 2003 1575 1587
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1575-1587
-
-
Amiri, H.1
Davids, W.2
Andersson, S.G.3
-
15
-
-
0033976524
-
Biological function made crystal clear - Annotation of hypothetical proteins via structural genomics
-
E. Eisenstein, G.L. Gilliland, O. Herzberg, J. Moult, J. Orban, R.J. Poljak, L. Banerjei, D. Richardson, and A.J. Howard Biological function made crystal clear - annotation of hypothetical proteins via structural genomics Curr. Opin. Biotechnol. 11 2000 25 30
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 25-30
-
-
Eisenstein, E.1
Gilliland, G.L.2
Herzberg, O.3
Moult, J.4
Orban, J.5
Poljak, R.J.6
Banerjei, L.7
Richardson, D.8
Howard, A.J.9
-
16
-
-
0037305974
-
Overview of structural genomics: From structure to function
-
C. Zhang, and S.H. Kim Overview of structural genomics: from structure to function Curr. Opin. Chem. Biol. 7 2003 28 32
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 28-32
-
-
Zhang, C.1
Kim, S.H.2
-
17
-
-
0034068863
-
Structural genomics of microbes: An objective
-
S.H. Kim Structural genomics of microbes: an objective Curr. Opin. Struct. Biol. 10 2000 380 383
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 380-383
-
-
Kim, S.H.1
-
18
-
-
0033768266
-
Target selection for structural genomics
-
S.E. Brenner Target selection for structural genomics Nat. Struct. Biol. 7 Suppl. 2000 967 969
-
(2000)
Nat. Struct. Biol.
, vol.7
, Issue.SUPPL.
, pp. 967-969
-
-
Brenner, S.E.1
-
19
-
-
0032431024
-
Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics
-
T.I. Zarembinski, L.W. Hung, H.J. Mueller-Dieckmann, K.K. Kim, H. Yokota, R. Kim, and S.H. Kim Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics Proc. Natl. Acad. Sci. USA 95 1998 15189 15193
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15189-15193
-
-
Zarembinski, T.I.1
Hung, L.W.2
Mueller-Dieckmann, H.J.3
Kim, K.K.4
Yokota, H.5
Kim, R.6
Kim, S.H.7
-
20
-
-
0036891686
-
Crystal structure of a major secreted protein of Mycobacterium tuberculosis-MPT63 at 1.5-A resolution
-
C.W. Goulding, A. Parseghian, M.R. Sawaya, D. Cascio, M.I. Apostol, M.L. Gennaro, and D. Eisenberg Crystal structure of a major secreted protein of Mycobacterium tuberculosis-MPT63 at 1.5-A resolution Protein Sci. 11 2002 2887 2893
-
(2002)
Protein Sci.
, vol.11
, pp. 2887-2893
-
-
Goulding, C.W.1
Parseghian, A.2
Sawaya, M.R.3
Cascio, D.4
Apostol, M.I.5
Gennaro, M.L.6
Eisenberg, D.7
-
21
-
-
0037816443
-
Crystal structure of the YchF protein reveals binding sites for GTP and nucleic acid
-
A. Teplyakov, G. Obmolova, S.Y. Chu, J. Toedt, E. Eisenstein, A.J. Howard, and G.L. Gilliland Crystal structure of the YchF protein reveals binding sites for GTP and nucleic acid J. Bacteriol. 185 2003 4031 4037
-
(2003)
J. Bacteriol.
, vol.185
, pp. 4031-4037
-
-
Teplyakov, A.1
Obmolova, G.2
Chu, S.Y.3
Toedt, J.4
Eisenstein, E.5
Howard, A.J.6
Gilliland, G.L.7
-
22
-
-
0026540411
-
The alpha/beta hydrolase fold
-
D.L. Ollis, E. Cheah, M. Cygler, B. Dijkstra, F. Frolow, S.M. Franken, M. Harel, S.J. Remington, I. Silman, and J. Schrag The alpha/beta hydrolase fold Protein Eng. 5 1992 197 211
-
(1992)
Protein Eng.
, vol.5
, pp. 197-211
-
-
Ollis, D.L.1
Cheah, E.2
Cygler, M.3
Dijkstra, B.4
Frolow, F.5
Franken, S.M.6
Harel, M.7
Remington, S.J.8
Silman, I.9
Schrag, J.10
-
24
-
-
0032784276
-
Alpha/beta hydrolase fold enzymes: The family keeps growing
-
M. Nardini, and B.W. Dijkstra Alpha/beta hydrolase fold enzymes: the family keeps growing Curr. Opin. Struct. Biol. 9 1999 732 737
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 732-737
-
-
Nardini, M.1
Dijkstra, B.W.2
-
25
-
-
0034285515
-
Alpha/beta-hydrolase fold enzymes: Structures, functions and mechanisms
-
M. Holmquist Alpha/beta-hydrolase fold enzymes: structures, functions and mechanisms Curr. Protein. Pept. Sci. 1 2000 209 235
-
(2000)
Curr. Protein. Pept. Sci.
, vol.1
, pp. 209-235
-
-
Holmquist, M.1
-
26
-
-
0032926663
-
Crystal structure of brefeldin a esterase, a bacterial homolog of the mammalian hormone-sensitive lipase
-
Y. Wei, J.A. Contreras, P. Sheffield, T. Osterlund, U. Derewenda, R.E. Kneusel, U. Matern, C. Holm, and Z.S. Derewenda Crystal structure of brefeldin A esterase, a bacterial homolog of the mammalian hormone-sensitive lipase Nat. Struct. Biol. 6 1999 340 345
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 340-345
-
-
Wei, Y.1
Contreras, J.A.2
Sheffield, P.3
Osterlund, T.4
Derewenda, U.5
Kneusel, R.E.6
Matern, U.7
Holm, C.8
Derewenda, Z.S.9
-
27
-
-
0033591361
-
The X-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1. An enzyme to detoxify harmful epoxides
-
M. Nardini, I.S. Ridder, H.J. Rozeboom, K.H. Kalk, R. Rink, D.B. Janssen, and B.W. Dijkstra The X-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1. An enzyme to detoxify harmful epoxides J. Biol. Chem. 274 1999 14579 14586
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 14579-14586
-
-
Nardini, M.1
Ridder, I.S.2
Rozeboom, H.J.3
Kalk, K.H.4
Rink, R.5
Janssen, D.B.6
Dijkstra, B.W.7
-
28
-
-
0033024132
-
Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26
-
K. Hynkova, Y. Nagata, M. Takagi, and J. Damborsky Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26 FEBS Lett. 446 1999 177 181
-
(1999)
FEBS Lett.
, vol.446
, pp. 177-181
-
-
Hynkova, K.1
Nagata, Y.2
Takagi, M.3
Damborsky, J.4
-
29
-
-
0344172698
-
Bacterial 2,4-dioxygenases: New members of the alpha/beta hydrolase-fold superfamily of enzymes functionally related to serine hydrolases
-
F. Fischer, S. Kunne, and S. Fetzner Bacterial 2,4-dioxygenases: new members of the alpha/beta hydrolase-fold superfamily of enzymes functionally related to serine hydrolases J. Bacteriol. 181 1999 5725 5733
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5725-5733
-
-
Fischer, F.1
Kunne, S.2
Fetzner, S.3
-
30
-
-
0030806487
-
Repositioning the catalytic triad aspartic acid of haloalkane dehalogenase: Effects on stability, kinetics, and structure
-
G.H. Krooshof, E.M. Kwant, J. Damborsky, J. Koca, and D.B. Janssen Repositioning the catalytic triad aspartic acid of haloalkane dehalogenase: effects on stability, kinetics, and structure Biochemistry 36 1997 9571 9580
-
(1997)
Biochemistry
, vol.36
, pp. 9571-9580
-
-
Krooshof, G.H.1
Kwant, E.M.2
Damborsky, J.3
Koca, J.4
Janssen, D.B.5
-
32
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
F. Kunst, N. Ogasawara, I. Moszer, A.M. Albertini, G. Alloni, V. Azevedo, M.G. Bertero, P. Bessieres, A. Bolotin, S. Borchert, R. Borriss, L. Boursier, A. Brans, M. Braun, S.C. Brignell, S. Bron, S. Brouillet, C.V. Bruschi, B. Caldwell, V. Capuano, N.M. Carter, S.K. Choi, J.J. Codani, I.F. Connerton, and A. Danchin The complete genome sequence of the gram-positive bacterium Bacillus subtilis Nature 390 1997 249 256
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
Bertero, M.G.7
Bessieres, P.8
Bolotin, A.9
Borchert, S.10
Borriss, R.11
Boursier, L.12
Brans, A.13
Braun, M.14
Brignell, S.C.15
Bron, S.16
Brouillet, S.17
Bruschi, C.V.18
Caldwell, B.19
Capuano, V.20
Carter, N.M.21
Choi, S.K.22
Codani, J.J.23
Connerton, I.F.24
Danchin, A.25
more..
-
33
-
-
0034327380
-
Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
-
H. Takami, K. Nakasone, Y. Takaki, G. Maeno, R. Sasaki, N. Masui, F. Fuji, C. Hirama, Y. Nakamura, N. Ogasawara, S. Kuhara, and K. Horikoshi Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis Nucleic Acids Res. 28 2000 4317 4331
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4317-4331
-
-
Takami, H.1
Nakasone, K.2
Takaki, Y.3
Maeno, G.4
Sasaki, R.5
Masui, N.6
Fuji, F.7
Hirama, C.8
Nakamura, Y.9
Ogasawara, N.10
Kuhara, S.11
Horikoshi, K.12
-
34
-
-
0038752612
-
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
-
N. Ivanova, A. Sorokin, I. Anderson, N. Galleron, B. Candelon, V. Kapatral, A. Bhattacharyya, G. Reznik, N. Mikhailova, A. Lapidus, L. Chu, M. Mazur, E. Goltsman, N. Larsen, M. D'Souza, T. Walunas, Y. Grechkin, G. Pusch, R. Haselkorn, M. Fonstein, S.D. Ehrlich, R. Overbeek, and N. Kyrpides Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis Nature 423 2003 87 91
-
(2003)
Nature
, vol.423
, pp. 87-91
-
-
Ivanova, N.1
Sorokin, A.2
Anderson, I.3
Galleron, N.4
Candelon, B.5
Kapatral, V.6
Bhattacharyya, A.7
Reznik, G.8
Mikhailova, N.9
Lapidus, A.10
Chu, L.11
Mazur, M.12
Goltsman, E.13
Larsen, N.14
D'Souza, M.15
Walunas, T.16
Grechkin, Y.17
Pusch, G.18
Haselkorn, R.19
Fonstein, M.20
Ehrlich, S.D.21
Overbeek, R.22
Kyrpides, N.23
more..
-
35
-
-
0038752613
-
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
-
T.D. Read, S.N. Peterson, N. Tourasse, L.W. Baillie, I.T. Paulsen, K.E. Nelson, H. Tettelin, D.E. Fouts, J.A. Eisen, S.R. Gill, E.K. Holtzapple, O.A. Okstad, E. Helgason, J. Rilstone, M. Wu, J.F. Kolonay, M.J. Beanan, R.J. Dodson, L.M. Brinkac, M. Gwinn, R.T. DeBoy, R. Madpu, S.C. Daugherty, A.S. Durkin, D.H. Haft, W.C. Nelson, J.D. Peterson, M. Pop, H.M. Khouri, D. Radune, J.L. Benton, Y. Mahamoud, L. Jiang, I.R. Hance, J.F. Weidman, K.J. Berry, R.D. Plaut, A.M. Wolf, K.L. Watkins, W.C. Nierman, A. Hazen, R. Cline, C. Redmond, J.E. Thwaite, O. White, S.L. Salzberg, B. Thomason, A.M. Friedlander, T.M. Koehler, P.C. Hanna, A.B. Kolsto, and C.M. Fraser The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria Nature 423 2003 81 86
-
(2003)
Nature
, vol.423
, pp. 81-86
-
-
Read, T.D.1
Peterson, S.N.2
Tourasse, N.3
Baillie, L.W.4
Paulsen, I.T.5
Nelson, K.E.6
Tettelin, H.7
Fouts, D.E.8
Eisen, J.A.9
Gill, S.R.10
Holtzapple, E.K.11
Okstad, O.A.12
Helgason, E.13
Rilstone, J.14
Wu, M.15
Kolonay, J.F.16
Beanan, M.J.17
Dodson, R.J.18
Brinkac, L.M.19
Gwinn, M.20
Deboy, R.T.21
Madpu, R.22
Daugherty, S.C.23
Durkin, A.S.24
Haft, D.H.25
Nelson, W.C.26
Peterson, J.D.27
Pop, M.28
Khouri, H.M.29
Radune, D.30
Benton, J.L.31
Mahamoud, Y.32
Jiang, L.33
Hance, I.R.34
Weidman, J.F.35
Berry, K.J.36
Plaut, R.D.37
Wolf, A.M.38
Watkins, K.L.39
Nierman, W.C.40
Hazen, A.41
Cline, R.42
Redmond, C.43
Thwaite, J.E.44
White, O.45
Salzberg, S.L.46
Thomason, B.47
Friedlander, A.M.48
Koehler, T.M.49
Hanna, P.C.50
Kolsto, A.B.51
Fraser, C.M.52
more..
-
36
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
37
-
-
0037252683
-
CDD: A curated Entrez database of conserved domain alignments
-
A. Marchler-Bauer, J.B. Anderson, C. DeWeese-Scott, N.D. Fedorova, L.Y. Geer, S. He, D.I. Hurwitz, J.D. Jackson, A.R. Jacobs, C.J. Lanczycki, C.A. Liebert, C. Liu, T. Madej, G.H. Marchler, R. Mazumder, A.N. Nikolskaya, A.R. Panchenko, B.S. Rao, B.A. Shoemaker, V. Simonyan, J.S. Song, P.A. Thiessen, S. Vasudevan, Y. Wang, R.A. Yamashita, J.J. Yin, and S.H. Bryant CDD: a curated Entrez database of conserved domain alignments Nucleic Acids Res. 31 2003 383 387
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Deweese-Scott, C.3
Fedorova, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
Liebert, C.A.11
Liu, C.12
Madej, T.13
Marchler, G.H.14
Mazumder, R.15
Nikolskaya, A.N.16
Panchenko, A.R.17
Rao, B.S.18
Shoemaker, B.A.19
Simonyan, V.20
Song, J.S.21
Thiessen, P.A.22
Vasudevan, S.23
Wang, Y.24
Yamashita, R.A.25
Yin, J.J.26
Bryant, S.H.27
more..
-
38
-
-
0022381050
-
Nucleotide sequence of the pldB gene and characteristics of deduced amino acid sequence of lysophospholipase L2 in Escherichia coli
-
T. Kobayashi, I. Kudo, K. Karasawa, H. Mizushima, K. Inoue, and S. Nojima Nucleotide sequence of the pldB gene and characteristics of deduced amino acid sequence of lysophospholipase L2 in Escherichia coli J. Biochem. (Tokyo) 98 1985 1017 1025
-
(1985)
J. Biochem. (Tokyo)
, vol.98
, pp. 1017-1025
-
-
Kobayashi, T.1
Kudo, I.2
Karasawa, K.3
Mizushima, H.4
Inoue, K.5
Nojima, S.6
-
40
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
L. Holm, and C. Sander Dali: a network tool for protein structure comparison Trends Biochem. Sci. 20 1995 478 480
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
41
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
K. Ginalski, A. Elofsson, D. Fischer, and L. Rychlewski 3D-Jury: a simple approach to improve protein structure predictions Bioinformatics 19 2003 1015 1018
-
(2003)
Bioinformatics
, vol.19
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
42
-
-
0041620404
-
Detection of reliable and unexpected protein fold predictions using 3D-Jury
-
K. Ginalski, and L. Rychlewski Detection of reliable and unexpected protein fold predictions using 3D-Jury Nucleic Acids Res. 31 2003 3291 3292
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3291-3292
-
-
Ginalski, K.1
Rychlewski, L.2
-
43
-
-
11144241105
-
LiveBench-8: The large-scale, continuous assessment of automated protein structure prediction
-
L. Rychlewski, and D. Fischer LiveBench-8: the large-scale, continuous assessment of automated protein structure prediction Protein Sci. 14 2005 240 245
-
(2005)
Protein Sci.
, vol.14
, pp. 240-245
-
-
Rychlewski, L.1
Fischer, D.2
-
44
-
-
0028483211
-
The metal-ion-free oxidoreductase from Streptomyces aureofaciens has an alpha/beta hydrolase fold
-
H.J. Hecht, H. Sobek, T. Haag, O. Pfeifer, and K.H. van Pee The metal-ion-free oxidoreductase from Streptomyces aureofaciens has an alpha/beta hydrolase fold Nat. Struct. Biol. 1 1994 532 537
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 532-537
-
-
Hecht, H.J.1
Sobek, H.2
Haag, T.3
Pfeifer, O.4
Van Pee, K.H.5
-
45
-
-
0032546740
-
Structural investigation of the cofactor-free chloroperoxidases
-
B. Hofmann, S. Tolzer, I. Pelletier, J. Altenbuchner, K.H. van Pee, and H.J. Hecht Structural investigation of the cofactor-free chloroperoxidases J. Mol. Biol. 279 1998 889 900
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 889-900
-
-
Hofmann, B.1
Tolzer, S.2
Pelletier, I.3
Altenbuchner, J.4
Van Pee, K.H.5
Hecht, H.J.6
-
46
-
-
0242299173
-
3DS3 and 3DS5 3D-SHOTGUN meta-predictors in CAFASP3
-
D. Fischer 3DS3 and 3DS5 3D-SHOTGUN meta-predictors in CAFASP3 Proteins 53 Suppl. 6 2003 517 523
-
(2003)
Proteins
, vol.53
, Issue.6 SUPPL.
, pp. 517-523
-
-
Fischer, D.1
-
47
-
-
10744220076
-
Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling
-
D. Petrey, Z. Xiang, C.L. Tang, L. Xie, M. Gimpelev, T. Mitros, C.S. Soto, S. Goldsmith-Fischman, A. Kernytsky, A. Schlessinger, I.Y. Koh, E. Alexov, and B. Honig Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling Proteins 53 Suppl. 6 2003 430 435
-
(2003)
Proteins
, vol.53
, Issue.6 SUPPL.
, pp. 430-435
-
-
Petrey, D.1
Xiang, Z.2
Tang, C.L.3
Xie, L.4
Gimpelev, M.5
Mitros, T.6
Soto, C.S.7
Goldsmith-Fischman, S.8
Kernytsky, A.9
Schlessinger, A.10
Koh, I.Y.11
Alexov, E.12
Honig, B.13
-
48
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
L.J. McGuffin, K. Bryson, and D.T. Jones The PSIPRED protein structure prediction server Bioinformatics 16 2000 404 405
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
49
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
R. Chenna, H. Sugawara, T. Koike, R. Lopez, T.J. Gibson, D.G. Higgins, and J.D. Thompson Multiple sequence alignment with the Clustal series of programs Nucleic Acids Res. 31 2003 3497 3500
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
50
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
P.J. Kraulis MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24 1991 946 950
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
|