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1
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0242338299
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Submitted
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Tang CL, Xie L, Koh I, Posy S, Alexov E, Honig B. On the role of structure and sequence information for remote homology detection and sequence alignment: new methods using hybrid sequence profiles. Submitted.
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On the Role of Structure and Sequence Information for Remote Homology Detection and Sequence Alignment: New Methods Using Hybrid Sequence Profiles
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Tang, C.L.1
Xie, L.2
Koh, I.3
Posy, S.4
Alexov, E.5
Honig, B.6
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2
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0034682881
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An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance
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Yang AS, Honig B. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. J Mol Bio 2000;301:665-678.
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(2000)
J Mol Bio
, vol.301
, pp. 665-678
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Yang, A.S.1
Honig, B.2
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3
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0035910063
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Combining multiple structure and sequence alignments to improve sequence detection and alignment: Application to the SH2 domains of Janus kinases
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Al-Lazikani B, Sheinerman FB, Honig B. Combining multiple structure and sequence alignments to improve sequence detection and alignment: application to the SH2 domains of Janus kinases. Proc Nat Acad Sci 2001;98:14796-14801.
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(2001)
Proc Nat Acad Sci
, vol.98
, pp. 14796-14801
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Al-Lazikani, B.1
Sheinerman, F.B.2
Honig, B.3
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4
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0028158628
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PHD-an automatic mail server for protein secondary structure prediction
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Rost B, Sander C, Schneider R. PHD-an automatic mail server for protein secondary structure prediction. Comp. Appl. Biosci. 1994;10:53-60.
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(1994)
Comp Appl Biosci
, vol.10
, pp. 53-60
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Rost, B.1
Sander, C.2
Schneider, R.3
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5
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0032420333
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JPred: A consensus secondary structure prediction server
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Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ. JPred: a consensus secondary structure prediction server. Bioinform. 1998; 14:892-3.
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(1998)
Bioinform
, vol.14
, pp. 892-893
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Cuff, J.A.1
Clamp, M.E.2
Siddiqui, A.S.3
Finlay, M.4
Barton, G.J.5
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6
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0034044314
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The PSIPRED protein structure prediction server
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McGuffin LJ, Bryson K, Jones DT. The PSIPRED protein structure prediction server. Bioinform. 2000;16:404-5.
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(2000)
Bioinform
, vol.16
, pp. 404-405
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McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
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7
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0031746105
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Fold prediction by a hierarchy of sequence, threading, and modeling methods
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Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci 1998;7:1431-1440.
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(1998)
Protein Sci
, vol.7
, pp. 1431-1440
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Jaroszewski, L.1
Rychlewski, L.2
Zhang, B.3
Godzik, A.4
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8
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0028961335
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SCOP: A structural classification of proteins database for the investigation of sequences and structures
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Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Bio 1995;247:536-540.
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(1995)
J Mol Bio
, vol.247
, pp. 536-540
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Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
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9
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0037188507
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Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction
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Xiang Z, Soto CS, Honig B. Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction. Proc Nat Acad Sci 2002;99:7432-7437.
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(2002)
Proc Nat Acad Sci
, vol.99
, pp. 7432-7437
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Xiang, Z.1
Soto, C.S.2
Honig, B.3
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10
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0035838974
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Extending the accuracy limits of prediction for side-chain conformations
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Xiang Z, Honig B. Extending the accuracy limits of prediction for side-chain conformations. J Mol Bio 2001;311:421-430.
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(2001)
J Mol Bio
, vol.311
, pp. 421-430
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Xiang, Z.1
Honig, B.2
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11
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0026319199
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Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
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Nicholls A, Sharp KA, Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 1991;11:281-296.
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(1991)
Proteins
, vol.11
, pp. 281-296
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Nicholls, A.1
Sharp, K.A.2
Honig, B.3
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12
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0242274946
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GRASP2: Visualization, surface properties and electrostatics of macromolecular structures and sequences
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In press
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Petrey D, Honig B. GRASP2: visualization, surface properties and electrostatics of macromolecular structures and sequences. Meth Enzymol In press.
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Meth Enzymol
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Petrey, D.1
Honig, B.2
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14
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0026610767
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Assessment of protein models with three-dimensional profiles
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Luthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature 1992;356:83-85.
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(1992)
Nature
, vol.356
, pp. 83-85
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Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
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15
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0034486196
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Free energy determinants of tertiary structure and the evaluation of protein models
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Petrey D, Honig B. Free energy determinants of tertiary structure and the evaluation of protein models. Protein Sci 2000;9:2181-2191.
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(2000)
Protein Sci
, vol.9
, pp. 2181-2191
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Petrey, D.1
Honig, B.2
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